Yehoshua Perl - RankMe

195 papers A* 4A 5B 3Misc 29Journal 110Unranked 44

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	CFC Annotator: A Cluster-Focused Combination Algorithm for Annotating Electronic Health Records by Referencing Interface Terminology. BIOSTEC (2): HEALTHINF Shuxin Zhou, Hao Liu, Pritam Sen, Yehoshua Perl, Mahshad Koohi Habibi Dehkordi
2025	—	`conf`	Enhancing Patient Comprehension of Discharge Notes with a Retrieval-Augmented LLM Approach. BIBM Mahshad Koohi Habibi Dehkordi, Junyu Lu, Yehoshua Perl, Fadi P. Deek
2025	J	`jnl`	Fine-Tuning LLaMA2 for Summarizing Discharge Notes: Evaluating the Role of Highlighted Information. Big Data Cogn. Comput. Mahshad Koohi Habibi Dehkordi, Yehoshua Perl, Fadi P. Deek, Hao Liu
2025	—	`conf`	Optimizing Manual Review Using Machine Learning in Interface Terminology Curation for Automatic EHR Highlighting. BIBM Mahshad Koohi Habibi Dehkordi, Yehoshua Perl, Fadi P. Deek
2024	—	`conf`	Enhancing patient Comprehension: An effective sequential prompting approach to simplifying EHRs using LLMs. BIBM Mahshad Koohi Habibi Dehkordi, Shuxin Zhou, Yehoshua Perl, Fadi P. Deek, Andrew J. Einstein, Gai Elhanan, Zhe He, Hao Liu
2024	—	`conf`	Skimming of Electronic Health Records Highlighted by an Interface Terminology Curated with Machine Learning Mining. BIOSTEC (2) Mahshad Koohi Habibi Dehkordi, Navya Martin Kollapally, Yehoshua Perl, James Geller, Fadi P. Deek, Hao Liu, Vipina Kuttichi Keloth, Gai Elhanan, Andrew J. Einstein
2024	—	`conf`	Using Generative Large Language Models for Hierarchical Relationship Prediction in Medical Ontologies. ICHI Hao Liu, Shuxin Zhou, Zhehuan Chen, Yehoshua Perl, Jiayin Wang
2024	—	`conf`	Using clinical entity recognition for curating an interface terminology to aid fast skimming of EHRs. BIBM Navya Martin Kollapally, Mahshad Koohi Habibi Dehkordi, Yehoshua Perl, James Geller, Fadi P. Deek, Hao Liu, Vipina Kuttichi Keloth, Gai Elhanan, Andrew J. Einstein, Shuxin Zhou
2023	J	`jnl`	Big knowledge visualization of the COVID-19 CIDO ontology evolution. BMC Medical Informatics Decis. Mak. Ling Zheng, Yehoshua Perl, Yongqun He
2023	J	`jnl`	Guidelines for the reuse of ontology content. Appl. Ontology Michael Halper, Larisa N. Soldatova, Mathias Brochhausen, Fatima Sabiu Maikore, Christopher Ochs, Yehoshua Perl
2023	J	`jnl`	Mining of EHR for interface terminology concepts for annotating EHRs of COVID patients. BMC Medical Informatics Decis. Mak. Vipina Kuttichi Keloth, Shuxin Zhou, Luke Lindemann, Ling Zheng, Gai Elhanan, Andrew J. Einstein, James Geller, Yehoshua Perl
2023	—	`conf`	Using annotation for computerized support for fast skimming of cardiology electronic health record notes. BIBM Mahshad Koohi Habibi Dehkordi, Andrew J. Einstein, Shuxin Zhou, Gai Elhanan, Yehoshua Perl, Vipina Kuttichi Keloth, James Geller, Hao Liu
2022	J	`jnl`	A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. J. Biomed. Semant. Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith
2021	J	`jnl`	Visual comprehension and orientation into the COVID-19 CIDO ontology. J. Biomed. Informatics Ling Zheng, Yehoshua Perl, Yongqun He, Christopher Ochs, James Geller, Hao Liu, Vipina Kuttichi Keloth
2020	J	`jnl`	A review of auditing techniques for the Unified Medical Language System. J. Am. Medical Informatics Assoc. Ling Zheng, Zhe He, Duo Helen Wei, Vipina Kuttichi Keloth, Jungwei Fan, Luke Lindemann, Xinxin Zhu, James J. Cimino, Yehoshua Perl
2020	J	`jnl`	Concept placement using BERT trained by transforming and summarizing biomedical ontology structure. J. Biomed. Informatics Hao Liu, Yehoshua Perl, James Geller
2020	—	`conf`	Generating Training Data for Concept-Mining for an 'Interface Terminology' Annotating Cardiology EHRs. BIBM Vipina Kuttichi Keloth, Shuxin Zhou, Andrew J. Einstein, Gai Elhanan, Yan Chen, James Geller, Yehoshua Perl
2020	—	`conf`	Mining Concepts for a COVID Interface Terminology for Annotation of EHRs. IEEE BigData Vipina Kuttichi Keloth, Shuxin Zhou, Luke Lindemann, Gai Elhanan, Andrew J. Einstein, James Geller, Yehoshua Perl
