Yan Cui

29 papers B 2Journal 21Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
Digital pathways connecting social and biological factors to health outcomes and equity.
npj Digit. Medicine
Yan Cui
2019 B conf
Feature Ranking using Robust Fuzzy Score Function for Gene Expression Data.
FUZZ-IEEE
Vikas Singh, Teena Sharma, Nishchal K. Verma, Yan Cui
2019 J jnl
Transfer Learning for Molecular Cancer Classification Using Deep Neural Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Rahul Kumar Sevakula, Vikas Singh, Nishchal K. Verma, Chandan Kumar, Yan Cui
2018 B conf
Optimal Feature Selection using Fuzzy Combination of Feature Subset for Transcriptome Data.
FUZZ-IEEE
Vikas Singh, Harsh Vardhan, Nishchal K. Verma, Yan Cui
2017 J jnl
Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017.
BMC Bioinform.
Eric C. Rouchka, Julia H. Chariker, David Tieri, Juw Won Park, Shreedharkumar D. Rajurkar, Vikas Singh, Nishchal K. Verma, Yan Cui, Mark L. Farman, Bradford Condon, Neil Moore, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Daniel R. Harris, Patrick Calie, Eun Kyong Shin, Robert L. Davis, Arash Shaban-Nejad, Joshua M. Mitchell, Robert M. Flight, Qing Jun Wang, Richard M. Higashi, Teresa W.-M. Fan, Andrew N. Lane, Hunter N. B. Moseley, Liangqun Lu, Bernie J. Daigle, Xi Chen, Andrey Smelter, Li Chen, Bailey K. Phan, Nathaniel J. Serpico, Ethan G. Toney, Caroline E. Melton, Jennifer R. Mandel, Bernie J. Daigle Jr., Hao Chen, Kazi I. Zaman, Ramin Homayouni, Patrick J. Trainor, Samantha M. Carlisle, Andrew P. DeFilippis, Shesh N. Rai
2017 J jnl
Systematic Prediction of the Impacts of Mutations in MicroRNA Seed Sequences.
J. Integr. Bioinform.
Anindya Bhattacharya, Yan Cui
2016 J jnl
Assessing the quality of biclusters using fuzzy biclustering index.
Int. J. Data Min. Bioinform.
Nishchal K. Verma, Esha Dutta, Yan Cui
2016 — conf
Layerwise feature selection in Stacked Sparse Auto-Encoder for tumor type prediction.
BIBM
Vikas Singh, Nikhil Baranwal, Rahul Kumar Sevakula, Nishchal K. Verma, Yan Cui
2016 J jnl
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016.
BMC Bioinform.
Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffrey Rubnitz, Jatinder Lamba, Bernie J. Daigle Jr., Deborah Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Sen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas J. Jackson, John F. Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles A. Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L. Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M. Scotty Depriest, James N. MacLeod, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian Valentine, Naga Satya Venkateswara Ra Nagisetty, Rony Jose, Robert W. Rooney, David Hains
2016 J jnl
SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions.
Nucleic Acids Res.
Anindya Bhattacharya, Yan Cui
2015 — conf
Hausdorff distance and global silhouette index as novel measures for estimating quality of biclusters.
BIBM
Nishchal K. Verma, Esha Dutta, Yan Cui
2015 J jnl
miR2GO: comparative functional analysis for microRNAs.
Bioinform.
Anindya Bhattacharya, Yan Cui
2014 J jnl
PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways.
Nucleic Acids Res.
Anindya Bhattacharya, Jesse D. Ziebarth, Yan Cui
2013 J jnl
Bayesian Network Webserver: a comprehensive tool for biological network modeling.
Bioinform.
Jesse D. Ziebarth, Anindya Bhattacharya, Yan Cui
2013 J jnl
CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization.
Nucleic Acids Res.
Jesse D. Ziebarth, Anindya Bhattacharya, Yan Cui
2013 J jnl
SomamiR: a database for somatic mutations impacting microRNA function in cancer.
Nucleic Acids Res.
Anindya Bhattacharya, Jesse D. Ziebarth, Yan Cui
2012 J jnl
PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits.
Nucleic Acids Res.
Jesse D. Ziebarth, Anindya Bhattacharya, Anlong Chen, Yan Cui
2010 J jnl
Linking genotype to phenotype with Bayesian network modeling of
BMC Bioinform.
Jesse D. Ziebarth, Bao Li, Isao Miyairi, Yan Cui
2009 J jnl
Fuzzy rule based unsupervised approach for gene saliency.
BMC Bioinform.
Nishchal K. Verma, Pooja Agrawal, Yan Cui
2009 — conf
Fuzzy rule based unsupervised approach for salient gene extraction.
AIPR
Nishchal K. Verma, Payal Gupta, Pooja Agrawal, Yan Cui
2009 — conf
MRI brain image segmentation for spotting tumors using improved mountain clustering approach.
AIPR
Nishchal K. Verma, Payal Gupta, Pooja Agrawal, Yan Cui
2009 — conf
Medical Image Segmentation Using Improved Mountain Clustering Approach.
ITNG
Nishchal K. Verma, Payal Gupta, Pooja Agrawal, Madasu Hanmandlu, Shantaram Vasikarla, Yan Cui
2008 J jnl
CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators.
Nucleic Acids Res.
Lei Bao, Mi Zhou, Yan Cui
2007 J jnl
PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits.
Nucleic Acids Res.
Lei Bao, Mi Zhou, Ligang Wu, Lu Lu, Dan Goldowitz, Robert W. Williams, Yan Cui
2005 J jnl
Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information.
Bioinform.
Lei Bao, Yan Cui
2005 J jnl
nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms.
Nucleic Acids Res.
Lei Bao, Mi Zhou, Yan Cui
2004 J jnl
GeneInfoViz: Constructing and visualizing gene relation networks.
Silico Biol.
Mi Zhou, Yan Cui
2004 — conf
Ranking Gene Regulatory Network Models with Microarray Data and Bayesian Network.
CASDMKM
Hongqiang Li, Mi Zhou, Yan Cui
1998 J jnl
Torsional Relaxation for Biopolymers.
J. Comput. Biol.
Wing Hung Wong, Yan Cui, Run Sheng Chen