Ye Wu

69 papers A* 1Journal 34Unranked 34
YearRankTypeTitle / Venue / Authors
2026 J jnl
DDTracking: A diffusion model-based deep generative framework with local-global spatiotemporal modeling for diffusion MRI tractography.
Medical Image Anal.
Yijie Li, Wei Zhang, Xi Zhu, Ye Wu, Yogesh Rathi, Lauren J. O'Donnell, Fan Zhang
2026 J jnl
TractoRC: A Unified Probabilistic Learning Framework for Joint Tractography Registration and Clustering.
CoRR
Yijie Li, Xi Zhu, Junyi Wang, Ye Wu, Lauren J. O'Donnell, Fan Zhang
2025 — conf
A Novel Deep Learning Approach for Tissue Microstructure Estimation Using Spherical Mean Technique.
ISBI
Yiang Pan, Yuanjing Feng, Jianzhong He, Jianan Cui, Lei Xie, Zan Chen, Qingrun Zeng, Jiawei Zhang, Yan Yu, Konstantin K. Kukanov, Ye Wu
2025 — conf
A Novel Streamline-Based Diffusion MRI Tractography Registration Method with Probabilistic Keypoint Detection.
MICCAI (12)
Junyi Wang, Mubai Du, Ye Wu, Yijie Li, William M. Wells III, Lauren J. O'Donnell, Fan Zhang
2025 J jnl
A Novel Streamline-based diffusion MRI Tractography Registration Method with Probabilistic Keypoint Detection.
CoRR
Junyi Wang, Mubai Du, Ye Wu, Yijie Li, William M. Wells III, Lauren J. O'Donnell, Fan Zhang
2025 J jnl
A survey on deep learning for polyp segmentation: techniques, challenges and future trends.
Vis. Intell.
Jiaxin Mei, Tao Zhou, Kaiwen Huang, Yizhe Zhang, Yi Zhou, Ye Wu, Huazhu Fu
2025 J jnl
DDEvENet: Evidence-based ensemble learning for uncertainty-aware brain parcellation using diffusion MRI.
Comput. Medical Imaging Graph.
Chenjun Li, Dian Yang, Shun Yao, Shuyue Wang, Ye Wu, Le Zhang, Qiannuo Li, Kang Ik Kevin Cho, Johanna Seitz-Holland, Lipeng Ning, Jon Haitz Legarreta, Yogesh Rathi, Carl-Fredrik Westin, Lauren J. O'Donnell, Nir A. Sochen, Ofer Pasternak, Fan Zhang
2025 J jnl
DDTracking: A Deep Generative Framework for Diffusion MRI Tractography with Streamline Local-Global Spatiotemporal Modeling.
CoRR
Yijie Li, Wei Zhang, Xi Zhu, Ye Wu, Yogesh Rathi, Lauren J. O'Donnell, Fan Zhang
2025 J jnl
Domain-Interactive Contrastive Learning and Prototype-Guided Self-Training for Cross-Domain Polyp Segmentation.
IEEE Trans. Medical Imaging
Ziru Lu, Yizhe Zhang, Yi Zhou, Ye Wu, Tao Zhou
2025 J jnl
Edge-aware Feature Aggregation Network for Polyp Segmentation.
Mach. Intell. Res.
Tao Zhou, Yizhe Zhang, Geng Chen, Yi Zhou, Ye Wu, Deng-Ping Fan
2025 — conf
Revitalizing Quantitative Imaging with a High-Quality Microstructural Codebook on Diffusion MRI.
BIBM
Tenglong Wang, Jiahao Yu, Xiaoming Liu, Shuxin Cao, Yuanjing Feng, Ye Wu
2025 J jnl
Spherical Harmonics-Based Deep Learning Achieves Generalized and Accurate Diffusion Tensor Imaging.
IEEE J. Biomed. Health Informatics
Yunwei Chen, Jialong Li, Qiqi Lu, Ye Wu, Xiaoming Liu, Yuanyuan Gao, Yanqiu Feng, Zhicheng Zhang, Xinyuan Zhang
2025 — conf
Unsupervised Normative Learning for Quality Assessment on Diffusion MRI.
ISBI
Jiahao Yu, Tenglong Wang, Yifei He, Yiang Pan, Jianzhong He, Ye Wu
2025 J jnl
WeakPolyp-SAM: Segment Anything Model-driven weakly-supervised polyp segmentation.