2020	J	`jnl`	Missing lateral relationships in top-level concepts of an ontology. BMC Medical Informatics Decis. Mak. Ling Zheng, Yan Chen, Hua Min, P. Lloyd Hildebrand, Hao Liu, Michael Halper, James Geller, Sherri de Coronado, Yehoshua Perl
2020	J	`jnl`	Outlier concepts auditing methodology for a large family of biomedical ontologies. BMC Medical Informatics Decis. Mak. Ling Zheng, Hua Min, Yan Chen, Vipina Kuttichi Keloth, James Geller, Yehoshua Perl, George Hripcsak
2019	J	`jnl`	Quality assurance of complex ChEBI concepts based on number of relationship types. Appl. Ontology Hasan Yumak, Ling Zheng, Ling Chen, Michael Halper, Yehoshua Perl, Gareth Owen
2019	Misc	`conf`	Training Convolutional Neural Network with Terminology Summarization Data Improves SNOMED CT Enrichment. AMIA Ling Zheng, Hao Liu, Yehoshua Perl, James Geller
2019	Misc	`conf`	Transfer Learning from BERT to Support Insertion of New Concepts into SNOMED CT. AMIA Hao Liu, Yehoshua Perl, James Geller
2018	—	`conf`	A Quality Assurance Methodology for ChEBI Ontology Focusing on Uncommonly Modeled Concepts. ICBO Hao Liu, Ling Chen, Ling Zheng, Yehoshua Perl, James Geller
2018	—	`conf`	Can a Convolutional Neural Network Support Auditing of NCI Thesaurus Neoplasm Concepts? ICBO Hao Liu, Ling Zheng, Yehoshua Perl, James Geller, Gai Elhanan
2018	J	`jnl`	Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies. J. Biomed. Informatics Ling Zheng, Yan Chen, Gai Elhanan, Yehoshua Perl, James Geller, Christopher Ochs
2018	—	`conf`	Enrichment of SNOMED CT Ophthalmology Component to Support EHR Coding. BIBM Hao Liu, P. Lloyd Hildebrand, Yehoshua Perl, James Geller
2018	Misc	`conf`	Overlapping Complex Concepts Have More Commission Errors, Especially in Intensive Terminology Auditing. AMIA Ling Zheng, Hao Liu, Yehoshua Perl, James Geller, Christopher Ochs, James T. Case
2018	—	`conf`	Quality Assurance of Concept Roles in the National Cancer Institute thesaurus. BIBM Ling Zheng, Yan Chen, Yehoshua Perl, Michael Halper, James Geller, Sherri de Coronado
2018	—	`conf`	Quality Assurance of Ontology Content Reuse. ICBO Michael Halper, Christopher Ochs, Yehoshua Perl, Sivaram Arabandi, Mark A. Musen
2018	J	`jnl`	Quality assurance of biomedical terminologies and ontologies. J. Biomed. Informatics James Geller, Yehoshua Perl, Licong Cui, Guo-Qiang Zhang
2018	Misc	`conf`	Using Convolutional Neural Networks to Support Insertion of New Concepts into SNOMED CT. AMIA Hao Liu, James Geller, Michael Halper, Yehoshua Perl
2017	J	`jnl`	An empirical analysis of ontology reuse in BioPortal. J. Biomed. Informatics Christopher Ochs, Yehoshua Perl, James Geller, Sivaram Arabandi, Tania Tudorache, Mark A. Musen
2017	J	`jnl`	Analyzing structural changes in SNOMED CT's Bacterial infectious diseases using a visual semantic delta. J. Biomed. Informatics Christopher Ochs, James T. Case, Yehoshua Perl
2017	Misc	`conf`	Applications of the Ontology Abstraction Framework. AMIA Christopher Ochs, James Geller, Yehoshua Perl
2017	J	`jnl`	Auditing National Cancer Institute thesaurus neoplasm concepts in groups of high error concentration. Appl. Ontology Ling Zheng, Hua Min, Yan Chen, Julia Xu, James Geller, Yehoshua Perl
2017	—	`conf`	Auditing the assignments of top-level semantic types in the UMLS semantic network to UMLS concepts. BIBM Zhe He, Yehoshua Perl, Gai Elhanan, Yan Chen, James Geller, Jiang Bian
2017	—	`conf`	Correcting Ontology Errors Simplifies Visual Complexity. MedInfo Hao Liu, Ling Zheng, Yehoshua Perl, Yan Chen, Gai Elhanan
2017	—	`conf`	Discovering additional complex NCIt gene concepts with high error rate. BIBM Ling Zheng, Hua Min, Yehoshua Perl, James Geller
2017	J	`jnl`	From SNOMED CT to Uberon: Transferability of evaluation methodology between similarly structured ontologies. Artif. Intell. Medicine Gai Elhanan, Christopher Ochs, José L. V. Mejino Jr., Hao Liu, Christopher J. Mungall, Yehoshua Perl
2017	—	`conf`	Multi-layer Big Knowledge Visualization Scheme for Comprehending Neoplasm Ontology Content. ICBK Ling Zheng, Christopher Ochs, James Geller, Hao Liu, Yehoshua Perl, Sherri de Coronado
