Yanjun Gao - RankMe

68 papers A* 1B 4C 2Misc 1Journal 46Unranked 14

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Explainable multimodal deep learning models for variable-length sequences in critically ill patients. J. Biomed. Informatics Jennifer Martin, Majid Afshar, Askar Safipour Afshar, John R. Caskey, Dmitriy Dligach, Yanjun Gao, Jifan Gao, Guanhua Chen, Anoop M. Mayampurath, Matthew M. Churpek
2026	J	`jnl`	Race, Ethnicity and Their Implication on Bias in Large Language Models. CoRR Shiyue Hu, Ruizhe Li, Yanjun Gao
2025	J	`jnl`	"It Felt Like I Was Left in the Dark": Exploring Information Needs and Design Opportunities for Family Caregivers of Older Adult Patients in Critical Care Settings. CoRR Shihan Fu, Bingsheng Yao, Smit Desai, Yuqi Hu, Yuling Sun, Samantha Stonbraker, Yanjun Gao, Elizabeth M. Goldberg, Dakuo Wang
2025	J	`jnl`	An Information-Theoretic Perspective on Multi-LLM Uncertainty Estimation. CoRR Maya Kruse, Majid Afshar, Saksham Khatwani, Anoop M. Mayampurath, Guanhua Chen, Yanjun Gao
2025	—	`conf`	Anchored Answers: Unravelling Positional Bias in GPT-2's Multiple-Choice Questions. ACL (Findings) Ruizhe Li, Yanjun Gao
2025	J	`jnl`	Attributing Response to Context: A Jensen-Shannon Divergence Driven Mechanistic Study of Context Attribution in Retrieval-Augmented Generation. CoRR Ruizhe Li, Chen Chen, Yuchen Hu, Yanjun Gao, Xi Wang, Emine Yilmaz
2025	J	`jnl`	Brittleness and Promise: Knowledge Graph Based Reward Modeling for Diagnostic Reasoning. CoRR Saksham Khatwani, He Cheng, Majid Afshar, Dmitriy Dligach, Yanjun Gao
2025	J	`jnl`	Development and Validation of the Provider Documentation Summarization Quality Instrument for Large Language Models. CoRR Emma Croxford, Yanjun Gao, Nicholas Pellegrino, Karen K. Wong, Graham Wills, Elliot First, Miranda Schnier, Kyle Burton, Cris G. Ebby, Jillian Gorskic, Matthew Kalscheur, Samy Khalil, Marie Pisani, Tyler Rubeor, Peter D. Stetson, Frank J. Liao, Cherodeep Goswami, Brian W. Patterson, Majid Afshar
2025	J	`jnl`	Development and validation of the provider documentation summarization quality instrument for large language models. J. Am. Medical Informatics Assoc. Emma Croxford, Yanjun Gao, Nicholas Pellegrino, Karen K. Wong, Graham Wills, Elliot First, Miranda Schnier, Kyle Burton, Cris G. Ebby, Jillian Gorskic, Matthew Kalscheur, Samy Khalil, Marie Pisani, Tyler Rubeor, Peter D. Stetson, Frank J. Liao, Cherodeep Goswami, Brian W. Patterson, Majid Afshar
2025	J	`jnl`	Evaluating Retrieval-Augmented Generation vs. Long-Context Input for Clinical Reasoning over EHRs. CoRR Skatje Myers, Dmitriy Dligach, Timothy A. Miller, Samantha Barr, Yanjun Gao, Matthew M. Churpek, Anoop M. Mayampurath, Majid Afshar
2025	J	`jnl`	Evaluating clinical AI summaries with large language models as judges. npj Digit. Medicine Emma Croxford, Yanjun Gao, Elliot First, Nicholas Pellegrino, Miranda Schnier, John R. Caskey, Madeline Oguss, Graham Wills, Guanhua Chen, Dmitriy Dligach, Matthew M. Churpek, Anoop M. Mayampurath, Frank J. Liao, Cherodeep Goswami, Karen K. Wong, Brian W. Patterson, Majid Afshar
2025	J	`jnl`	Explaining alerts from a pediatric risk prediction model using clinical text. J. Am. Medical Informatics Assoc. Samuel Nycklemoe, Sriharsha Devarapu, Yanjun Gao, Kyle A. Carey, Nicholas Kuehnel, Neil Munjal, Priti Jani, Matthew M. Churpek, Dmitriy Dligach, Majid Afshar, Anoop M. Mayampurath
2025	—	`conf`	Hierarchical Transformer for Panoramic Image Inpainting with Comprehensive Attention Module. ICIG (2) Li Yu, Yanjun Gao, Yihang Yin, Farhad Pakdaman, Moncef Gabbouj
2025	J	`jnl`	LCD benchmark: long clinical document benchmark on mortality prediction for language models. J. Am. Medical Informatics Assoc. Wonjin Yoon, Shan Chen, Yanjun Gao, Zhanzhan Zhao, Dmitriy Dligach, Danielle S. Bitterman, Majid Afshar, Timothy A. Miller
