Yasuo Tabei

88 papers A* 8A 2B 10C 8Journal 54Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
Dynamic r-index: An Updatable Self-Index for Highly Repetitive Strings.
CoRR
Takaaki Nishimoto, Yasuo Tabei
2025 J jnl
jXBW: Fast Substructure Search in Large-Scale JSONL Datasets for Foundation Model Applications.
CoRR
Yasuo Tabei
2024 C conf
A Branch-and-Bound Approach to Efficient Classification and Retrieval of Documents.
ICPRAM
Kotaro Ii, Hiroto Saigo, Yasuo Tabei
2024 J jnl
Dynamic Suffix Array in Optimal Compressed Space.
CoRR
Takaaki Nishimoto, Yasuo Tabei
2023 J jnl
Multi-agent statistical discriminative sub-trajectory mining and an application to NBA basketball.
CoRR
Rory P. Bunker, Vo Nguyen Le Duy, Yasuo Tabei, Ichiro Takeuchi, Keisuke Fujii
2022 A* conf
An Optimal-Time RLBWT Construction in BWT-Runs Bounded Space.
ICALP
Takaaki Nishimoto, Shunsuke Kanda, Yasuo Tabei
2022 J jnl
An Optimal-Time RLBWT Construction in BWT-runs Bounded Space.
CoRR
Takaaki Nishimoto, Shunsuke Kanda, Yasuo Tabei
2022 J jnl
LZRR: LZ77 parsing with right reference.
Inf. Comput.
Takaaki Nishimoto, Yasuo Tabei
2022 J jnl
Stat-DSM: Statistically Discriminative Sub-Trajectory Mining With Multiple Testing Correction.
IEEE Trans. Knowl. Data Eng.
Vo Nguyen Le Duy, Takuto Sakuma, Taiju Ishiyama, Hiroki Toda, Kazuya Arai, Masayuki Karasuyama, Yuta Okubo, Masayuki Sunaga, Hiroyuki Hanada, Yasuo Tabei, Ichiro Takeuchi
2021 J jnl
Block trees.
J. Comput. Syst. Sci.
Djamal Belazzougui, Manuel Cáceres, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Gonzalo Navarro, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei
2021 J jnl
DyFT: a dynamic similarity search method on integer sketches.
Knowl. Inf. Syst.
Shunsuke Kanda, Yasuo Tabei
2021 — conf
Fréchet Kernel for Trajectory Data Analysis.
SIGSPATIAL/GIS
Koh Takeuchi, Masaaki Imaizumi, Shunsuke Kanda, Yasuo Tabei, Keisuke Fujii, Ken Yoda, Masakazu Ishihata, Takuya Maekawa
2021 A* conf
Optimal-Time Queries on BWT-Runs Compressed Indexes.
ICALP
Takaaki Nishimoto, Yasuo Tabei
2021 B conf
R-enum: Enumeration of Characteristic Substrings in BWT-runs Bounded Space.
CPM
Takaaki Nishimoto, Yasuo Tabei
2021 J jnl
Sparse Nonnegative Interaction Models.
IEEE Access
Mirai Takayanagi, Yasuo Tabei, Einoshin Suzuki, Hiroto Saigo
2020 J jnl
A compressed dynamic self-index for highly repetitive text collections.
Inf. Comput.
Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei
2020 B conf
Automatically mining Relevant Variable Interactions Via Sparse Bayesian Learning.
ICPR
Ryoichiro Yafune, Daisuke Sakuma, Mirai Takayanagi, Yasuo Tabei, Noritaka Saito, Hiroto Saigo
2020 J jnl
Dynamic Path-decomposed Tries.
ACM J. Exp. Algorithmics
Shunsuke Kanda, Dominik Köppl, Yasuo Tabei, Kazuhiro Morita, Masao Fuketa
2020 A* conf
Dynamic Similarity Search on Integer Sketches.