2017	J	`jnl`	Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology. J. Biomed. Informatics Ling Zheng, Hasan Yumak, Ling Chen, Christopher Ochs, James Geller, Joan Kapusnik-Uner, Yehoshua Perl
2017	—	`conf`	Real Time Summarization and Visualization of Ontology Change in Protégé. VOILA@ISWC Christopher Ochs, James Geller, Mark A. Musen, Yehoshua Perl
2017	—	`conf`	Summarizing an Ontology: A "Big Knowledge" Coverage Approach. MedInfo Ling Zheng, Yehoshua Perl, Gai Elhanan, Christopher Ochs, James Geller, Michael Halper
2016	—	`conf`	A Descriptive Delta for Identifying Changes in SNOMED CT. ICBO/BioCreative Christopher Ochs, Yehoshua Perl, Gai Elhanan, James T. Case
2016	—	`conf`	A Quality-Assurance Study of ChEBI. ICBO/BioCreative Hasan Yumak, Ling Chen, Michael Halper, Ling Zheng, Yehoshua Perl, Gai Elhanan
2016	J	`jnl`	A contextual auditing method for SNOMED CT concepts. Int. J. Data Min. Bioinform. Ankur Agrawal, Yehoshua Perl, Christopher Ochs, Gai Elhanan
2016	J	`jnl`	A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies. J. Biomed. Informatics Christopher Ochs, James Geller, Yehoshua Perl, Mark A. Musen
2016	—	`conf`	How to Summarize Big Knowledge Subjects. ICBO/BioCreative Ling Zheng, Yehoshua Perl, James Geller, Gai Elhanan
2016	J	`jnl`	Quality assurance of the gene ontology using abstraction networks. J. Bioinform. Comput. Biol. Christopher Ochs, Yehoshua Perl, Michael Halper, James Geller, Jane Lomax
2016	Misc	`conf`	Tracking the Remodeling of SNOMED CT's Bacterial Infectious Diseases. AMIA Christopher Ochs, James T. Case, Yehoshua Perl
2016	J	`jnl`	Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. J. Biomed. Informatics Christopher Ochs, Zhe He, Ling Zheng, James Geller, Yehoshua Perl, George Hripcsak, Mark A. Musen
2016	—	`conf`	Visualizing the "Big Picture" of Change in NCIt's Biological Processes. ICBO/BioCreative Yehoshua Perl, Christopher Ochs, Sherri de Coronado, Nicole Thomas
2015	J	`jnl`	A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships. J. Am. Medical Informatics Assoc. Christopher Ochs, James Geller, Yehoshua Perl, Yan Chen, Ankur Agrawal, James T. Case, George Hripcsak
2015	J	`jnl`	Abstraction networks for terminologies: Supporting management of "big knowledge". Artif. Intell. Medicine Michael Halper, Huanying Gu, Yehoshua Perl, Christopher Ochs
2015	—	`conf`	Algorithmic detection of inconsistent modeling among SNOMED CT concepts by combining lexical and structural indicators. BIBM Ankur Agrawal, Yehoshua Perl, Christopher Ochs, Gai Elhanan
2015	Misc	`conf`	Drug-drug Interaction Discovery Using Abstraction Networks for "National Drug File - Reference Terminology" Chemical Ingredients. AMIA Christopher Ochs, Ling Zheng, Huanying Gu, Yehoshua Perl, James Geller, Joan Kapusnik-Uner, Aleksandr Zakharchenko
2015	J	`jnl`	Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies. J. Am. Medical Informatics Assoc. Christopher Ochs, James Geller, Yehoshua Perl, Yan Chen, Junchuan Xu, Hua Min, James T. Case, Zhi Wei
2015	J	`jnl`	Structural measures to track the evolution of SNOMED CT hierarchies. J. Biomed. Informatics Duo Helen Wei, Huanying Helen Gu, Yehoshua Perl, Michael Halper, Christopher Ochs, Gai Elhanan, Yan Chen
2015	J	`jnl`	Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network. J. Biomed. Informatics Christopher Ochs, Yehoshua Perl, James Geller, Melissa A. Haendel, Matthew H. Brush, Sivaram Arabandi, Samson W. Tu
2015	—	`conf`	Using aggregate taxonomies to summarize SNOMED CT evolution. BIBM Christopher Ochs, Yehoshua Perl, James Geller, Mark A. Musen
2013	Misc	`conf`	A Family-Based Framework for Supporting Quality Assurance of Biomedical Ontologies in BioPortal. AMIA Zhe He, Christopher Ochs, Ankur Agrawal, Yehoshua Perl, Dimitris Zeginis, Konstantinos A. Tarabanis, Gai Elhanan, Michael Halper, Natasha F. Noy, James Geller
2013	—	`conf`	Auditing Redundant Import in Reuse of a Top Level Ontology for the Drug Discovery Investigations Ontology. VDOS+DO@ICBO Zhe He, Christopher Ochs, Larisa N. Soldatova, Yehoshua Perl, Sivaram Arabandi, James Geller
