Yassene Mohammed

21 papers B 1Journal 10Unranked 9
YearRankTypeTitle / Venue / Authors
2025 J jnl
Privacy-preserving multicenter differential protein abundance analysis with FedProt.
Nat. Comput. Sci.
Yuliya Burankova, Miriam Abele, Mohammad Bakhtiari, Christine von Törne, Teresa Barth, Lisa Schweizer, Pieter Giesbertz, Johannes R. Schmidt, Stefan Kalkhof, Janina Müller-Deile, Peter A. van Veelen, Yassene Mohammed, Elke Hammer, Lis Arend, Klaudia Adamowicz, Tanja Laske, Anne Hartebrodt, Tobias Frisch, Chen Meng, Julian O. Matschinske, Julian Späth, Richard Röttger, Veit Schwämmle, Stefanie M. Hauck, Stefan F. Lichtenthaler, Axel Imhof, Matthias Mann, Christina Ludwig, Bernhard Küster, Jan Baumbach, Olga I. Zolotareva
2024 J jnl
Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt.
CoRR
Yuliya Burankova, Miriam Abele, Mohammad Bakhtiari, Christine von Törne, Teresa Barth, Lisa Schweizer, Pieter Giesbertz, Johannes R. Schmidt, Stefan Kalkhof, Janina Müller-Deile, Peter A. van Veelen, Yassene Mohammed, Elke Hammer, Lis Arend, Klaudia Adamowicz, Tanja Laske, Anne Hartebrodt, Tobias Frisch, Chen Meng, Julian O. Matschinske, Julian Späth, Richard Röttger, Veit Schwämmle, Stefanie M. Hauck, Stefan F. Lichtenthaler, Axel Imhof, Matthias Mann, Christina Ludwig, Bernhard Küster, Jan Baumbach, Olga I. Zolotareva
2021 J jnl
Mouse Quantitative Proteomics Knowledgebase: reference protein concentration ranges in 20 mouse tissues using 5000 quantitative proteomics assays.
Bioinform.
Yassene Mohammed, Pallab Bhowmick, Sarah A. Michaud, Albert Sickmann, Christoph H. Borchers
2018 J jnl
MRMAssayDB: an integrated resource for validated targeted proteomics assays.
Bioinform.
Pallab Bhowmick, Yassene Mohammed, Christoph H. Borchers
2018 J jnl
Visualizing and comparing results of different peptide identification methods.
Briefings Bioinform.
Yassene Mohammed, Magnus Palmblad
2018 — conf
Workflows Orchestrating Workflows: Thousands of Queries and Their Fault Tolerance Using APIs of Omics Web Resources.
eScience
Yassene Mohammed
2016 J jnl
Automating bibliometric analyses using Taverna scientific workflows: A tutorial on integrating Web Services.
J. Informetrics
Arzu Tugce Guler, Cathelijn J. F. Waaijer, Yassene Mohammed, Magnus Palmblad
2015 J jnl
Scientific workflow optimization for improved peptide and protein identification.
BMC Bioinform.
Sonja Holl, Yassene Mohammed, Olav Zimmermann, Magnus Palmblad
2014 J jnl
A new optimization phase for scientific workflow management systems.
Future Gener. Comput. Syst.
Sonja Holl, Olav Zimmermann, Magnus Palmblad, Yassene Mohammed, Martin Hofmann-Apitius
2014 — conf
Automatic Peptides Selection for Targeted Proteomics.
IWBBIO
Yassene Mohammed, Dominik Domanski, Angela M. Jackson, Derek Smith, André M. Deelder, Magnus Palmblad, Christoph H. Borchers
2014 J jnl
Privacy/performance trade-off in private search on bio-medical data.
Future Gener. Comput. Syst.
Henning Perl, Yassene Mohammed, Michael Brenner, Matthew Smith
2013 B conf
Enhanced Resource Management Enabling Standard Parameter Sweep Jobs for Scientific Applications.
ICPP
Sonja Holl, M. Shahbaz Memon, Bernd Schuller, Morris Riedel, Yassene Mohammed, Magnus Palmblad, Andrew S. Grimshaw
2012 — conf
Fast confidential search for bio-medical data using Bloom filters and Homomorphic Cryptography.
eScience
Henning Perl, Yassene Mohammed, Michael Brenner, Matthew Smith
2011 — conf
Data Decomposition in Biomedical e-Science Applications.
e-Science Workshops
Yassene Mohammed, Shayan Shahand, Vladimir Korkhov, Angela C. M. Luyf, Barbera D. C. van Schaik, Matthan W. A. Caan, Antoine H. C. van Kampen, Magnus Palmblad, Sílvia D. Olabarriaga
2010 — conf
On Transferring the Grid Technology to the Biomedical Community.
HealthGrid
Yassene Mohammed, Ulrich Sax, Frank Dickmann, Jörg Lippert, Juri Solodenko, Gabriele von Voigt, Matthew Smith, Otto Rienhoff
2010 — conf
Reaching for the Cloud: On the Lessons Learned from Grid Computing Technology Transfer Process to the Biomedical Community.
MedInfo
Yassene Mohammed, Frank Dickmann, Ulrich Sax, Gabriele von Voigt, Matthew Smith, Otto Rienhoff
2009 J jnl
MediGRID: Towards a user friendly secured grid infrastructure.
Future Gener. Comput. Syst.
Dagmar Krefting, Julian Bart, Kamen Beronov, Olga Dzhimova, Jürgen Falkner, Michael Hartung, Andreas Hoheisel, Tobias A. Knoch, Thomas Lingner, Yassene Mohammed, Kathrin Peter, Erhard Rahm, Ulrich Sax, Dietmar Sommerfeld, Thomas Steinke, Thomas Tolxdorff, Michal Vossberg, Fred Viezens, Anette Weisbecker
2009 — conf
Visualization in Health Grid Environments: A Novel Service and Business Approach.
GECON
Frank Dickmann, Mathias Kaspar, Benjamin Löhnhardt, Nick Kepper, Fred Viezens, Frank Hertel, Michael Lesnussa, Yassene Mohammed, Andreas Thiel, Thomas Steinke, Johannes Bernarding, Dagmar Krefting, Tobias A. Knoch, Ulrich Sax
2008 — —
Data protection and data security concept for medical applications in a grid computing environment.
Yassene Mohammed
2007 — conf
Shortcomings of Current Grid Middlewares Regarding Privacy in HealthGrids.
HealthGrid
Yassene Mohammed, Ulrich Sax, Fred Viezens, Otto Rienhoff
2007 — conf
The Integration of Grid Resources into a Portal for Research Collaboratories.
MedInfo
Yassene Mohammed, Sabine Rey, Fabian Rakebrandt, Ulrich Sax