ICDM
Shunsuke Kanda, Yasuo Tabei
2020 J jnl
Dynamic Similarity Search on Integer Sketches.
CoRR
Shunsuke Kanda, Yasuo Tabei
2020 J jnl
Enumeration of LCP values, LCP intervals and Maximal repeats in BWT-runs Bounded Space.
CoRR
Takaaki Nishimoto, Yasuo Tabei
2020 J jnl
Faster Queries on BWT-runs Compressed Indexes.
CoRR
Takaaki Nishimoto, Yasuo Tabei
2020 J jnl
PARASOL: a hybrid approximation approach for scalable frequent itemset mining in streaming data.
J. Intell. Inf. Syst.
Yoshitaka Yamamoto, Yasuo Tabei, Koji Iwanuma
2020 J jnl
Space-Efficient Feature Maps for String Alignment Kernels.
Data Sci. Eng.
Yasuo Tabei, Yoshihiro Yamanishi, Rasmus Pagh
2020 — conf
Succinct Trit-array Trie for Scalable Trajectory Similarity Search.
SIGSPATIAL/GIS
Shunsuke Kanda, Koh Takeuchi, Keisuke Fujii, Yasuo Tabei
2020 J jnl
Succinct Trit-array Trie for Scalable Trajectory Similarity Search.
CoRR
Shunsuke Kanda, Koh Takeuchi, Keisuke Fujii, Yasuo Tabei
2019 J jnl
Approximate-Closed-Itemset Mining for Streaming Data Under Resource Constraint.
CoRR
Yoshitaka Yamamoto, Yasuo Tabei, Koji Iwanuma
2019 B conf
Conversion from RLBWT to LZ77.
CPM
Takaaki Nishimoto, Yasuo Tabei
2019 J jnl
Conversion from RLBWT to LZ77.
CoRR
Takaaki Nishimoto, Yasuo Tabei
2019 J jnl
Dynamic Path-Decomposed Tries.
CoRR
Shunsuke Kanda, Dominik Köppl, Yasuo Tabei, Kazuhiro Morita, Masao Fuketa
2019 B conf
LZRR: LZ77 Parsing with Right Reference.
DCC
Takaaki Nishimoto, Yasuo Tabei
2019 J jnl
Network-based characterization of drug-protein interaction signatures with a space-efficient approach.
BMC Syst. Biol.
Yasuo Tabei, Masaaki Kotera, Ryusuke Sawada, Yoshihiro Yamanishi
2019 J jnl
Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm.
Bioinform.
Michio Iwata, Longhao Yuan, Qibin Zhao, Yasuo Tabei, Francois Berenger, Ryusuke Sawada, Sayaka Akiyoshi, Momoko Hamano, Yoshihiro Yamanishi
2019 A* conf
Space-Efficient Feature Maps for String Alignment Kernels.
ICDM
Yasuo Tabei, Yoshihiro Yamanishi, Rasmus Pagh
2019 — conf
Statistically Discriminative Sub-trajectory Mining with Multiple Testing Correction.
SIGSPATIAL/GIS
Vo Nguyen Le Duy, Takuto Sakuma, Taiju Ishiyama, Hiroki Toda, Kazuya Arai, Masayuki Karasuyama, Yuta Okubo, Masayuki Sunaga, Yasuo Tabei, Ichiro Takeuchi
2019 J jnl
Statistically Discriminative Sub-trajectory Mining.
CoRR
Vo Nguyen Le Duy, Takuto Sakuma, Taiju Ishiyama, Hiroki Toda, Kazuya Nishi, Masayuki Karasuyama, Yuta Okubo, Masayuki Sunaga, Yasuo Tabei, Ichiro Takeuchi
2019 — conf
b-Bit Sketch Trie: Scalable Similarity Search on Integer Sketches.
IEEE BigData
Shunsuke Kanda, Yasuo Tabei
2019 J jnl
b-Bit Sketch Trie: Scalable Similarity Search on Integer Sketches.
