Yang Young Lu

19 papers A* 3Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2025 — conf
Interactive Training: Feedback-Driven Neural Network Optimization.
EMNLP (System Demonstrations)
Wentao Zhang, Yang Young Lu, Yuntian Deng
2025 J jnl
Interactive Training: Feedback-Driven Neural Network Optimization.
CoRR
Wentao Zhang, Yang Young Lu, Yuntian Deng
2025 J jnl
PhyloMix: enhancing microbiome-trait association prediction through phylogeny-mixing augmentation.
Bioinform.
Yifan Jiang, Disen Liao, Qiyun Zhu, Yang Young Lu
2025 J jnl
Securing diagonal integration of multimodal single-cell data against ambiguous mapping.
Bioinform.
Han Zhou, Kai Cao, Yang Young Lu
2024 J jnl
A BLAST from the past: revisiting blastp's
Bioinform.
Yang Young Lu, William Stafford Noble, Uri Keich
2024 J jnl
Error-controlled non-additive interaction discovery in machine learning models.
CoRR
Winston Chen, Yifan Jiang, William Stafford Noble, Yang Young Lu
2023 J jnl
DeepROCK: Error-controlled interaction detection in deep neural networks.
CoRR
Winston Chen, William Stafford Noble, Yang Young Lu
2022 J jnl
Metric learning for comparing genomic data with triplet network.
Briefings Bioinform.
Zhi Ma, Yang Young Lu, Yiwen Wang, Renhao Lin, Zizi Yang, Fang Zhang, Ying Wang
2021 A* conf
ACE: Explaining cluster from an adversarial perspective.
ICML
Yang Young Lu, Timothy C. Yu, Giancarlo Bonora, William Stafford Noble
2021 J jnl
CRAFT: Compact genome Representation toward large-scale Alignment-Free daTabase.
Bioinform.
Yang Young Lu, Jiaxing Bai, Yiwen Wang, Ying Wang, Fengzhu Sun
2021 A* conf
DANCE: Enhancing saliency maps using decoys.
ICML
Yang Young Lu, Wenbo Guo, Xinyu Xing, William Stafford Noble
2021 J jnl
DIAmeter: matching peptides to data-independent acquisition mass spectrometry data.
Bioinform.
Yang Young Lu, Jeff A. Bilmes, Ricard A. Rodriguez-Mias, Judit Villén, William Stafford Noble
2019 J jnl
Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.
PLoS Comput. Biol.
David F. Read, Kate Cook, Yang Young Lu, Karine G. Le Roch, William Stafford Noble
2019 J jnl
SolidBin: improving metagenome binning with semi-supervised normalized cut.
Bioinform.
Ziye Wang, Zhengyang Wang, Yang Young Lu, Fengzhu Sun, Shanfeng Zhu
2018 A* conf
DeepPINK: reproducible feature selection in deep neural networks.
NeurIPS
Yang Young Lu, Yingying Fan, Jinchi Lv, William Stafford Noble
2018 J jnl
DeepPINK: reproducible feature selection in deep neural networks.
CoRR
Yang Young Lu, Yingying Fan, Jinchi Lv, William Stafford Noble
2017 J jnl
CAFE: aCcelerated Alignment-FrEe sequence analysis.
Nucleic Acids Res.
Yang Young Lu, Kujin Tang, Jie Ren, Jed A. Fuhrman, Michael S. Waterman, Fengzhu Sun
2017 J jnl
COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.
Bioinform.
Yang Young Lu, Ting Chen, Jed A. Fuhrman, Fengzhu Sun
2017 J jnl
Improving contig binning of metagenomic data using (d
BMC Bioinform.
Ying Wang, Kun Wang, Yang Young Lu, Fengzhu Sun