Yatish Turakhia

28 papers A* 5A 2Journal 17Unranked 4
YearRankTypeTitle / Venue / Authors
2026 A* conf
DP-HLS: A High-Level Synthesis Framework for Accelerating Dynamic Programming Algorithms in Bioinformatics.
HPCA
Anshu Gupta, Yingqi Cao, Jason Liang, Yatish Turakhia
2026 J jnl
WEPP: Phylogenetic placement achieves near-haplotype resolution in wastewater-based epidemiology.
PLoS Comput. Biol.
Pranav Gangwar, Pratik Katte, Manu Bhat, Yatish Turakhia
2025 J jnl
Toward a Generalized Accelerator for Genome Sequence Analysis.
Commun. ACM
Yatish Turakhia
2025 J jnl
Ultrafast and ultralarge multiple sequence alignments using TWILIGHT.
Bioinform.
Yu-Hsiang Tseng, Sumit Walia, Yatish Turakhia
2024 J jnl
DP-HLS: A High-Level Synthesis Framework for Accelerating Dynamic Programming Algorithms in Bioinformatics.
CoRR
Yingqi Cao, Anshu Gupta, Jason Liang, Yatish Turakhia
2024 A* conf
TALCO: Tiling Genome Sequence Alignment Using Convergence of Traceback Pointers.
HPCA
Sumit Walia, Cheng Ye, Arkid Bera, Dhruvi Lodhavia, Yatish Turakhia
2024 — conf
The Genomic Computing Revolution: Defining the Next Decades of Accelerating Genomics.
HPEC
Harisankar Sadasivan, Artur Klauser, Jürgen Hench, Yatish Turakhia, Gagandeep Singh, Alberto Zeni, Sarah J. Beecroft, Satish Narayanasamy, Jeff Nivala, Bob Robey, Onur Mutlu, Kristof Denolf, Sriranjani Sitaraman
2023 J jnl
DecentTree: scalable Neighbour-Joining for the genomic era.
Bioinform.
Weiwen Wang, James Barbetti, Thomas Wong, Bryan Thornlow, Russell Corbett-Detig, Yatish Turakhia, Robert Lanfear, Bui Quang Minh
2023 J jnl
Tracking and curating putative SARS-CoV-2 recombinants with RIVET.
Bioinform.
Kyle Smith, Cheng Ye, Yatish Turakhia
2022 J jnl
BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees.
J. Open Source Softw.
Jakob McBroome, Yatish Turakhia, Russell Corbett-Detig
2022 — conf
HiCOMB 2022 Invited Speaker: Pandemic-scale Phylogenetics.
IPDPS Workshops
Yatish Turakhia
2022 J jnl
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2.
Bioinform.
Cheng Ye, Bryan Thornlow, Angie S. Hinrichs, Alexander Kramer, Cade Mirchandani, Devika Torvi, Robert Lanfear, Russell Corbett-Detig, Yatish Turakhia
2022 J jnl
phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets.
PLoS Comput. Biol.
Nicola De Maio, William R. Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett-Detig, Nick Goldman
2021 J jnl
ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees.
J. Open Source Softw.
Alexander Kramer, Yatish Turakhia, Russell Corbett-Detig
2020 J jnl
Domain-specific hardware accelerators.
Commun. ACM
William J. Dally, Yatish Turakhia, Song Han
2020 A conf
SegAlign: a scalable GPU-based whole genome aligner.
SC
Sneha D. Goenka, Yatish Turakhia, Benedict Paten, Mark Horowitz
2019 A* conf
Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High Speedup.
HPCA
Yatish Turakhia, Sneha D. Goenka, Gill Bejerano, William J. Dally
2019 — conf
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly.
USENIX ATC
Yatish Turakhia, Gill Bejerano, William J. Dally
2019 J jnl
Darwin: A Genomics Coprocessor.
IEEE Micro
Yatish Turakhia, Gill Bejerano, William J. Dally
2019 — conf
Parallel Approach to Sliding Window Sums.
ICA3PP (2)
Roman Snytsar, Yatish Turakhia
2018 A* conf
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly.
ASPLOS
Yatish Turakhia, Gill Bejerano, William J. Dally
2018 J jnl
Parallel approach to sliding window sums.
CoRR
Roman Snytsar, Yatish Turakhia
2017 J jnl
HoLiSwap: Reducing Wire Energy in L1 Caches.
CoRR
Yatish Turakhia, Subhasis Das, Tor M. Aamodt, William J. Dally
2017 J jnl
Thread Progress Equalization: Dynamically Adaptive Power-Constrained Performance Optimization of Multi-Threaded Applications.
IEEE Trans. Computers
Yatish Turakhia, Guangshuo Liu, Siddharth Garg, Diana Marculescu
2016 J jnl
Thread Progress Equalization: Dynamically Adaptive Power and Performance Optimization of Multi-threaded Applications.
CoRR
Yatish Turakhia, Guangshuo Liu, Siddharth Garg, Diana Marculescu
2015 J jnl
Framework for Application Mapping over Packet-Switched Network of FPGAs: Case Studies.
CoRR
Vinay B. Y. Kumar, Pinalkumar Engineer, Mandar Datar, Yatish Turakhia, Saurabh Agarwal, Sanket Diwale, Sachin B. Patkar
2013 A conf
Cherry-picking: exploiting process variations in dark-silicon homogeneous chip multi-processors.
DATE
Bharathwaj Raghunathan, Yatish Turakhia, Siddharth Garg, Diana Marculescu
2013 A* conf
HaDeS: architectural synthesis for <u>h</u>eterogeneous <u>d</u>ark <u>s</u>ilicon chip multi-processors.
DAC
Yatish Turakhia, Bharathwaj Raghunathan, Siddharth Garg, Diana Marculescu