CoRR
Shunsuke Kanda, Yasuo Tabei
2018 B conf
A Dynamic Compressed Self-Index for Highly Repetitive Text Collections.
DCC
Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei
2018 A* conf
Entire Regularization Path for Sparse Nonnegative Interaction Model.
ICDM
Mirai Takayanagi, Yasuo Tabei, Hiroto Saigo
2018 J jnl
LZRR: LZ77 Parsing with Right Reference.
CoRR
Takaaki Nishimoto, Yasuo Tabei
2018 J jnl
Scalable Alignment Kernels via Space-Efficient Feature Maps.
CoRR
Yasuo Tabei, Yoshihiro Yamanishi, Rasmus Pagh
2018 C conf
Scalable Machine Learning on Compact Data Representations.
ISITA
Yasuo Tabei
2017 J jnl
A compressed dynamic self-index for highly repetitive text collections.
CoRR
Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei
2017 A* conf
Bayesian Dynamic Mode Decomposition.
IJCAI
Naoya Takeishi, Yoshinobu Kawahara, Yasuo Tabei, Takehisa Yairi
2017 B conf
Scalable Similarity Search for Molecular Descriptors.
SISAP
Yasuo Tabei, Simon J. Puglisi
2016 A* conf
Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices.
KDD
Yasuo Tabei, Hiroto Saigo, Yoshihiro Yamanishi, Simon J. Puglisi
2016 J jnl
Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices.
CoRR
Yasuo Tabei, Hiroto Saigo, Yoshihiro Yamanishi, Simon J. Puglisi
2016 J jnl
Scalable Similarity Search for Molecular Descriptors.
CoRR
Yasuo Tabei, Simon J. Puglisi
2016 J jnl
Simultaneous prediction of enzyme orthologs from chemical transformation patterns for
Bioinform.
Yasuo Tabei, Yoshihiro Yamanishi, Masaaki Kotera
2016 J jnl
siEDM: An Efficient String Index and Search Algorithm for Edit Distance with Moves.
Algorithms
Yoshimasa Takabatake, Kenta Nakashima, Tetsuji Kuboyama, Yasuo Tabei, Hiroshi Sakamoto
2016 J jnl
siEDM: an efficient string index and search algorithm for edit distance with moves.
CoRR
Yoshimasa Takabatake, Kenta Nakashima, Tetsuji Kuboyama, Yasuo Tabei, Hiroshi Sakamoto
2015 A conf
Access, Rank, and Select in Grammar-compressed Strings.
ESA
Djamal Belazzougui, Patrick Hagge Cording, Simon J. Puglisi, Yasuo Tabei
2015 J jnl
Metabolome-scale
Bioinform.
Yoshihiro Yamanishi, Yasuo Tabei, Masaaki Kotera
2015 C conf
Online Self-Indexed Grammar Compression.
SPIRE
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
2015 J jnl
Online Self-Indexed Grammar Compression.
CoRR
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
2015 B conf
Queries on LZ-Bounded Encodings.
DCC
Djamal Belazzougui, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei
2014 — conf
Finding Ambiguous Patterns on Grammar Compressed String.
JSAI-isAI Workshops
Koji Maeda, Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
2014 B conf
Fully Online Grammar Compression in Constant Space.
DCC
Shirou Maruyama, Yasuo Tabei
2014 J jnl
Fully Online Grammar Compression in Constant Space.
CoRR
Shirou Maruyama, Yasuo Tabei
2014 B conf
Improved ESP-index: A Practical Self-index for Highly Repetitive Texts.
SEA
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
2014 J jnl
Improved ESP-index: a practical self-index for highly repetitive texts.
CoRR
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
2014 J jnl
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.
Bioinform.
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Ai Muto, Yuki Moriya, Toshiaki Tokimatsu, Susumu Goto
2014 C conf
Online Pattern Matching for String Edit Distance with Moves.