2013	—	`conf`	BLUSNO: A System for Orientation, Visualization, and Quality Assurance of SNOMED CT Using Abstraction Networks. ICBO Christopher Ochs, Yehoshua Perl, James Geller
2013	—	`conf`	Choosing the Granularity of Abstraction Networks for Orientation and Quality Assurance of the Sleep Domain Ontology. ICBO Christopher Ochs, Zhe He, Yehoshua Perl, Sivaram Arabandi, Michael Halper, James Geller
2013	Misc	`conf`	Identifying Inconsistencies in SNOMED CT Problem Lists using Structural Indicators. AMIA Ankur Agrawal, Yehoshua Perl, Yan Chen, Gai Elhanan, Mei Liu
2013	—	`conf`	Identifying Problematic Concepts in SNOMED CT using a Lexical Approach. MedInfo Ankur Agrawal, Yehoshua Perl, Gai Elhanan
2013	J	`jnl`	Rule-based support system for multiple UMLS semantic type assignments. J. Biomed. Informatics James Geller, Zhe He, Yehoshua Perl, C. Paul Morrey, Julia Xu
2013	Misc	`conf`	Scalability of Abstraction-Network-Based Quality Assurance to Large SNOMED Hierarchies. AMIA Christopher Ochs, Yehoshua Perl, James Geller, Michael Halper, Huanying Helen Gu, Yan Chen, Gai Elhanan
2013	J	`jnl`	The readiness of SNOMED problem list concepts for meaningful use of electronic health records. Artif. Intell. Medicine Ankur Agrawal, Zhe He, Yehoshua Perl, Duo Helen Wei, Michael Halper, Gai Elhanan, Yan Chen
2012	J	`jnl`	A chemical specialty semantic network for the Unified Medical Language System. J. Cheminformatics C. Paul Morrey, Yehoshua Perl, Michael Halper, Ling Chen, Huanying Gu
2012	J	`jnl`	A study of terminology auditors' performance for UMLS semantic type assignments. J. Biomed. Informatics Huanying Gu, Gai Elhanan, Yehoshua Perl, George Hripcsak, James J. Cimino, Julia Xu, Yan Chen, James Geller, C. Paul Morrey
2012	J	`jnl`	Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED. J. Biomed. Informatics Yue Wang, Michael Halper, Duo Helen Wei, Yehoshua Perl, James Geller
2012	J	`jnl`	Auditing complex concepts of SNOMED using a refined hierarchical abstraction network. J. Biomed. Informatics Yue Wang, Michael Halper, Duo Helen Wei, Huanying Gu, Yehoshua Perl, Junchuan Xu, Gai Elhanan, Yan Chen, Kent A. Spackman, James T. Case, George Hripcsak
2012	—	`conf`	Clinical clarity versus terminological order: the readiness of SNOMED CT concept descriptors for primary care. MIX-HS Zhe He, Michael Halper, Yehoshua Perl, Gai Elhanan
2012	Misc	`conf`	Deriving an Abstraction Network to Support Quality Assurance in OCRe. AMIA Christopher Ochs, Ankur Agrawal, Yehoshua Perl, Michael Halper, Samson W. Tu, Simona Carini, Ida Sim, Natalya Fridman Noy, Mark A. Musen, James Geller
2012	Misc	`conf`	New Abstraction Networks and a New Visualization Tool in Support of Auditing the SNOMED CT Content. AMIA James Geller, Christopher Ochs, Yehoshua Perl, Junchuan Xu
2012	J	`jnl`	Overcoming an obstacle in expanding a UMLS semantic type extent. J. Biomed. Informatics Yan Chen, Huanying Gu, Yehoshua Perl, James Geller
2012	Misc	`conf`	Using Gamification and Crowdsourcing to Enhance Terminology Auditing. AMIA David Daudelin, James Geller, Yehoshua Perl
2011	J	`jnl`	A Relationship-Centric Hybrid Interface for Browsing and Auditing the UMLS. Trans. SDPS Christopher Ochs, James Geller, Yehoshua Perl
2011	J	`jnl`	A survey of SNOMED CT direct users, 2010: impressions and preferences regarding content and quality. J. Am. Medical Informatics Assoc. Gai Elhanan, Yehoshua Perl, James Geller
2011	J	`jnl`	Resolution of redundant semantic type assignments for organic chemicals in the UMLS. Artif. Intell. Medicine C. Paul Morrey, Ling Chen, Michael Halper, Yehoshua Perl
2011	J	`jnl`	Scalability of Piecewise Synonym Identification in Integration of SNOMED into the UMLS. Int. J. Comput. Model. Algorithms Medicine Kuo-Chuan Huang, James Geller, Michael Halper, Gai Elhanan, Yehoshua Perl
2010	J	`jnl`	Source authenticity in the UMLS - A case study of the Minimal Standard Terminology. J. Biomed. Informatics Gai Elhanan, Kuo-Chuan Huang, Yehoshua Perl
2009	Misc	`conf`	Auditing SNOMED Relationships Using a Converse Abstraction Network. AMIA Duo Helen Wei, Michael Halper, Gai Elhanan, Yan Chen, Yehoshua Perl, James Geller, Kent A. Spackman
