Yana Bromberg

27 papers A 1C 1Misc 2Journal 22
YearRankTypeTitle / Venue / Authors
2025 A conf
Better AI For Understanding Life on Earth: Predict First, Design Later.
SDM
Yana Bromberg, Amarda Shehu
2025 J jnl
Functional profiling of the sequence stockpile: a protein pair-based assessment of
Bioinform.
R. Prabakaran, Yana Bromberg
2021 J jnl
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Nucleic Acids Res.
Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost
2020 J jnl
Amino acid encoding for deep learning applications.
BMC Bioinform.
Hesham ElAbd, Yana Bromberg, Adrienne Hoarfrost, Tobias Lenz, Andre Franke, Mareike Wendorff
2019 J jnl
ISMB/ECCB 2019 Proceedings.
Bioinform.
Yana Bromberg, Nadia El-Mabrouk, Predrag Radivojac
2018 J jnl
HFSP: high speed homology-driven function annotation of proteins.
Bioinform.
Yannick Mahlich, Martin Steinegger, Burkhard Rost, Yana Bromberg
2018 J jnl
ISMB 2018 proceedings.
Bioinform.
Yana Bromberg, Predrag Radivojac
2018 J jnl
Ten simple rules for drawing scientific comics.
PLoS Comput. Biol.
Jason E. McDermott, Matthew Partridge, Yana Bromberg
2018 J jnl
fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks.
Nucleic Acids Res.
Chengsheng Zhu, Yannick Mahlich, Maximilian Miller, Yana Bromberg
2018 J jnl
fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks.
Nucleic Acids Res.
Chengsheng Zhu, Yannick Mahlich, Maximilian Miller, Yana Bromberg
2017 — ed.
2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017, Kansas City, MO, USA, November 13-16, 2017
BIBM
Xiaohua Hu, Chi-Ren Shyu, Yana Bromberg, Jean Gao, Yang Gong, Dmitry Korkin, Illhoi Yoo, Huiru Jane Zheng
2017 J jnl
ISMB/ECCB 2017 proceedings.
Bioinform.
Niko Beerenwinkel, Yana Bromberg
2017 Misc conf
Session Introduction.
PSB
Yana Bromberg, Matthew W. Hahn, Predrag Radivojac
2017 J jnl
clubber: removing the bioinformatics bottleneck in big data analyses.
J. Integr. Bioinform.
Maximilian Miller, Chengsheng Zhu, Yana Bromberg
2016 Misc conf
Computational Approaches to Study Microbes and Microbiomes.
PSB
Casey S. Greene, James A. Foster, Bruce A. Stanton, Deborah A. Hogan, Yana Bromberg
2016 J jnl
Predicted Molecular Effects of Sequence Variants Link to System Level of Disease.
PLoS Comput. Biol.
Jonas Reeb, Maximilian Hecht, Yannick Mahlich, Yana Bromberg, Burkhard Rost
2015 J jnl
Editor's Choice: SNP-SIG 2013: the state of the art of genomic variant interpretation.
Bioinform.
Yana Bromberg, Emidio Capriotti
2015 J jnl
Functional Basis of Microorganism Classification.
PLoS Comput. Biol.
Chengsheng Zhu, Tom O. Delmont, Timothy M. Vogel, Yana Bromberg
2014 J jnl
PredictProtein - an open resource for online prediction of protein structural and functional features.
Nucleic Acids Res.
Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost
2013 J jnl
Chapter 15: Disease Gene Prioritization.
PLoS Comput. Biol.
Yana Bromberg
2013 J jnl
The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.
PLoS Comput. Biol.
Jeroen de Ridder, Yana Bromberg, Magali Michaut, Venkata P. Satagopam, Manuel Corpas, Geoff MacIntyre, Theodore Alexandrov
2012 J jnl
Bioinformatics for personal genome interpretation.
Briefings Bioinform.
Emidio Capriotti, Nathan L. Nehrt, Maricel G. Kann, Yana Bromberg
2012 J jnl
SNPdbe: constructing an nsSNP functional impacts database.
Bioinform.
Christian Schaefer, Alice Meier, Burkhard Rost, Yana Bromberg
2010 J jnl
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.
Nucleic Acids Res.
Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal
2009 J jnl
Correlating protein function and stability through the analysis of single amino acid substitutions.
BMC Bioinform.
Yana Bromberg, Burkhard Rost
2008 C conf
Comprehensive
ECCB
Yana Bromberg, Burkhard Rost
2008 J jnl
SNAP predicts effect of mutations on protein function.
Bioinform.
Yana Bromberg, Guy Yachdav, Burkhard Rost