Yang Cao - RankMe

44 papers A* 2C 2Misc 2Journal 20Unranked 18

Year	Rank	Type	Title / Venue / Authors
2025	A*	`conf`	Hierarchical Gradient-Based Genetic Sampling for Accurate Prediction of Biological Oscillations. AAAI Heng Rao, Yu Gu, Jason Zipeng Zhang, Ge Yu, Yang Cao, Minghan Chen
2024	J	`jnl`	Hierarchical Gradient-Based Genetic Sampling for Accurate Prediction of Biological Oscillations. CoRR Heng Rao, Yu Gu, Jason Zipeng Zhang, Ge Yu, Yang Cao, Minghan Chen
2022	J	`jnl`	Modeling the temporal dynamics of master regulators and CtrA proteolysis in Caulobacter crescentus cell cycle. PLoS Comput. Biol. Chunrui Xu, Henry Hollis, Michelle Dai, Xiangyu Yao, Layne T. Watson, Yang Cao, Minghan Chen
2021	—	`conf`	A spatiotemporal model of polarity and spatial gradient establishment in BCB Chunrui Xu, Yang Cao
2020	J	`jnl`	Cell cycle control and environmental response by second messengers in Caulobacter crescentus. BMC Bioinform. Chunrui Xu, Bronson R. Weston, John J. Tyson, Yang Cao
2019	J	`jnl`	A stochastic model of size control in the budding yeast cell cycle. BMC Bioinform. Mansooreh Ahmadian, John J. Tyson, Yang Cao
2019	J	`jnl`	Analysis and remedy of negativity problem in hybrid stochastic simulation algorithm and its application. BMC Bioinform. Minghan Chen, Yang Cao
2018	—	`conf`	A Stochastic Model of Size Control in the Budding Yeast Cell Cycle. BCB Mansooreh Ahmadian, John J. Tyson, Yang Cao
2018	—	`conf`	Analysis and Remedy of Negativity Problem in Hybrid Stochastic Simulation Algorithm and its Application: Extended Abstract. BCB Minghan Chen, Yang Cao
2017	J	`jnl`	Modelling Propagation of Public Opinions on Microblogging Big Data Using Sentiment Analysis and Compartmental Models. Int. J. Semantic Web Inf. Syst. Youjia Fang, Xin Chen, Zheng Song, Tianzi Wang, Yang Cao
2016	J	`jnl`	Efficient implementation of the hybrid method for stochastic simulation of biochemical systems. CoRR Shuo Wang, Yang Pu, Layne T. Watson, Yang Cao
2016	—	`conf`	Stochastic Modeling and Simulation of Reaction-Diffusion System with Hill Function Dynamics. BCB Minghan Chen, Fei Li, Shuo Wang, Yang Cao
2015	J	`jnl`	A Framework to Analyze the Performance of Load Balancing Schemes for Ensembles of Stochastic Simulations. Int. J. Parallel Program. Tae-Hyuk Ahn, Adrian Sandu, Layne T. Watson, Clifford A. Shaffer, Yang Cao, William T. Baumann
2015	—	`conf`	Two-dimensional model of bipolar PopZ polymerization in BCB Minghan Chen, Fei Li, Kartik Subramanian, John J. Tyson, Yang Cao
2014	J	`jnl`	Misinformation Propagation in the Age of Twitter. Computer Fang Jin, Wei Wang, Liang Zhao, Edward R. Dougherty, Yang Cao, Chang-Tien Lu, Naren Ramakrishnan
2013	—	`conf`	Epidemiological modeling of news and rumors on Twitter. SNAKDD Fang Jin, Edward R. Dougherty, Parang Saraf, Yang Cao, Naren Ramakrishnan
2013	—	`conf`	Multigrid discretization method for PopZ polarization in Caulobacter cell cycle. BIBM Fei Li, Yang Cao
2012	—	`conf`	Approximation of a multi-scale model based on multiple site phosphorylation. BIBM Workshops Zhen Liu, Yang Cao
2012	J	`jnl`	Effective GPU Acceleration of Large Scale, Asynchronous Simulations on Graphs. Adv. Complex Syst. Dustin Arendt, Yang Cao
2012	—	`conf`	Efficient implementation of the hybrid method for stochastic simulation of biochemical systems. BCB Shuo Wang, Yang Cao
2012	J	`jnl`	Evolutionary motifs for the Automated Discovery of Self-Organizing dimer Automata. Adv. Complex Syst. Dustin Arendt, Yang Cao