2009	Misc	`conf`	Comparing Inconsistent Relationship Configurations Indicating UMLS Errors. AMIA James Geller, C. Paul Morrey, Junchuan Xu, Michael Halper, Gai Elhanan, Yehoshua Perl, George Hripcsak
2009	J	`jnl`	Research Paper: Expanding the Extent of a UMLS Semantic Type via Group Neighborhood Auditing. J. Am. Medical Informatics Assoc. Yan Chen, Huanying Gu, Yehoshua Perl, Michael Halper, Junchuan Xu
2009	J	`jnl`	Research Paper: Modeling Multi-typed Structurally Viewed Chemicals with the UMLS Refined Semantic Network. J. Am. Medical Informatics Assoc. Ling Chen, C. Paul Morrey, Huanying Gu, Michael Halper, Yehoshua Perl
2009	J	`jnl`	Special Issue on Auditing of Terminologies. J. Biomed. Informatics James Geller, Yehoshua Perl, Michael Halper, Ronald Cornet
2009	J	`jnl`	Structural group auditing of a UMLS semantic type's extent. J. Biomed. Informatics Yan Chen, Huanying Gu, Yehoshua Perl, James Geller, Michael Halper
2009	J	`jnl`	Structural group-based auditing of missing hierarchical relationships in UMLS. J. Biomed. Informatics Yan Chen, Huanying Helen Gu, Yehoshua Perl, James Geller
2009	J	`jnl`	The Neighborhood Auditing Tool: A hybrid interface for auditing the UMLS. J. Biomed. Informatics C. Paul Morrey, James Geller, Michael Halper, Yehoshua Perl
2009	J	`jnl`	Using WordNet synonym substitution to enhance UMLS source integration. Artif. Intell. Medicine Kuo-Chuan Huang, James Geller, Michael Halper, Yehoshua Perl, Junchuan Xu
2008	Misc	`conf`	Auditing Complex Concepts in Overlapping Subsets of SNOMED. AMIA Yue Wang, Duo Helen Wei, Junchuan Xu, Gai Elhanan, Yehoshua Perl, Michael Halper, Yan Chen, Kent A. Spackman, George Hripcsak
2008	J	`jnl`	Automated comparative auditing of NCIT genomic roles using NCBI. J. Biomed. Informatics Barry Cohen, Marc Oren, Hua Min, Yehoshua Perl, Michael Halper
2008	J	`jnl`	Comparing and consolidating two heuristic metaschemas. J. Biomed. Informatics Yan Chen, Yehoshua Perl, James Geller, George Hripcsak, Li Zhang
2008	Misc	`conf`	Complexity Measures to Track the Evolution of a SNOMED Hierarchy. AMIA Duo Helen Wei, Yue Wang, Yehoshua Perl, Junchuan Xu, Michael Halper, Kent A. Spackman
2007	Misc	`conf`	Analysis of Error Concentrations in SNOMED. AMIA Michael Halper, Yue Wang, Hua Min, Yan Chen, George Hripcsak, Yehoshua Perl, Kent A. Spackman
2007	J	`jnl`	Analysis of a Study of the Users, Uses, and Future Agenda of the UMLS. J. Am. Medical Informatics Assoc. Yan Chen, Yehoshua Perl, James Geller, James J. Cimino
2007	Misc	`conf`	Evaluation of a UMLS Auditing Process of Semantic Type Assignments. AMIA Huanying Gu, George Hripcsak, Yan Chen, C. Paul Morrey, Gai Elhanan, James J. Cimino, James Geller, Yehoshua Perl
2007	J	`jnl`	Ownership as a conceptual modeling construct. Data Knowl. Eng. Michael Halper, Li-min Liu, James Geller, Yehoshua Perl
2007	J	`jnl`	Structural methodologies for auditing SNOMED. J. Biomed. Informatics Yue Wang, Michael Halper, Hua Min, Yehoshua Perl, Yan Chen, Kent A. Spackman
2007	Misc	`conf`	Updating the Genomic Component of the UMLS Semantic Network. AMIA Barry Cohen, Yan Chen, Yehoshua Perl
2006	—	`conf`	An Application Intersection Marketing Ontology. Essays in Memory of Shimon Even Xuan Zhou, James Geller, Yehoshua Perl, Michael Halper
2006	J	`jnl`	Research Paper: Auditing as Part of the Terminology Design Life Cycle. J. Am. Medical Informatics Assoc. Hua Min, Yehoshua Perl, Yan Chen, Michael Halper, James Geller, Yue Wang
2005	J	`jnl`	A lexical metaschema for the UMLS semantic network. Artif. Intell. Medicine Li Zhang, Yehoshua Perl, Michael Halper, James Geller, George Hripcsak
2005	J	`jnl`	An expert study evaluating the UMLS lexical metaschema. Artif. Intell. Medicine Li Zhang, George Hripcsak, Yehoshua Perl, Michael Halper, James Geller
2005	J	`jnl`	Model Formulation: Relationship Structures and Semantic Type Assignments of the UMLS Enriched Semantic Network. J. Am. Medical Informatics Assoc. Li Zhang, Michael Halper, Yehoshua Perl, James Geller, James J. Cimino