2025	—	`conf`	Large Language Models with Temporal Reasoning for Longitudinal Clinical Summarization and Prediction. EMNLP (Findings) Maya Kruse, Shiyue Hu, Nicholas Derby, Yifu Wu, Samantha Stonbraker, Bingsheng Yao, Dakuo Wang, Elizabeth M. Goldberg, Yanjun Gao
2025	J	`jnl`	Large language models management of medications: three performance analyses. CoRR Kelli Henry, Steven Xu, Kaitlin Blotske, Moriah Cargile, Erin F. Barreto, Brian Murray, Susan E. Smith, Seth R. Bauer, Yanjun Gao, Tianming Liu, Andrea Sikora
2025	J	`jnl`	Lessons learned on information retrieval in electronic health records: a comparison of embedding models and pooling strategies. J. Am. Medical Informatics Assoc. Skatje Myers, Timothy A. Miller, Yanjun Gao, Matthew M. Churpek, Anoop M. Mayampurath, Dmitriy Dligach, Majid Afshar
2025	A*	`conf`	Simple Yet Effective: An Information-Theoretic Approach to Multi-LLM Uncertainty Quantification. EMNLP Maya Kruse, Majid Afshar, Saksham Khatwani, Anoop M. Mayampurath, Guanhua Chen, Yanjun Gao
2025	J	`jnl`	Toward digital twins in the intensive care unit: a medication management case study. J. Am. Medical Informatics Assoc. Behnaz Eslami, Majid Afshar, Samie Tootooni, Timothy A. Miller, Matthew M. Churpek, Yanjun Gao, Dmitriy Dligach
2025	J	`jnl`	Uncovering Hidden Violent Tendencies in LLMs: A Demographic Analysis via Behavioral Vignettes. CoRR Quintin Myers, Yanjun Gao
2025	J	`jnl`	Zero-shot Large Language Models for Long Clinical Text Summarization with Temporal Reasoning. CoRR Maya Kruse, Shiyue Hu, Nicholas Derby, Yifu Wu, Samantha Stonbraker, Bingsheng Yao, Dakuo Wang, Elizabeth M. Goldberg, Yanjun Gao
2024	J	`jnl`	Anchored Answers: Unravelling Positional Bias in GPT-2's Multiple-Choice Questions. CoRR Ruizhe Li, Yanjun Gao
2024	J	`jnl`	Clinical natural language processing for secondary uses. J. Biomed. Informatics Yanjun Gao, Diwakar Mahajan, Özlem Uzuner, Meliha Yetisgen
2024	J	`jnl`	Evaluation of Large Language Models for Summarization Tasks in the Medical Domain: A Narrative Review. CoRR Emma Croxford, Yanjun Gao, Nicholas Pellegrino, Karen K. Wong, Graham Wills, Elliot First, Frank J. Liao, Cherodeep Goswami, Brian W. Patterson, Majid Afshar
2024	J	`jnl`	Exploring Interdisciplinary Team Collaboration in Clinical NLP Projects Through the Lens of Activity Theory. CoRR Bingsheng Yao, Yao Du, Yue Fu, Xuhai Xu, Yanjun Gao, Hong Yu, Dakuo Wang
2024	J	`jnl`	Improving Clinical NLP Performance through Language Model-Generated Synthetic Clinical Data. CoRR Shan Chen, Jack Gallifant, Marco Guevara, Yanjun Gao, Majid Afshar, Timothy Miller, Dmitriy Dligach, Danielle S. Bitterman
2024	—	`conf`	Learning to Maximize Mutual Information for Chain-of-Thought Distillation. ACL (Findings) Xin Chen, Hanxian Huang, Yanjun Gao, Yi Wang, Jishen Zhao, Ke Ding
2024	J	`jnl`	Learning to Maximize Mutual Information for Chain-of-Thought Distillation. CoRR Xin Chen, Hanxian Huang, Yanjun Gao, Yi Wang, Jishen Zhao, Ke Ding
2024	J	`jnl`	Lessons Learned on Information Retrieval in Electronic Health Records: A Comparison of Embedding Models and Pooling Strategies. CoRR Skatje Myers, Timothy A. Miller, Yanjun Gao, Matthew M. Churpek, Anoop M. Mayampurath, Dmitriy Dligach, Majid Afshar
2024	J	`jnl`	On the role of the UMLS in supporting diagnosis generation proposed by Large Language Models. J. Biomed. Informatics Majid Afshar, Yanjun Gao, Deepak Gupta, Emma Croxford, Dina Demner-Fushman
2024	J	`jnl`	Panoramic Image Inpainting With Gated Convolution And Contextual Reconstruction Loss. CoRR Li Yu, Yanjun Gao, Farhad Pakdaman, Moncef Gabbouj
