Yanyi Chu - RankMe

14 papers Journal 14

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Self-supervised learning in drug discovery. Sci. China Inf. Sci. Yangyang Chen, Zixu Wang, Jianmin Wang, Yanyi Chu, Qingpeng Zhang, Zhong Alan Li, Xiangxiang Zeng
2024	J	`jnl`	A 5′ UTR language model for decoding untranslated regions of mRNA and function predictions. Nat. Mac. Intell. Yanyi Chu, Dan Yu, Yupeng Li, Kaixuan Huang, Yue Shen, Le Cong, Jason Zhang, Mengdi Wang
2024	J	`jnl`	Author Correction: A 5′ UTR language model for decoding untranslated regions of mRNA and function predictions. Nat. Mac. Intell. Yanyi Chu, Dan Yu, Yupeng Li, Kaixuan Huang, Yue Shen, Le Cong, Jason Zhang, Mengdi Wang
2024	J	`jnl`	Latent Diffusion Models for Controllable RNA Sequence Generation. CoRR Kaixuan Huang, Yukang Yang, Kaidi Fu, Yanyi Chu, Le Cong, Mengdi Wang
2024	J	`jnl`	ReHoGCNES-MDA: prediction of miRNA-disease associations using homogenous graph convolutional networks based on regular graph with random edge sampler. Briefings Bioinform. Yufang Zhang, Yanyi Chu, Shenggeng Lin, Yi Xiong, Dong-Qing Wei
2022	J	`jnl`	A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design. Nat. Mach. Intell. Yanyi Chu, Yan Zhang, Qiankun Wang, Lingfeng Zhang, Xuhong Wang, Yanjing Wang, Dennis Russell Salahub, Qin Xu, Jianmin Wang, Xue Jiang, Yi Xiong, Dong-Qing Wei
2022	J	`jnl`	MDF-SA-DDI: predicting drug-drug interaction events based on multi-source drug fusion, multi-source feature fusion and transformer self-attention mechanism. Briefings Bioinform. Shenggeng Lin, Yanjing Wang, Lingfeng Zhang, Yanyi Chu, Yatong Liu, Yitian Fang, Mingming Jiang, Qiankun Wang, Bowen Zhao, Yi Xiong, Dong-Qing Wei
2021	J	`jnl`	DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features. Briefings Bioinform. Yanyi Chu, Aman Chandra Kaushik, Xiangeng Wang, Wei Wang, Yufang Zhang, Xiaoqi Shan, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei
2021	J	`jnl`	DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method. Briefings Bioinform. Yanyi Chu, Xiaoqi Shan, Tianhang Chen, Mingming Jiang, Yanjing Wang, Qiankun Wang, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei
2021	J	`jnl`	MDA-CF: Predicting MiRNA-Disease associations based on a cascade forest model by fusing multi-source information. Comput. Biol. Medicine Qiuying Dai, Yanyi Chu, Zhiqi Li, Yusong Zhao, Xueying Mao, Yanjing Wang, Yi Xiong, Dong-Qing Wei
2021	J	`jnl`	MDA-GCNFTG: identifying miRNA-disease associations based on graph convolutional networks via graph sampling through the feature and topology graph. Briefings Bioinform. Yanyi Chu, Xuhong Wang, Qiuying Dai, Yanjing Wang, Qiankun Wang, Shaoliang Peng, Xiaoyong Wei, Jingfei Qiu, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei
2021	J	`jnl`	NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods. Briefings Bioinform. Mingming Jiang, Bowen Zhao, Shenggan Luo, Qiankun Wang, Yanyi Chu, Tianhang Chen, Xueying Mao, Yatong Liu, Yanjing Wang, Xue Jiang, Dong-Qing Wei, Yi Xiong
2021	J	`jnl`	Prediction of Blood-Brain Barrier Permeability of Compounds by Fusing Resampling Strategies and eXtreme Gradient Boosting. IEEE Access Zhiwen Shi, Yanyi Chu, Yonghong Zhang, Yanjing Wang, Dong-Qing Wei
2019	J	`jnl`	Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method. J. Chem. Inf. Model. Xiaoqi Shan, Xiangeng Wang, Cheng-Dong Li, Yanyi Chu, Yufang Zhang, Yi Xiong, Dong-Qing Wei