2012	J	`jnl`	Implementing modular adaptation of scientific software. J. Comput. Sci. Pilsung Kang, Naresh K. C. Selvarasu, Naren Ramakrishnan, Calvin J. Ribbens, Danesh K. Tafti, Yang Cao, Srinidhi Varadarajan
2012	—	`conf`	The effect of unhealthy β-cells in synchronized insulin secretion. BIBM Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao
2010	J	`jnl`	A modified uniformization method for the solution of the chemical master equation. Comput. Math. Appl. Jingwei Zhang, Layne T. Watson, Yang Cao
2010	C	`conf`	Hybrid Modeling and Simulation of Insulin Secretion Pathway in Pancreatic Islets. BIBE Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao
2010	Misc	`conf`	Multistate modeling and simulation for regulatory networks. WSC Zhen Liu, Umme Juka Mobassera, Clifford A. Shaffer, Layne T. Watson, Yang Cao
2010	—	`conf`	Stiffness detection and reduction in discrete stochastic simulation of biochemical systems. SpringSim Yang Pu, Layne T. Watson, Yang Cao
2009	J	`jnl`	Adaptive aggregation method for the Chemical Master Equation. Int. J. Comput. Biol. Drug Des. Jingwei Zhang, Layne T. Watson, Yang Cao
2009	—	`conf`	Modeling of Metabolic Oscillations in Mitochondria and Their Coupling in a Cell. BIOCOMP Yang Pu, Saangho Lee, Zhen Liu, David C. Samuels, Layne T. Watson, Yang Cao
2009	Misc	`conf`	Modular implementation of adaptive decisions in stochastic simulations. SAC Pilsung Kang, Yang Cao, Naren Ramakrishnan, Calvin J. Ribbens, Srinidhi Varadarajan
2009	—	`conf`	Parallel solution of the chemical master equation. SpringSim Jingwei Zhang, Masha Sosonkina, Layne T. Watson, Yang Cao
2009	—	`conf`	Radial Basis Function Collocation for the Chemical Master Equation. BIOCOMP Jingwei Zhang, Layne T. Watson, Yang Cao
2009	—	`conf`	Stochastic cell cycle modeling for budding yeast. SpringSim Tae-Hyuk Ahn, Pengyuan Wang, Layne T. Watson, Yang Cao, Clifford A. Shaffer, William T. Baumann
2008	C	`conf`	Adaptive aggregation method for the chemical master equation. BIBE Jingwei Zhang, Layne T. Watson, Yang Cao
2008	—	`conf`	Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation. BIOCOMP Jingwei Zhang, Layne T. Watson, Masha Sosonkina, Yang Cao
2008	—	`conf`	Converting macromolecular regulatory models from deterministic to stochastic formulation. SpringSim Pengyuan Wang, Ranjit Randhawa, Clifford A. Shaffer, Yang Cao, William T. Baumann
2008	A*	`conf`	Reconstructing chemical reaction networks: data mining meets system identification. KDD Yong Ju Cho, Naren Ramakrishnan, Yang Cao
2008	—	`conf`	Stochastic Simulation Algorithms for Chemical Reactions. BIOCOMP Tae-Hyuk Ahn, Yang Cao, Layne T. Watson
2006	J	`jnl`	Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems. J. Comput. Phys. Yang Cao, Linda R. Petzold
2006	J	`jnl`	Sensitivity analysis of differential-algebraic equations and partial differential equations. Comput. Chem. Eng. Linda R. Petzold, Shengtai Li, Yang Cao, Radu Serban
2005	J	`jnl`	Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems. Multiscale Model. Simul. Muruhan Rathinam, Linda R. Petzold, Yang Cao, Daniel T. Gillespie
2004	J	`jnl`	A Posteriori Error Estimation and Global Error Control for Ordinary Differential Equations by the Adjoint Method. SIAM J. Sci. Comput. Yang Cao, Linda R. Petzold
2003	J	`jnl`	A Subspace Error Estimate for Linear Systems. SIAM J. Matrix Anal. Appl. Yang Cao, Linda R. Petzold
2003	J	`jnl`	Adjoint Sensitivity Analysis for Differential-Algebraic Equations: The Adjoint DAE System and Its Numerical Solution. SIAM J. Sci. Comput. Yang Cao, Shengtai Li, Linda R. Petzold, Radu Serban