Yanjing Wang

17 papers Journal 17
YearRankTypeTitle / Venue / Authors
2025 J jnl
GATRsite: RNA-Ligand Binding Site Prediction Using Graph Attention Networks and Pretrained RNA Language Models.
J. Chem. Inf. Model.
Chuance Sun, Linghao Zhang, Lingfeng Zhang, Yuehua Song, Buyong Ma, Yanjing Wang
2025 J jnl
SageTCR: a structure-based model integrating residue- and atom-level representations for enhanced TCR-pMHC binding prediction.
Briefings Bioinform.
Xiangyi Li, Chuance Sun, Weiran Huang, Yanjing Wang, Buyong Ma
2023 J jnl
Inhibition of cMYC-MAX transcription factors hetero-dimerization with structurally engineered omoMYC to downregulate oncogenic pathways in renal carcinoma.
Comput. Biol. Medicine
Wenfeng Li, Farah Bano, Abbas Khan, Dong-Qing Wei, Abdulrahman Alshammari, Bin Xu, Yanjing Wang
2023 J jnl
Proteomics-based vaccine targets annotation and design of subunit and mRNA-based vaccines for Monkeypox virus (MPXV) against the recent outbreak.
Comput. Biol. Medicine
Yifan Jin, Addeela Fayyaz, Ayesha Liaqat, Abbas Khan, Abdulrahman Alshammari, Yanjing Wang, Ruo-Xu Gu, Dong-Qing Wei
2022 J jnl
A protein coupling and molecular simulation analysis of the clinical mutants of androgen receptor revealed a higher binding for Leupaxin, to increase the prostate cancer invasion and motility.
Comput. Biol. Medicine
Abbas Khan, Wenfeng Li, Amna Ambreen, Dong-Qing Wei, Yanjing Wang, Yuanshen Mao
2022 J jnl
A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design.
Nat. Mach. Intell.
Yanyi Chu, Yan Zhang, Qiankun Wang, Lingfeng Zhang, Xuhong Wang, Yanjing Wang, Dennis Russell Salahub, Qin Xu, Jianmin Wang, Xue Jiang, Yi Xiong, Dong-Qing Wei
2022 J jnl
Discovering potent inhibitors against the Mpro of the SARS-CoV-2. A medicinal chemistry approach.
Comput. Biol. Medicine
Aamir Mehmood, Sadia Nawab, Yanjing Wang, Aman Chandra Kaushik, Dong-Qing Wei
2022 J jnl
Evaluation and identification of essential therapeutic proteins and vaccinomics approach towards multi-epitopes vaccine designing against
Comput. Biol. Medicine
Ismail Shah, Sehrooz Jamil, Saira Rehmat, Hammad Ahmad Butt, Syed Shujait Ali, Muhammad Idrees, Yifei Zhan, Zahid Hussain, Shahid Ali, Muhammad Waseem, Arshad Iqbal, Sajjad Ahmad, Abbas Khan, Yanjing Wang, Dong-Qing Wei
2022 J jnl
MDF-SA-DDI: predicting drug-drug interaction events based on multi-source drug fusion, multi-source feature fusion and transformer self-attention mechanism.
Briefings Bioinform.
Shenggeng Lin, Yanjing Wang, Lingfeng Zhang, Yanyi Chu, Yatong Liu, Yitian Fang, Mingming Jiang, Qiankun Wang, Bowen Zhao, Yi Xiong, Dong-Qing Wei
2022 J jnl
Subtractive proteomics assisted therapeutic targets mining and designing ensemble vaccine against
Comput. Biol. Medicine
Taimoor Khan, Muhammad Suleman, Syed Shujait Ali, Muhammad Farhan Sarwar, Imtiaz Ali, Liaqat Ali, Abbas Khan, Bakht Rokhan, Yanjing Wang, Ruili Zhao, Dong-Qing Wei
2021 J jnl
Bioinformatics analysis of the differences in the binding profile of the wild-type and mutants of the SARS-CoV-2 spike protein variants with the ACE2 receptor.
Comput. Biol. Medicine
Muhammad Suleman, Qudsia Yousafi, Javaid Ali, Syed Shujait Ali, Zahid Hussain, Shahid Ali, Muhammad Waseem, Arshad Iqbal, Sajjad Ahmad, Abbas Khan, Yanjing Wang, Dong-Qing Wei
2021 J jnl
DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method.
Briefings Bioinform.
Yanyi Chu, Xiaoqi Shan, Tianhang Chen, Mingming Jiang, Yanjing Wang, Qiankun Wang, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei
2021 J jnl
Irinotecan and vandetanib create synergies for treatment of pancreatic cancer patients with concomitant TP53 and KRAS mutations.
Briefings Bioinform.
Aman Chandra Kaushik, Yanjing Wang, Xiangeng Wang, Dong-Qing Wei
2021 J jnl
MDA-CF: Predicting MiRNA-Disease associations based on a cascade forest model by fusing multi-source information.
Comput. Biol. Medicine
Qiuying Dai, Yanyi Chu, Zhiqi Li, Yusong Zhao, Xueying Mao, Yanjing Wang, Yi Xiong, Dong-Qing Wei
2021 J jnl
MDA-GCNFTG: identifying miRNA-disease associations based on graph convolutional networks via graph sampling through the feature and topology graph.
Briefings Bioinform.
Yanyi Chu, Xuhong Wang, Qiuying Dai, Yanjing Wang, Qiankun Wang, Shaoliang Peng, Xiaoyong Wei, Jingfei Qiu, Dennis Russell Salahub, Yi Xiong, Dong-Qing Wei
2021 J jnl
NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods.
Briefings Bioinform.
Mingming Jiang, Bowen Zhao, Shenggan Luo, Qiankun Wang, Yanyi Chu, Tianhang Chen, Xueying Mao, Yatong Liu, Yanjing Wang, Xue Jiang, Dong-Qing Wei, Yi Xiong
2021 J jnl
Prediction of Blood-Brain Barrier Permeability of Compounds by Fusing Resampling Strategies and eXtreme Gradient Boosting.
IEEE Access
Zhiwen Shi, Yanyi Chu, Yonghong Zhang, Yanjing Wang, Dong-Qing Wei