2024	Misc	`conf`	Panoramic Image Inpainting with Gated Convolution and Contextual Reconstruction Loss. ICASSP Li Yu, Yanjun Gao, Farhad Pakdaman, Moncef Gabbouj
2024	J	`jnl`	Position Paper On Diagnostic Uncertainty Estimation from Large Language Models: Next-Word Probability Is Not Pre-test Probability. CoRR Yanjun Gao, Skatje Myers, Shan Chen, Dmitriy Dligach, Timothy A. Miller, Danielle S. Bitterman, Guanhua Chen, Anoop M. Mayampurath, Matthew M. Churpek, Majid Afshar
2024	—	`conf`	When Raw Data Prevails: Are Large Language Model Embeddings Effective in Numerical Data Representation for Medical Machine Learning Applications? EMNLP (Findings) Yanjun Gao, Skatje Myers, Shan Chen, Dmitriy Dligach, Timothy A. Miller, Danielle S. Bitterman, Matthew M. Churpek, Majid Afshar
2024	J	`jnl`	When Raw Data Prevails: Are Large Language Model Embeddings Effective in Numerical Data Representation for Medical Machine Learning Applications? CoRR Yanjun Gao, Skatje Myers, Shan Chen, Dmitriy Dligach, Timothy A. Miller, Danielle S. Bitterman, Matthew M. Churpek, Majid Afshar
2023	J	`jnl`	DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing. J. Biomed. Informatics Yanjun Gao, Dmitriy Dligach, Timothy Miller, John R. Caskey, Brihat Sharma, Matthew M. Churpek, Majid Afshar
2023	J	`jnl`	Improving model transferability for clinical note section classification models using continued pretraining. J. Am. Medical Informatics Assoc. Weipeng Zhou, Meliha Yetisgen, Majid Afshar, Yanjun Gao, Guergana Savova, Timothy A. Miller
2023	—	`conf`	Improving the Transferability of Clinical Note Section Classification Models with BERT and Large Language Model Ensembles. ClinicalNLP@ACL Weipeng Zhou, Majid Afshar, Dmitriy Dligach, Yanjun Gao, Timothy A. Miller
2023	J	`jnl`	Leveraging A Medical Knowledge Graph into Large Language Models for Diagnosis Prediction. CoRR Yanjun Gao, Ruizhe Li, John R. Caskey, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Majid Afshar
2023	—	`conf`	Multi-Task Training with In-Domain Language Models for Diagnostic Reasoning. ClinicalNLP@ACL Brihat Sharma, Yanjun Gao, Timothy Miller, Matthew M. Churpek, Majid Afshar, Dmitriy Dligach
2023	J	`jnl`	Multi-Task Training with In-Domain Language Models for Diagnostic Reasoning. CoRR Brihat Sharma, Yanjun Gao, Timothy Miller, Matthew M. Churpek, Majid Afshar, Dmitriy Dligach
2023	—	`conf`	Overview of the Problem List Summarization (ProbSum) 2023 Shared Task on Summarizing Patients' Active Diagnoses and Problems from Electronic Health Record Progress Notes. BioNLP@ACL Yanjun Gao, Dmitriy Dligach, Timothy Miller, Majid Afshar
2023	J	`jnl`	Overview of the Problem List Summarization (ProbSum) 2023 Shared Task on Summarizing Patients' Active Diagnoses and Problems from Electronic Health Record Progress Notes. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Majid Afshar
2023	J	`jnl`	Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 Shared Task. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Özlem Uzuner, Majid Afshar
2023	J	`jnl`	Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 shared task. J. Biomed. Informatics Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Özlem Uzuner, Majid Afshar
2022	J	`jnl`	A bibliometric analysis of online faculty professional development in higher education. Res. Pract. Technol. Enhanc. Learn. Yanjun Gao, Su Luan Wong, Mas Nida Md. Khambari, Nooreen Noordin
2022	J	`jnl`	A scoping review of publicly available language tasks in clinical natural language processing. J. Am. Medical Informatics Assoc. Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy Miller, Özlem Uzuner, Matthew M. Churpek, Majid Afshar
2022	J	`jnl`	Analytical Techniques for Developing Argumentative Writing in STEM: A Pilot Study. IEEE Trans. Educ. Patricia Marybelle Davies, Rebecca J. Passonneau, Smaranda Muresan, Yanjun Gao