2004	J	`jnl`	Auditing concept categorizations in the UMLS. Artif. Intell. Medicine Huanying Gu, Yehoshua Perl, Gai Elhanan, Hua Min, Li Zhang, Yi Peng
2004	J	`jnl`	Contextual Partitioning for Comprehension of OODB Schemas. Knowl. Inf. Syst. Huanying Gu, Yehoshua Perl, Michael Halper, James Geller, Erich J. Neuhold
2004	J	`jnl`	Editorial: Ontology Challenges: A Thumbnail Historical Perspective. Knowl. Inf. Syst. James Geller, Yehoshua Perl, Jintae Lee
2004	J	`jnl`	Model Formulation: An Enriched Unified Medical Language System Semantic Network with a Multiple Subsumption Hierarchy. J. Am. Medical Informatics Assoc. Li Zhang, Yehoshua Perl, Michael Halper, James Geller, James J. Cimino
2003	J	`jnl`	Consistency across the hierarchies of the UMLS Semantic Network and Metathesaurus. J. Biomed. Informatics James J. Cimino, Hua Min, Yehoshua Perl
2003	J	`jnl`	Designing metaschemas for the UMLS enriched semantic network. J. Biomed. Informatics Li Zhang, Yehoshua Perl, Michael Halper, James Geller
2003	J	`jnl`	Enhancing OODB semantics to support browsing in an OODB vocabulary representation. Concurr. Comput. Pract. Exp. Li-min Liu, James Geller, Yehoshua Perl
2003	J	`jnl`	Frameworks for incorporating semantic relationships into object-oriented database systems. Concurr. Comput. Pract. Exp. Michael Halper, Li-min Liu, James Geller, Yehoshua Perl
2003	J	`jnl`	Research on structural issues of the UMLS - past, present, and future. J. Biomed. Informatics Yehoshua Perl, James Geller
2003	J	`jnl`	Semantic refinement and error correction in large terminological knowledge bases. Data Knowl. Eng. James Geller, Huanying Gu, Yehoshua Perl, Michael Halper
2002	Misc	`conf`	Auditing the UMLS for redundant classifications. AMIA Yi Peng, Michael Halper, Yehoshua Perl, James Geller
2002	Misc	`conf`	Enriching the structure of the UMLS semantic network. AMIA Li Zhang, Yehoshua Perl, Michael Halper, James Geller, James J. Cimino
2002	J	`jnl`	Evaluation and application of a semantic network partition. IEEE Trans. Inf. Technol. Biomed. James Geller, Yehoshua Perl, Michael Halper, Zong Chen, Huanying Gu
2002	J	`jnl`	Partitioning the UMLS semantic network. IEEE Trans. Inf. Technol. Biomed. Zong Chen, Yehoshua Perl, Michael Halper, James Geller, Huanying Gu
2002	J	`jnl`	The cohesive metaschema: a higher-level abstraction of the UMLS Semantic Network. J. Biomed. Informatics Yehoshua Perl, Zong Chen, Michael Halper, James Geller, Li Zhang, Yi Peng
2002	J	`jnl`	Using OODB Modeling to Partition a Vocabulary in Structurally and Semantically Uniform Concept Groups. IEEE Trans. Knowl. Data Eng. Li-min Liu, Michael Halper, James Geller, Yehoshua Perl
2002	Misc	`conf`	Using the metaschema to audit UMLS classification errors. AMIA Huanying Helen Gu, Hua Min, Yi Peng, Li Zhang, Yehoshua Perl
2001	Misc	`conf`	A metaschema of the UMLS based on a partition of its semantic network. AMIA Michael Halper, Zong Chen, James Geller, Yehoshua Perl
2001	—	`conf`	The Importance of Ownership for E-Commerce. DS-9 James Geller, Yehoshua Perl, Li-min Liu, C. Rush, Michael Halper
2000	Misc	`conf`	How to Partition a Complex Schema of a Medical Terminology. AMIA Huanying Helen Gu, Yehoshua Perl, Michael Halper, James Geller, Feng-shen Kuo, James J. Cimino
2000	Misc	`conf`	Partitioning the Semantic Network of the UMLS. AMIA Zong Chen, Michael Halper, James Geller, Yehoshua Perl
2000	J	`jnl`	Research Paper: Representing the UMLS as an Object-oriented Database: Modeling Issues and Advantages. J. Am. Medical Informatics Assoc. Huanying Gu, Yehoshua Perl, James Geller, Michael Halper, Li-min Liu, James J. Cimino
1999	J	`jnl`	A methodology for partitioning a vocabulary hierarchy into trees. Artif. Intell. Medicine Huanying Gu, Yehoshua Perl, James Geller, Michael Halper, Mansnimar Singh
1999	J	`jnl`	Controlled Vocabularies in OODBs: Modeling Issues and Implementation. Distributed Parallel Databases Li-min Liu, Michael Halper, James Geller, Yehoshua Perl
1999	J	`jnl`	Model Formulation: Benefits of an Object-oriented Database Representation for Controlled Medical Terminologies. J. Am. Medical Informatics Assoc. Huanying Gu, Michael Halper, James Geller, Yehoshua Perl