Knowl. Based Syst.
Yiming Zhao, Tao Zhou, Yunqi Gu, Yi Zhou, Yizhe Zhang, Ye Wu, Huazhu Fu
2024 — conf
Combining Segment Anything Model with Domain-Specific Knowledge for Semi-Supervised Learning in Medical Image Segmentation.
PRCV (14)
Yizhe Zhang, Tao Zhou, Ye Wu, Pengfei Gu, Shuo Wang
2024 J jnl
Cross-contrast mutual fusion network for joint MRI reconstruction and super-resolution.
Pattern Recognit.
Yue Ding, Tao Zhou, Lei Xiang, Ye Wu
2024 J jnl
EVENet: Evidence-based Ensemble Learning for Uncertainty-aware Brain Parcellation Using Diffusion MRI.
CoRR
Chenjun Li, Dian Yang, Shun Yao, Shuyue Wang, Ye Wu, Le Zhang, Qiannuo Li, Kang Ik Kevin Cho, Johanna Seitz-Holland, Lipeng Ning, Jon Haitz Legarreta, Yogesh Rathi, Carl-Fredrik Westin, Lauren J. O'Donnell, Nir A. Sochen, Ofer Pasternak, Fan Zhang
2024 — conf
Introducing QuantConn: Overcoming Challenging Diffusion Acquisitions with Harmonization.
CDMRI@MICCAI
Nancy Newlin, Kurt Schilling, Serge Koudoro, Bramsh Qamar Chandio, Praitayini Kanakaraj, Daniel Moyer, Claire E. Kelly, Sila Genc, Joseph Yuan-Mou Yang, Ye Wu, Nagesh Adluru, Vishwesh Nath, Sudhir K. Pathak, Walter Schneider, Anurag Gade, William Consagra, Yogesh Rathi, Tom Hendriks, Anna Vilanova, Maxime Chamberland, Tomasz Pieciak, Dominika Ciupek, Antonio Tristán-Vega, Santiago Aja-Fernández, Maciej Malawski, Gani Ouedraogo, Julia Machnio, Paul M. Thompson, Neda Jahanshad, Eleftherios Garyfallidis, Bennett A. Landman
2024 — conf
Jointly Estimation of Microstructure Maps Across Acquisition Protocols.
BIBM
Tenglong Wang, Jiahao Yu, Yiang Pan, Jianzhong He, Yifei He, Ye Wu
2024 J jnl
Optimal shrinkage denoising breaks the noise floor in high-resolution diffusion MRI.
Patterns
Khoi Minh Huynh, Wei-Tang Chang, Ye Wu, Pew-Thian Yap
2024 — conf
SMNET: A Spherical Mean Network for Probing Tissue Microarchitecture from Single-Shell DMRI.
ISBI
Ye Wu, Yue Ding, Xiaoming Liu, Jiaolong Qin, Yizhe Zhang, Yoonmi Hong, Tao Zhou
2024 J jnl
Spherical-deconvolution informed filtering of tractograms changes laterality of structural connectome.
NeuroImage
Yifei He, Yoonmi Hong, Ye Wu
2024 J jnl
TestFit: A plug-and-play one-pass test time method for medical image segmentation.
Medical Image Anal.
Yizhe Zhang, Tao Zhou, Yuhui Tao, Shuo Wang, Ye Wu, Benyuan Liu, Pengfei Gu, Qiang Chen, Danny Z. Chen
2024 — conf
TextPolyp: Point-Supervised Polyp Segmentation with Text Cues.
MICCAI (11)
Yiming Zhao, Yi Zhou, Yizhe Zhang, Ye Wu, Tao Zhou
2024 — conf
Transduction Enhanced Inductive Inference for Imbalanced Classification in Medical Images.
ISBI
Yizhe Zhang, Tao Zhou, Ye Wu, Shuo Wang, Danny Z. Chen
2023 J jnl
A Survey on Deep Learning for Polyp Segmentation: Techniques, Challenges and Future Trends.
CoRR
Jiaxin Mei, Tao Zhou, Kaiwen Huang, Yizhe Zhang, Yi Zhou, Ye Wu, Huazhu Fu
2023 J jnl
Brain Tissue Segmentation Across the Human Lifespan via Supervised Contrastive Learning.