SPIRE
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
2014 J jnl
Online Pattern Matching for String Edit Distance with Moves.
CoRR
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
2014 J jnl
Queries on LZ-Bounded Encodings.
CoRR
Djamal Belazzougui, Travis Gagie, Pawel Gawrychowski, Juha Kärkkäinen, Alberto Ordóñez Pereira, Simon J. Puglisi, Yasuo Tabei
2014 J jnl
Rank, select and access in grammar-compressed strings.
CoRR
Djamal Belazzougui, Simon J. Puglisi, Yasuo Tabei
2013 J jnl
A Succinct Grammar Compression
CoRR
Yasuo Tabei, Yoshimasa Takabatake, Hiroshi Sakamoto
2013 B conf
A Succinct Grammar Compression.
CPM
Yasuo Tabei, Yoshimasa Takabatake, Hiroshi Sakamoto
2013 C conf
Fully-Online Grammar Compression.
SPIRE
Shirou Maruyama, Yasuo Tabei, Hiroshi Sakamoto, Kunihiko Sadakane
2013 J jnl
Inferring protein domains associated with drug side effects based on drug-target interaction network.
BMC Syst. Biol.
Hiroaki Iwata, Sayaka Mizutani, Yasuo Tabei, Masaaki Kotera, Susumu Goto, Yoshihiro Yamanishi
2013 J jnl
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics.
BMC Syst. Biol.
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto
2013 J jnl
Scalable prediction of compound-protein interactions using minwise hashing.
BMC Syst. Biol.
Yasuo Tabei, Yoshihiro Yamanishi
2013 A* conf
Succinct interval-splitting tree for scalable similarity search of compound-protein pairs with property constraints.
KDD
Yasuo Tabei, Akihiro Kishimoto, Masaaki Kotera, Yoshihiro Yamanishi
2013 J jnl
Supervised
Bioinform.
Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Toshiaki Tokimatsu, Susumu Goto
2012 J jnl
Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers.
Bioinform.
Yasuo Tabei, Edouard Pauwels, Véronique Stoven, Kazuhiro Takemoto, Yoshihiro Yamanishi
2012 J jnl
PoSSuM: a database of similar protein-ligand binding and putative pockets.
Nucleic Acids Res.
Jun-Ichi Ito, Yasuo Tabei, Kana Shimizu, Koji Tsuda, Kentaro Tomii
2012 C conf
Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches.
WABI
Yasuo Tabei
2012 C conf
Variable-Length Codes for Space-Efficient Grammar-Based Compression.
SPIRE
Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
2011 A conf
Kernel-based Similarity Search in Massive Graph Databases with Wavelet Trees.
SDM
Yasuo Tabei, Koji Tsuda
2011 J jnl
LGM: Mining Frequent Subgraphs from Linear Graphs
CoRR
Yasuo Tabei, Daisuke Okanohara, Shuichi Hirose, Koji Tsuda
2011 — conf
LGM: Mining Frequent Subgraphs from Linear Graphs.
PAKDD (2)
Yasuo Tabei, Daisuke Okanohara, Shuichi Hirose, Koji Tsuda
2010 C conf
Single versus Multiple Sorting in All Pairs Similarity Search.
ACML
Yasuo Tabei, Takeaki Uno, Masashi Sugiyama, Koji Tsuda
2009 J jnl
A local multiple alignment method for detection of non-coding RNA sequences.
Bioinform.
Yasuo Tabei, Kiyoshi Asai
2008 J jnl
A fast structural multiple alignment method for long RNA sequences.
BMC Bioinform.
Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
2008 J jnl
Software.ncrna.org: web servers for analyses of RNA sequences.
Nucleic Acids Res.
Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama
2007 J jnl
Murlet: a practical multiple alignment tool for structural RNA sequences.
Bioinform.
Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi Asai
2006 J jnl
SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
Bioinform.
Yasuo Tabei, Koji Tsuda, Taishin Kin, Kiyoshi Asai