1999	Misc	`conf`	Modeling the UMLS using an OODB. AMIA Huanying Gu, Yehoshua Perl, James Geller, Michael Halper, Li-min Liu, James J. Cimino
1998	J	`jnl`	An OODB Part-Whole Model: Semantics, Notation and Implementation. Data Knowl. Eng. Michael Halper, James Geller, Yehoshua Perl
1998	Misc	`conf`	Converting an integrated hospital formulary into an object-oriented database representation. AMIA Huanying Gu, Li-min Liu, Michael Halper, James Geller, Yehoshua Perl
1998	J	`jnl`	The New Class of g-Chain Periodic Sorters. J. Parallel Distributed Comput. Ronald I. Becker, David Nassimi, Yehoshua Perl
1998	J	`jnl`	The OODB Path-Method Generator (PMG) Using Access Weights and Precomputed Access Relevance. VLDB J. Ashish Mehta, James Geller, Yehoshua Perl, Erich J. Neuhold
1997	Misc	`conf`	Partitioning a vocabulary's IS-A hierarchy into trees. AMIA Huanying Gu, Yehoshua Perl, James Geller, Michael Halper, James J. Cimino, Mansnimar Singh
1996	J	`jnl`	Computing Access Relevance for Path-Method Generation in OODBs and IM-OODB. J. Intell. Inf. Syst. Ashid Metha, James Geller, Yehoshua Perl, Peter Fankhauser
1996	B	`conf`	Identifying a Forest Hierarchy in an OODB Specification Hierarchy Satisfying Disciplined Modeling. CoopIS Yehoshua Perl, James Geller, Huanying Gu
1996	A	`conf`	Modeling a Vocabulary in an Object-Oriented Database. CIKM Li-min Liu, Michael Halper, Huanying Gu, James Geller, Yehoshua Perl
1995	J	`jnl`	The Shifting Algorithm Technique for the Partitioning of Trees. Discret. Appl. Math. Ronald I. Becker, Yehoshua Perl
1994	A	`conf`	Integrating a Part Relationship Into an Open OODB System Using Metaclasses. CIKM Michael Halper, James Geller, Yehoshua Perl, Wolfgang Klas
1994	—	`conf`	The Generalized Class of g-Chaln Periodic Sorting Networks. IPPS David Nassimi, Yehoshua Perl, Ronald I. Becker
1994	—	`conf`	The OODB Ownership Relationship. OOIS Oscar Yang, Michael Halper, James Geller, Yehoshua Perl
1993	J	`jnl`	A Shifting Algorithm for Constrained min-max Partition on Trees. Discret. Appl. Math. Eliezer Agasi, Ronald I. Becker, Yehoshua Perl
1993	—	`conf`	Computing Access Relevance to Support Path-Method Generation in Interoperable Multi-OODB. RIDE-IMS Ashish Mehta, James Geller, Yehoshua Perl, Peter Fankhauser
1993	J	`jnl`	Most Uniform Path Partitioning and its Use in Image Processing. Discret. Appl. Math. Mario Lucertini, Yehoshua Perl, Bruno Simeone
1993	J	`jnl`	Structural integration: Concepts and case study. J. Syst. Integr. James Geller, Yehoshua Perl, Philip Cannata, Amit P. Sheth, Erich J. Neuhold
1993	B	`conf`	The New Class of g-Chain Periodic Sorters. SPAA Ronald I. Becker, David Nassimi, Yehoshua Perl
1993	A	`conf`	The OODB Path-Method Generator (PMG) Using Precomputed Access Relevance. CIKM Ashish Mehta, James Geller, Yehoshua Perl, Erich J. Neuhold
1993	A	`conf`	Value Propagation in Object-Oriented Database Part Hierarchies. CIKM Michael Halper, James Geller, Yehoshua Perl
1992	A	`conf`	"Part" Relations for Object-Oriented Databases. ER Michael Halper, James Geller, Yehoshua Perl
1992	—	`conf`	A Graphical Schema Representation for Object-Oriented Databases. IDS Michael Halper, James Geller, Yehoshua Perl, Erich J. Neuhold
1992	J	`jnl`	Arithmetic Interpolation Search for Alphabetic Tables. IEEE Trans. Computers Yehoshua Perl, Loizos Gabriel
1992	J	`jnl`	Structural schema integration with full and partial correspondence using the Dual Model. Inf. Syst. James Geller, Yehoshua Perl, Erich J. Neuhold, Amit P. Sheth
1991	—	`conf`	Structural Schema Integration in Heterogeneous Multi-Database Systems using the Dual Model. RIDE-IMS James Geller, Yehoshua Perl, Erich J. Neuhold
1991	J	`jnl`	Structure and Semantics in OODB Class Specifications. SIGMOD Rec. James Geller, Yehoshua Perl, Erich J. Neuhold
1991	B	`conf`	The Cascading of the LZW Compression Algorithm with Arithmetic Coding. Data Compression Conference Yehoshua Perl, Venkat Maram, Nageshwar Kadakuntla