CoRR
Xiaoyang Chen, Jinjian Wu, Wenjiao Lyu, Yicheng Zou, Kim-Han Thung, Siyuan Liu, Ye Wu, Sahar Ahmad, Pew-Thian Yap
2023 J jnl
Can SAM Segment Polyps?
CoRR
Tao Zhou, Yizhe Zhang, Yi Zhou, Ye Wu, Chen Gong
2023 — conf
Cross-contrast Fusion and Aggregation Network for Multi-contrast MRI Super-resolution.
ICCAI
Yue Ding, Tao Zhou, Ye Wu
2023 J jnl
Edge-aware Feature Aggregation Network for Polyp Segmentation.
CoRR
Tao Zhou, Yizhe Zhang, Geng Chen, Yi Zhou, Ye Wu, Deng-Ping Fan
2023 A* conf
Hawkeye: A PyTorch-based Library for Fine-Grained Image Recognition with Deep Learning.
ACM Multimedia
Jiabei He, Yang Shen, Xiu-Shen Wei, Ye Wu
2023 J jnl
Hawkeye: A PyTorch-based Library for Fine-Grained Image Recognition with Deep Learning.
CoRR
Jiabei He, Yang Shen, Xiu-Shen Wei, Ye Wu
2023 — conf
Microstructure Fingerprinting for Heterogeneously Oriented Tissue Microenvironments.
MICCAI (8)
Khoi Minh Huynh, Ye Wu, Sahar Ahmad, Pew-Thian Yap
2023 — conf
Relaxation-Diffusion Spectrum Imaging for Probing Tissue Microarchitecture.
MICCAI (8)
Ye Wu, Xiaoming Liu, Xinyuan Zhang, Khoi Minh Huynh, Sahar Ahmad, Pew-Thian Yap
2023 J jnl
SamDSK: Combining Segment Anything Model with Domain-Specific Knowledge for Semi-Supervised Learning in Medical Image Segmentation.
CoRR
Yizhe Zhang, Tao Zhou, Shuo Wang, Ye Wu, Pengfei Gu, Danny Z. Chen
2023 J jnl
Segment Anything Model-guided Collaborative Learning Network for Scribble-supervised Polyp Segmentation.
CoRR
Yiming Zhao, Tao Zhou, Yunqi Gu, Yi Zhou, Yizhe Zhang, Ye Wu, Huazhu Fu
2023 J jnl
Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge.
NeuroImage
Gabriel Girard, Jonathan Rafael-Patino, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak, Matteo Frigo, Sara Sedlar, Samuel Deslauriers-Gauthier, Ivana Kojcic, Mauro Zucchelli, Hiba Laghrissi, Yang Ji, Rachid Deriche, Kurt G. Schilling, Bennett A. Landman, Alberto Cacciola, Gianpaolo Antonio Basile, Salvatore Bertino, Nancy Newlin, Praitayini Kanakaraj, Francois Rheault, Patryk Filipiak, Timothy M. Shepherd, Ying-Chia Lin, Dimitris G. Placantonakis, Fernando E. Boada, Steven H. Baete, Erick Hernandez-Gutierrez, Alonso Ramirez-Manzanares, Ricardo Coronado-Leija, Pablo Stack-Sánchez, Luis Concha, Maxime Descoteaux, Sina Mansour L., Caio Seguin, Andrew Zalesky, Kenji Marshall, Erick Jorge Canales-Rodríguez, Ye Wu, Sahar Ahmad, Pew-Thian Yap, Antoine Théberge, Florence Gagnon, Frédéric Massi, Elda Fischi Gomez, Remy Gardier, Juan Luis Villarreal-Haro, Marco Pizzolato, Emmanuel Caruyer, Jean-Philippe Thiran
2022 — conf
Harmonization of Multi-site Cortical Data Across the Human Lifespan.
MLMI@MICCAI
Sahar Ahmad, Fang Nan, Ye Wu, Zhengwang Wu, Weili Lin, Li Wang, Gang Li, Di Wu, Pew-Thian Yap
2022 J jnl
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI.