2022	J	`jnl`	Call for papers: Special issue on clinical natural language processing for secondary use applications. J. Biomed. Informatics Meliha Yetisgen, Özlem Uzuner, Yanjun Gao, Diwakar Mahajan
2022	C	`conf`	Chinese EFL Teachers' Reflections of Online English Teaching during the COVID-19 Pandemic: A Qualitative Study. ICCE Yanjun Gao, Su Luan Wong, Mas Nida Md. Khambari, Nooreen Noordin, Jingxin Geng
2022	J	`jnl`	DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, John R. Caskey, Brihat Sharma, Matthew M. Churpek, Majid Afshar
2022	B	`conf`	Hierarchical Annotation for Building A Suite of Clinical Natural Language Processing Tasks: Progress Note Understanding. LREC Yanjun Gao, Dmitriy Dligach, Timothy Miller, Samuel Tesch, Ryan Laffin, Matthew M. Churpek, Majid Afshar
2022	J	`jnl`	Hierarchical Annotation for Building A Suite of Clinical Natural Language Processing Tasks: Progress Note Understanding. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, Samuel Tesch, Ryan Laffin, Matthew M. Churpek, Majid Afshar
2022	J	`jnl`	Summarizing Patients Problems from Hospital Progress Notes Using Pre-trained Sequence-to-Sequence Models. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, Dongfang Xu, Matthew M. Churpek, Majid Afshar
2022	B	`conf`	Summarizing Patients' Problems from Hospital Progress Notes Using Pre-trained Sequence-to-Sequence Models. COLING Yanjun Gao, Dmitriy Dligach, Timothy Miller, Dongfang Xu, Matthew M. Churpek, Majid Afshar
2021	J	`jnl`	A Scoping Review of Publicly Available Language Tasks in Clinical Natural Language Processing. CoRR Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy Miller, Özlem Uzuner, Matthew M. Churpek, Majid Afshar
2021	—	`conf`	ABCD: A Graph Framework to Convert Complex Sentences to a Covering Set of Simple Sentences. ACL/IJCNLP (1) Yanjun Gao, Ting-Hao Kenneth Huang, Rebecca J. Passonneau
2021	J	`jnl`	ABCD: A Graph Framework to Convert Complex Sentences to a Covering Set of Simple Sentences. CoRR Yanjun Gao, Ting-Hao Kenneth Huang, Rebecca J. Passonneau
2021	—	`conf`	Automated Assessment of Quality and Coverage of Ideas in Students' Source-Based Writing. AIED (2) Yanjun Gao, Rebecca J. Passonneau
2021	J	`jnl`	EVOQUER: Enhancing Temporal Grounding with Video-Pivoted BackQuery Generation. CoRR Yanjun Gao, Lulu Liu, Jason Wang, Xin Chen, Huayan Wang, Rui Zhang
2021	C	`conf`	Predictors of English as a Foreign Language (EFL) Teachers' Acceptance of Online Teaching in Higher Education Institutions in China. ICCE Yanjun Gao, Su Luan Wong, Mas Nida Md. Khambari
2019	J	`jnl`	A Vision Based Detection Method for Narrow Butt Joints and a Robotic Seam Tracking System. Sensors Boce Xue, Baohua Chang, Guodong Peng, Yanjun Gao, Zhijie Tian, Dong Du, Guoqing Wang
2019	B	`conf`	Automated Pyramid Summarization Evaluation. CoNLL Yanjun Gao, Chen Sun, Rebecca J. Passonneau
2019	—	`conf`	Rubric Reliability and Annotation of Content and Argument in Source-Based Argument Essays. BEA@ACL Yanjun Gao, Alex Driban, Brennan Xavier McManus, Elena Musi, Patricia Marybelle Davies, Smaranda Muresan, Rebecca J. Passonneau
2018	—	`conf`	Automated Content Analysis: A Case Study of Computer Science Student Summaries. BEA@NAACL-HLT Yanjun Gao, Patricia Marybelle Davies, Rebecca J. Passonneau
2018	B	`conf`	PyrEval: An Automated Method for Summary Content Analysis. LREC Yanjun Gao, Andrew Warner, Rebecca J. Passonneau
2017	—	`conf`	ShopWithMe!: Collaborative Information Searching and Shopping for Online Retail. HICSS Yanjun Gao, Madhu C. Reddy, Bernard J. Jansen
2016	—	`conf`	Shop Together, Search Together: Collaborative E-commerce. CHI Extended Abstracts Yanjun Gao, Madhu C. Reddy, Bernard J. Jansen