1990	—	`conf`	A Theoretical Underlying Dual Model for Knowledge-Based Systems. ICSI Erich J. Neuhold, James Geller, Yehoshua Perl, Volker Turau
1990	J	`jnl`	Best location of service centers in a treelike network under budget constraints. Discret. Math. James McHugh, Yehoshua Perl
1989	J	`jnl`	Better understanding of batcher's merging networks. Discret. Appl. Math. Yehoshua Perl
1989	—	`conf`	Cascading LZW Algorithm with Huffman Coding: A Variable to Variable Length Compression Algorithm. Great Lakes Computer Science Conference Yehoshua Perl, Ashish Mehta
1989	—	`conf`	Image enhancement by path partitioning. Recent Issues in Pattern Analysis and Recognition Mario Lucertini, Yehoshua Perl, Bruno Simeone
1989	J	`jnl`	The periodic balanced sorting network. J. ACM Martin Dowd, Yehoshua Perl, Larry Rudolph, Michael E. Saks
1987	J	`jnl`	Digraphs with maximum number of paths and cycles. Networks Yehoshua Perl
1985	J	`jnl`	A Linear Recognition Algorithm for Cographs. SIAM J. Comput. Derek G. Corneil, Yehoshua Perl, Lorna K. Stewart
1985	A*	`conf`	Efficient Variants of Huffman Codes in High Level Languages. SIGIR Yaacov Choueka, Shmuel T. Klein, Yehoshua Perl
1985	J	`jnl`	Efficient implementation of a shifting algorithm. Discret. Appl. Math. Yehoshua Perl, Uzi Vishkin
1985	J	`jnl`	Finding the two-core of a tree. Discret. Appl. Math. Ronald I. Becker, Yehoshua Perl
1984	J	`jnl`	Clustering and domination in perfect graphs. Discret. Appl. Math. Derek G. Corneil, Yehoshua Perl
1984	J	`jnl`	Heuristics for finding a maximum number of disjoint bounded paths. Networks D. Ronen, Yehoshua Perl
1984	J	`jnl`	Optimum Split Trees. J. Algorithms Yehoshua Perl
1983	J	`jnl`	Circuit partitioning with size and connection constraints. Networks Yehoshua Perl, Marc Snir
1983	J	`jnl`	Is Text Compression by Prefixes and Suffixes Practical? Acta Informatica Aviezri S. Fraenkel, Moshe Mor, Yehoshua Perl
1983	J	`jnl`	Shifting Algorithms for Tree Partitioning with General Weighting Functions. J. Algorithms Ronald I. Becker, Yehoshua Perl
1983	A*	`conf`	The Balanced Sorting Network. PODC Martin Dowd, Yehoshua Perl, Michael E. Saks
1982	J	`jnl`	A Shifting Algorithm for Min-Max Tree Partitioning. J. ACM Ronald I. Becker, Stephen R. Schach, Yehoshua Perl
1982	A*	`conf`	Is Text Compression by Prefizes and Suffixes Practical? SIGIR Aviezri S. Fraenkel, Moshe Mor, Yehoshua Perl
1982	J	`jnl`	On the Complexity of Edge Labelings for Trees. Theor. Comput. Sci. Yehoshua Perl, Shmuel Zaks
1982	J	`jnl`	The complexity of finding maximum disjoint paths with length constraints. Networks Alon Itai, Yehoshua Perl, Yossi Shiloach
1981	J	`jnl`	Deficient generalized Fibonacci maximum path graphs. Discret. Math. Yehoshua Perl, Shmuel Zaks
1981	—	`conf`	Efficient Optimization of Monotonic Functions on Trees. CAAP Yehoshua Perl, Yossi Shiloach
1981	J	`jnl`	Max-Min Tree Partitioning. J. ACM Yehoshua Perl, Stephen R. Schach
1981	J	`jnl`	Mean flow scheduling and optimal construction of a treelike communication network. Networks Yehoshua Perl, Yaacov Yesha
1981	J	`jnl`	The Complexity of Identifying Redundant and Essential Elements. J. Algorithms Shlomo Moran, Yehoshua Perl
1980	A*	`conf`	A Shifting Algorithm for Min-Max Tree Partitioning. ICALP Ronald I. Becker, Yehoshua Perl, Stephen R. Schach
1979	J	`jnl`	Generalized fibonacci maximum path graphs. Discret. Math. Martin Charles Golumbic, Yehoshua Perl
1978	J	`jnl`	Finding Two Disjoint Paths Between Two Pairs of Vertices in a Graph. J. ACM Yehoshua Perl, Yossi Shiloach
1978	J	`jnl`	Interpolation Search - A Log Log N Search. Commun. ACM Yehoshua Perl, Alon Itai, Haim Avni
1978	—	`conf`	Shortest Paths in a Network with Two Cost Functions. Jerusalem Conference on Information Technology Yehoshua Perl
1977	J	`jnl`	Understanding the Complexity of Interpolation Search. Inf. Process. Lett. Yehoshua Perl, Edward M. Reingold
1976	J	`jnl`	Optimal sequential arrangement of evaluation trees for boolean functions. Inf. Sci. Yehoshua Perl, Yuri Breitbart
1975	J	`jnl`	Efficient Generation of Optimal Prefix Code: Equiprobable Words Using Unequal Cost Letters. J. ACM Yehoshua Perl, M. R. Garey, Shimon Even