Yan Zhu

13 papers Journal 11Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Structure-Aware Heterogeneous Information Fusion Framework for Protein-Ligand Binding Affinity Prediction.
J. Chem. Inf. Model.
Yan Zhu, Chunyu Wang, Junjie Wang, Lingling Zhao, Quan Zou
2024 J jnl
Drug-Target Binding Affinity Prediction in a Continuous Latent Space Using Variational Autoencoders.
IEEE ACM Trans. Comput. Biol. Bioinform.
Lingling Zhao, Yan Zhu, Naifeng Wen, Chunyu Wang, Junjie Wang, Yongfeng Yuan
2023 J jnl
DataDTA: a multi-feature and dual-interaction aggregation framework for drug-target binding affinity prediction.
Bioinform.
Yan Zhu, Lingling Zhao, Naifeng Wen, Junjie Wang, Chunyu Wang
2023 J jnl
TIMER is a Siamese neural network-based framework for identifying both general and species-specific bacterial promoters.
Briefings Bioinform.
Yan Zhu, Fuyi Li, Xudong Guo, Xiaoyu Wang, Lachlan J. M. Coin, Geoffrey I. Webb, Jiangning Song, Cangzhi Jia
2022 J jnl
Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction.
Briefings Bioinform.
Meng Zhang, Cangzhi Jia, Fuyi Li, Chen Li, Yan Zhu, Tatsuya Akutsu, Geoffrey I. Webb, Quan Zou, Lachlan J. M. Coin, Jiangning Song
2022 J jnl
O-glycosylation site prediction for Homo sapiens by combining properties and sequence features with support vector machine.
J. Bioinform. Comput. Biol.
Yan Zhu, Shuwan Yin, Jia Zheng, Yixia Shi, Cangzhi Jia
2021 J jnl
Computational identification of eukaryotic promoters based on cascaded deep capsule neural networks.
Briefings Bioinform.
Yan Zhu, Fuyi Li, Dongxu Xiang, Tatsuya Akutsu, Jiangning Song, Cangzhi Jia
2021 — conf
SeqGO-CPA: Improving Compound-Protein Binding Affinity Prediction with Sequence Information and Gene Ontology Knowledge.
BIBM
Chunyu Wang, Yan Zhu, Naifeng Wen, Lingling Zhao, Junjie Wang
2021 J jnl
Visual exploration of large metabolic models.
Bioinform.
Michael Aichem, Tobias Czauderna, Yan Zhu, Jinxin Zhao, Matthias Klapperstück, Karsten Klein, Jian Li, Falk Schreiber
2020 J jnl
PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact.
Briefings Bioinform.
Fuyi Li, Cunshuo Fan, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Cangzhi Jia, Yan Zhu, Alexander Ian Smith, Geoffrey I. Webb, Quanzhong Liu, Leyi Wei, Jian Li, Jiangning Song
2020 J jnl
iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.
Briefings Bioinform.
Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T. Marquez-Lago, André Leier, Jerico Nico De Leon Revote, Yan Zhu, David R. Powell, Tatsuya Akutsu, Geoffrey I. Webb, Kuo-Chen Chou, Alexander Ian Smith, Roger J. Daly, Jian Li, Jiangning Song
2017 — conf
3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz.
SD&A
Björn Sommer, David G. Barnes, Sarah E. Boyd, Tom Chandler, Maxime Cordeil, Tobias Czauderna, Matthias Klapperstück, Karsten Klein, Toàn D. Nguyên, Hieu T. Nim, Kingsley Stephens, Dany Vohl, Stephen Jia Wang, Elliott Wilson, Yan Zhu, Jian Li, Jon McCormack, Kim Marriott, Falk Schreiber
2016 J jnl
Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Eng.
Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber