Yan W. Asmann

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
Corrigendum to "Identification of gene regulatory networks associated with breast cancer patient survival using an interpretable deep neural network model" [Expert Syst. Appl. 262 (2025) 125632].
Expert Syst. Appl.
Xue Wang, Vivekananda Sarangi, Daniel P. Wickland, Shaoyu Li, Duan Chen, E. Aubrey Thompson, Garrett Jenkinson, Yan W. Asmann
2025 J jnl
Identification of gene regulatory networks associated with breast cancer patient survival using an interpretable deep neural network model.
Expert Syst. Appl.
Xue Wang, Vivekananda Sarangi, Daniel P. Wickland, Shaoyu Li, Duan Chen, E. Aubrey Thompson, Garrett Jenkinson, Yan W. Asmann
2022 J jnl
Assessment and Optimization of Explainable Machine Learning Models Applied to Transcriptomic Data.
Genom. Proteom. Bioinform.
Yongbing Zhao, Jinfeng Shao, Yan W. Asmann
2020 J jnl
Somatic selection distinguishes oncogenes and tumor suppressor genes.
Bioinform.
Pramod Chandrashekar, Navid Ahmadinejad, Junwen Wang, Aleksandar Sekulic, Jan B. Egan, Yan W. Asmann, Sudhir Kumar, Carlo Maley, Li Liu
2019 J jnl
NucMap: a database of genome-wide nucleosome positioning map across species.
Nucleic Acids Res.
Yongbing Zhao, Jinyue Wang, Fang Liang, Yanxia Liu, Qi Wang, Hao Zhang, Meiye Jiang, Zhewen Zhang, Wenming Zhao, Yiming Bao, Zhang Zhang, Jiayan Wu, Yan W. Asmann, Rujiao Li, Jing-Fa Xiao
2018 J jnl
Identification of missing variants by combining multiple analytic pipelines.
BMC Bioinform.
Yingxue Ren, Joseph S. Reddy, Cyril Pottier, Vivekananda Sarangi, Shulan Tian, Jason P. Sinnwell, Shannon K. McDonnell, Joanna M. Biernacka, Minerva M. Carrasquillo, Owen A. Ross, Nilüfer Ertekin-Taner, Rosa Rademakers, Matthew Hudson, Liudmila Sergeevna Mainzer, Yan W. Asmann
2014 J jnl
MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing.
BMC Bioinform.
Krishna R. Kalari, Asha A. Nair, Jaysheel D. Bhavsar, Daniel R. O'Brien, Jaime I. Dávila, Matthew A. Bockol, Jinfu J. Nie, Xiaojia Tang, Saurabh Baheti, Jay B. Doughty, Sumit Middha, Hugues Sicotte, E. Aubrey Thompson, Yan W. Asmann, Jean-Pierre A. Kocher
2014 J jnl
PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.
Bioinform.
Chen Wang, Jared Evans, Aditya Bhagwate, Naresh Prodduturi, Vivekananda Sarangi, Mridu Middha, Hugues Sicotte, Peter T. Vedell, Steven N. Hart, Gavin R. Oliver, Jean-Pierre A. Kocher, Matthew J. Maurer, Anne J. Novak, Susan L. Slager, James R. Cerhan, Yan W. Asmann
2014 J jnl
RVboost: RNA-seq variants prioritization using a boosting method.
Bioinform.
Chen Wang, Jaime I. Dávila, Saurabh Baheti, Aditya Bhagwate, Xue Wang, Jean-Pierre A. Kocher, Susan L. Slager, Andrew L. Feldman, Anne J. Novak, James R. Cerhan, E. Aubrey Thompson, Yan W. Asmann
2012 J jnl
SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.
Bioinform.
Zhifu Sun, Saurabh Baheti, Sumit Middha, Rahul Kanwar, Yuji Zhang, Xing Li, Andreas S. Beutler, Eric W. Klee, Yan W. Asmann, E. Aubrey Thompson, Jean-Pierre A. Kocher
2012 J jnl
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.
Bioinform.
Yan W. Asmann, Sumit Middha, Asif Hossain, Saurabh Baheti, Ying Li, High-Seng Chai, Zhifu Sun, Patrick H. Duffy, Ahmed A. Hadad, Asha A. Nair, Xiaoyu Liu, Yuji Zhang, Eric W. Klee, Krishna R. Kalari, Jean-Pierre A. Kocher
2009 J jnl
GLOSSI: a method to assess the association of genetic loci-sets with complex diseases.
BMC Bioinform.
High-Seng Chai, Hugues Sicotte, Kent R. Bailey, Stephen T. Turner, Yan W. Asmann, Jean-Pierre A. Kocher