Yanjun Li - RankMe

18 papers A* 1Journal 15Unranked 2

Year	Rank	Type	Title / Venue / Authors
2026	A*	`conf`	Apo2Mol: 3D Molecule Generation via Dynamic Pocket-Aware Diffusion Models. AAAI Xinzhe Zheng, Shiyu Jiang, Gustavo de M. Seabra, Chenglong Li, Yanjun Li
2025	J	`jnl`	Apo2Mol: 3D Molecule Generation via Dynamic Pocket-Aware Diffusion Models. CoRR Xinzhe Zheng, Shiyu Jiang, Gustavo de M. Seabra, Chenglong Li, Yanjun Li
2025	J	`jnl`	DecoyDB: A Dataset for Graph Contrastive Learning in Protein-Ligand Binding Affinity Prediction. CoRR Yupu Zhang, Zelin Xu, Tingsong Xiao, Gustavo de M. Seabra, Yanjun Li, Chenglong Li, Zhe Jiang
2025	J	`jnl`	Improving Covalent and Noncovalent Molecule Generation via Reinforcement Learning with Functional Fragments. J. Chem. Inf. Model. Yongrui Wang, Zhen Wang, Yanjun Li, Pengju Yan, Xiaolin Li
2024	J	`jnl`	AptaDiff: de novo design and optimization of aptamers based on diffusion models. Briefings Bioinform. Zhen Wang, Ziqi Liu, Wei Zhang, Yanjun Li, Yizhen Feng, Shaokang Lv, Han Diao, Zhaofeng Luo, Pengju Yan, Min He, Xiaolin Li
2024	J	`jnl`	BatmanNet: bi-branch masked graph transformer autoencoder for molecular representation. Briefings Bioinform. Zhen Wang, Zheng Feng, Yanjun Li, Bowen Li, Yongrui Wang, Chulin Sha, Min He, Xiaolin Li
2024	J	`jnl`	Morphological profiling for drug discovery in the era of deep learning. Briefings Bioinform. Qiaosi Tang, Ranjala Ratnayake, Gustavo de M. Seabra, Zhe Jiang, Ruogu Fang, Lina Cui, Yousong Ding, Tamer Kahveci, Jiang Bian, Chenglong Li, Hendrik Luesch, Yanjun Li
2023	J	`jnl`	Identifying acute illness phenotypes via deep temporal interpolation and clustering network on physiologic signatures. CoRR Yuanfang Ren, Yanjun Li, Tyler J. Loftus, Jeremy A. Balch, Kenneth L. Abbott, Shounak Datta, Matthew M. Ruppert, Ziyuan Guan, Benjamin Shickel, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
2023	J	`jnl`	Morphological Profiling for Drug Discovery in the Era of Deep Learning. CoRR Qiaosi Tang, Ranjala Ratnayake, Gustavo de M. Seabra, Zhe Jiang, Ruogu Fang, Lina Cui, Yousong Ding, Tamer Kahveci, Jiang Bian, Chenglong Li, Hendrik Luesch, Yanjun Li
2022	J	`jnl`	BatmanNet: Bi-branch Masked Graph Transformer Autoencoder for Molecular Representation. CoRR Zhen Wang, Zheng Feng, Yanjun Li, Bowen Li, Yongrui Wang, Chulin Sha, Min He, Xiaolin Li
2022	J	`jnl`	Deep Learning in Drug Design: Protein-Ligand Binding Affinity Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. Mohammad A. Rezaei, Yanjun Li, Dapeng Wu, Xiaolin Li, Chenglong Li
2022	J	`jnl`	DyScore: A Boosting Scoring Method with Dynamic Properties for Identifying True Binders and Nonbinders in Structure-Based Drug Discovery. J. Chem. Inf. Model. Yanjun Li, Daohong Zhou, Guangrong Zheng, Xiaolin Li, Dapeng Wu, Yaxia Yuan
2020	J	`jnl`	Application of Deep Interpolation Network for Clustering of Physiologic Time Series. CoRR Yanjun Li, Yuanfang Ren, Tyler J. Loftus, Shounak Datta, Matthew Ruppert, Ziyuan Guan, Dapeng Oliver Wu, Parisa Rashidi, Tezcan Ozrazgat-Baslanti, Azra Bihorac
2020	J	`jnl`	PRI-VAE: Principle-of-Relevant-Information Variational Autoencoders. CoRR Yanjun Li, Shujian Yu, José C. Príncipe, Xiaolin Li, Dapeng Oliver Wu
2019	—	`conf`	DeepAtom: A Framework for Protein-Ligand Binding Affinity Prediction. BIBM Yanjun Li, Mohammad A. Rezaei, Chenglong Li, Xiaolin Li
2019	J	`jnl`	DeepAtom: A Framework for Protein-Ligand Binding Affinity Prediction. CoRR Yanjun Li, Mohammad A. Rezaei, Chenglong Li, Xiaolin Li, Dapeng Oliver Wu
2018	J	`jnl`	FoldingZero: Protein Folding from Scratch in Hydrophobic-Polar Model. CoRR Yanjun Li, Hengtong Kang, Ketian Ye, Shuyu Yin, Xiaolin Li
2017	—	`conf`	Character Sequence-to-Sequence Model with Global Attention for Universal Morphological Reinflection. CoNLL Shared Task (1) Qile Zhu, Yanjun Li, Xiaolin Li