NeuroImage
Chiara Maffei, Gabriel Girard, Kurt G. Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, Achille Teillac, Steven H. Baete, Davood Karimi, Fang-Cheng Yeh, Mert E. Yildiz, Ali Gholipour, Yann Bihan-Poudec, Bassem Hiba, Andrea Quattrone, Aldo Quattrone, Tommy Boshkovski, Nikola Stikov, Pew-Thian Yap, Alberto De Luca, Josien P. W. Pluim, Alexander Leemans, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Bennett A. Landman, Erick Jorge Canales-Rodríguez, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Gaëtan Rensonnet, Simona Schiavi, Alessandro Daducci, Marco Pizzolato, Elda Fischi Gomez, Jean-Philippe Thiran, George Dai, Giorgia Grisot, Nikola Lazovski, Santi Puch, Marc Ramos, Paulo Rodrigues, Vesna Prckovska, Robert Jones, Julia Lehman, Suzanne N. Haber, Anastasia Yendiki
2022 J jnl
Rapid Diffusion Magnetic Resonance Imaging Using Slice-Interleaved Encoding.
Medical Image Anal.
Tiantian Xu, Ye Wu, Yoonmi Hong, Sahar Ahmad, Khoi Minh Huynh, Zhixing Wang, Weili Lin, Wei-Tang Chang, Pew-Thian Yap
2021 — conf
Active Cortex Tractography.
MICCAI (7)
Ye Wu, Yoonmi Hong, Sahar Ahmad, Pew-Thian Yap
2021 — conf
Deep Simulation of Facial Appearance Changes Following Craniomaxillofacial Bony Movements in Orthognathic Surgical Planning.
MICCAI (4)
Lei Ma, Daeseung Kim, Chunfeng Lian, Deqiang Xiao, Tianshu Kuang, Qin Liu, Yankun Lang, Hannah H. Deng, Jaime Gateno, Ye Wu, Erkun Yang, Michael A. K. Liebschner, James J. Xia, Pew-Thian Yap
2021 — conf
Highly Reproducible Whole Brain Parcellation in Individuals via Voxel Annotation with Fiber Clusters.
MICCAI (7)
Ye Wu, Sahar Ahmad, Pew-Thian Yap
2021 — conf
Surface-Guided Image Fusion for Preserving Cortical Details in Human Brain Templates.
MICCAI (7)
Sahar Ahmad, Ye Wu, Pew-Thian Yap
2021 — conf
Vox2Surf: Implicit Surface Reconstruction from Volumetric Data.
MLMI@MICCAI
Yoonmi Hong, Sahar Ahmad, Ye Wu, Siyuan Liu, Pew-Thian Yap
2020 — conf
Characterizing Intra-soma Diffusion with Spherical Mean Spectrum Imaging.
MICCAI (7)
Khoi Minh Huynh, Ye Wu, Kim-Han Thung, Sahar Ahmad, Hoyt Patrick Taylor IV, Dinggang Shen, Pew-Thian Yap
2020 — conf
Fast Correction of Eddy-Current and Susceptibility-Induced Distortions Using Rotation-Invariant Contrasts.
MICCAI (2)
Sahar Ahmad, Ye Wu, Khoi Minh Huynh, Kim-Han Thung, Weili Lin, Dinggang Shen, Pew-Thian Yap
2020 — conf
Globally Optimized Super-Resolution of Diffusion MRI Data via Fiber Continuity.
MICCAI (7)
Ye Wu, Yoonmi Hong, Sahar Ahmad, Wei-Tang Chang, Weili Lin, Dinggang Shen, Pew-Thian Yap
2020 J jnl
Mitigating gyral bias in cortical tractography via asymmetric fiber orientation distributions.
Medical Image Anal.
Ye Wu, Yoonmi Hong, Yuanjing Feng, Dinggang Shen, Pew-Thian Yap
2020 J jnl
Multifold Acceleration of Diffusion MRI via Slice-Interleaved Diffusion Encoding (SIDE).
CoRR
Yoonmi Hong, Wei-Tang Chang, Geng Chen, Ye Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap
2020 J jnl
Probing Tissue Microarchitecture of the Baby Brain via Spherical Mean Spectrum Imaging.
IEEE Trans. Medical Imaging
Khoi Minh Huynh, Tiantian Xu, Ye Wu, Xifeng Wang, Geng Chen, Haiyong Wu, Kim-Han Thung, Weili Lin, Dinggang Shen, Pew-Thian Yap
2020 — conf
Tract Dictionary Learning for Fast and Robust Recognition of Fiber Bundles.
