Yanay Ofran

17 papers Misc 4Journal 11Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
DistilProtBert: a distilled protein language model used to distinguish between real proteins and their randomly shuffled counterparts.
Bioinform.
Yaron Geffen, Yanay Ofran, Ron Unger
2015 J jnl
PEASE: predicting B-cell epitopes utilizing antibody sequence.
Bioinform.
Inbal Sela-Culang, Shaul Ashkenazi, Bjoern Peters, Yanay Ofran
2013 J jnl
Non-local residue-residue contacts in proteins are more conserved than local ones.
Bioinform.
Orly Noivirt-Brik, Gershon Hazan, Ron Unger, Yanay Ofran
2012 J jnl
Assessing the relationship between conservation of function and conservation of sequence using photosynthetic proteins.
Bioinform.
Shaul Ashkenazi, Rotem Snir, Yanay Ofran
2012 J jnl
Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure.
Nucleic Acids Res.
Vered Kunik, Shaul Ashkenazi, Yanay Ofran
2012 J jnl
Static network structure can be used to model the phenotypic effects of perturbations in regulatory networks.
Bioinform.
Ariel Feiglin, Adar Hacohen, Avital Sarusi, Jasmin Fisher, Ron Unger, Yanay Ofran
2012 J jnl
Structural Consensus among Antibodies Defines the Antigen Binding Site.
PLoS Comput. Biol.
Vered Kunik, Bjoern Peters, Yanay Ofran
2009 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Atul J. Butte, Maricel G. Kann
2008 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Marco Punta, Atul J. Butte, Maricel G. Kann
2008 J jnl
The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function.
PLoS Comput. Biol.
Marco Punta, Yanay Ofran
2007 J jnl
ISIS: interaction sites identified from sequence.
Bioinform.
Yanay Ofran, Burkhard Rost
2007 — conf
Prediction of DNA-binding residues from sequence.
ISMB/ECCB (Supplement of Bioinformatics)
Yanay Ofran, Venkatesh Mysore, Burkhard Rost
2007 J jnl
Protein-Protein Interaction Hotspots Carved into Sequences.
PLoS Comput. Biol.
Yanay Ofran, Burkhard Rost
2007 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Maricel G. Kann, Yanay Ofran, Marco Punta, Predrag Radivojac
2006 — conf
Create and assess protein networks through molecular characteristics of individual proteins.
ISMB (Supplement of Bioinformatics)
Yanay Ofran, Guy Yachdav, Eyal Mozes, Ta-tsen Soong, Rajesh Nair, Burkhard Rost
2006 J jnl
Epitome: database of structure-inferred antigenic epitopes.
Nucleic Acids Res.
Avner Schlessinger, Yanay Ofran, Guy Yachdav, Burkhard Rost
2006 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Maricel G. Kann, Yanay Ofran, Marco Punta, Predrag Radivojac