MICCAI (7)
Ye Wu, Yoonmi Hong, Sahar Ahmad, Weili Lin, Dinggang Shen, Pew-Thian Yap
2019 — conf
Asymmetry Spectrum Imaging for Baby Diffusion Tractography.
IPMI
Ye Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap
2019 — conf
Automated Parcellation of the Cortex Using Structural Connectome Harmonics.
MICCAI (3)
Hoyt Patrick Taylor IV, Zhengwang Wu, Ye Wu, Dinggang Shen, Han Zhang, Pew-Thian Yap
2019 — conf
Characterizing Non-Gaussian Diffusion in Heterogeneously Oriented Tissue Microenvironments.
MICCAI (3)
Khoi Minh Huynh, Tiantian Xu, Ye Wu, Kim-Han Thung, Geng Chen, Weili Lin, Dinggang Shen, Pew-Thian Yap
2019 — conf
DeepBundle: Fiber Bundle Parcellation with Graph Convolution Neural Networks.
GLMI@MICCAI
Feihong Liu, Jun Feng, Geng Chen, Ye Wu, Yoonmi Hong, Pew-Thian Yap, Dinggang Shen
2019 J jnl
DeepBundle: Fiber Bundle Parcellation with Graph Convolution Neural Networks.
CoRR
Feihong Liu, Jun Feng, Geng Chen, Ye Wu, Yoonmi Hong, Pew-Thian Yap, Dinggang Shen
2019 — conf
Dynamic Routing Capsule Networks for Mild Cognitive Impairment Diagnosis.
MICCAI (4)
Zhicheng Jiao, Pu Huang, Tae-Eui Kam, Li-Ming Hsu, Ye Wu, Han Zhang, Dinggang Shen
2019 — conf
Early Development of Infant Brain Complex Network.
MICCAI (2)
Weixiong Jiang, Han Zhang, Li-Ming Hsu, Dan Hu, Guoshi Li, Ye Wu, Dinggang Shen
2019 — conf
Identification of Abnormal Circuit Dynamics in Major Depressive Disorder via Multiscale Neural Modeling of Resting-State fMRI.
MICCAI (3)
Guoshi Li, Yujie Liu, Yanting Zheng, Ye Wu, Pew-Thian Yap, Shijun Qiu, Han Zhang, Dinggang Shen
2019 J jnl
Mitigating Gyral Bias in Cortical Tractography via Asymmetric Fiber Orientation Distributions.
CoRR
Ye Wu, Yoonmi Hong, Yuanjing Feng, Dinggang Shen, Pew-Thian Yap
2019 J jnl
Multi-Site Harmonization of Diffusion MRI Data via Method of Moments.
IEEE Trans. Medical Imaging
Khoi Minh Huynh, Geng Chen, Ye Wu, Dinggang Shen, Pew-Thian Yap
2019 — conf
Probing Brain Micro-architecture by Orientation Distribution Invariant Identification of Diffusion Compartments.
MICCAI (3)
Khoi Minh Huynh, Tiantian Xu, Ye Wu, Geng Chen, Kim-Han Thung, Haiyong Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap
2018 — conf
A Multi-Tissue Global Estimation Framework for Asymmetric Fiber Orientation Distributions.
MICCAI (3)
Ye Wu, Yuanjing Feng, Dinggang Shen, Pew-Thian Yap
2018 J jnl
An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.
NeuroImage
Fan Zhang, Ye Wu, Isaiah Norton, Laura Rigolo, Yogesh Rathi, Nikos Makris, Lauren J. O'Donnell
2018 J jnl
Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder.
NeuroImage
Ye Wu, Fan Zhang, Nikos Makris, Yuping Ning, Isaiah Norton, Shenglin She, Hongjun Peng, Yogesh Rathi, Yuanjing Feng, Huawang Wu, Lauren J. O'Donnell
2018 — conf
Penalized Geodesic Tractography for Mitigating Gyral Bias.
MICCAI (3)
Ye Wu, Yuanjing Feng, Dinggang Shen, Pew-Thian Yap
2015 — conf
Global consistency spatial model for fiber orientation distribution estimation.
ISBI
Ye Wu, Yuanjing Feng, Fei Li, Carl-Fredrik Westin
2015 J jnl
Sparse deconvolution of higher order tensor for fiber orientation distribution estimation.
Artif. Intell. Medicine
Yuanjing Feng, Ye Wu, Yogesh Rathi, Carl-Fredrik Westin