Yajie Meng - RankMe

35 papers A* 2Journal 31Unranked 2

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A deep adversarial network model for multi-task analysis of single-cell omics data. Briefings Bioinform. Junlin Xu, Cheng Guo, Yajie Meng, Shuting Jin, Changcheng Lu, Zilong Zhang, Feifei Cui, Xiangzheng Fu, Quan Zou, Tian Tian, Xiangxiang Zeng
2026	J	`jnl`	CNNCaps-DBP: Leveraging protein language models with attention-augmented convolution for DNA-binding protein prediction. Neural Networks Ziyuan Yan, Aoyun Geng, Yazi Li, Jiajing Wang, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Zilong Zhang, Feifei Cui
2026	J	`jnl`	DeepNhKcr: Explainable Deep Learning Framework for the Prediction of Crotonylation Sites of Non-Histone Lysine in Plants Based on Pre-Trained Protein Language Model. IEEE Trans. Comput. Biol. Bioinform. Jinwei Wang, Zhenjie Luo, Aoyun Geng, Junlin Xu, Yajie Meng, Shankai Yan, Leyi Wei, Zilong Zhang, Qingchen Zhang, Quan Zou, Feifei Cui
2026	A*	`conf`	EccoMamba: Enhanced Cross-hierarchical Continuity Orthogonal Mamba for Medical Image Segmentation. AAAI Junlin Xu, Jincan Li, Feifei Cui, Zhuang Zhang, Jialiang Yang, Shuting Jin, Qiangguo Jin, Yajie Meng
2026	A*	`conf`	FuseMine: Robust Multi-Modal Compound-Protein Interaction Prediction via Differential Attention Feature Mining. AAAI Junlin Xu, Zhuang Zhang, Zhenghang Gong, Jincan Li, Pan Zeng, Zilong Zhang, Xiong Li, Shuting Jin, Haowen Chen, Yajie Meng
2026	J	`jnl`	FusionMVSA: Multi-View Fusion Strategy With Self-Attention for Enhancing Drug Recommendation. IEEE J. Biomed. Health Informatics Yajie Meng, Zhuang Zhang, Xudong Shang, Xianfang Tang, Jincan Li, Zilong Zhang, Feifei Cui, Shuting Jin, Junlin Xu, Peng Wang
2026	J	`jnl`	MFDL-DDI: An effective deep learning-based framework for predicting drug-drug interactions through multimodal information fusion. Pattern Recognit. Yan Xia, Yazi Li, Shuting Jin, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Xin Gao, Feifei Cui
2026	J	`jnl`	Protein Solubility Prediction Using Fused Graph Convolutional Networks and Improved Attention Networks with AlphaFold3-Derived Features. J. Chem. Inf. Model. Guanjie Song, Zhenjie Luo, Aoyun Geng, Junlin Xu, Yajie Meng, Feifei Cui, Leyi Wei, Quan Zou, Zilong Zhang
2025	J	`jnl`	AVP-HNCL: Innovative Contrastive Learning with a Queue-Based Negative Sampling Strategy for Dual-Phase Antiviral Peptide Prediction. J. Chem. Inf. Model. Yuanhao Li, Aoyun Geng, Zheyu Zhou, Feifei Cui, Junlin Xu, Yajie Meng, Leyi Wei, Quan Zou, Qingchen Zhang, Zilong Zhang
2025	J	`jnl`	AcidProNet: Acidophilic Protein Classification via DCGAN-GP-Based Data Augmentation and Parameter-Shared Mixture-of-Experts Transformer. J. Chem. Inf. Model. Jiaxing Song, Aoyun Geng, Qianmao Wen, Junlin Xu, Yajie Meng, Feifei Cui, Quan Zou, Leyi Wei, Zilong Zhang
2025	J	`jnl`	Adaptive debiasing learning for drug repositioning. J. Biomed. Informatics Yajie Meng, Yi Wang, Xinrong Hu, Changcheng Lu, Xianfang Tang, Feifei Cui, Pan Zeng, Yuhua Yao, Jialiang Yang, Junlin Xu
2025	J	`jnl`	Automatic collaborative learning for drug repositioning. Eng. Appl. Artif. Intell. Yi Wang, Yajie Meng, Chang Zhou, Xianfang Tang, Pan Zeng, Chu Pan, Qiang Zhu, Bengong Zhang, Junlin Xu
2025	J	`jnl`	CDPMF-DDA: contrastive deep probabilistic matrix factorization for drug-disease association prediction. BMC Bioinform. Xianfang Tang, Yawen Hou, Yajie Meng, Zhaojing Wang, Changcheng Lu, Juan Lv, Xinrong Hu, Junlin Xu, Jialiang Yang
2025	J	`jnl`	DeepMaT: Prediction of Target Peptide Classification and Cleavage Site by Combining Mamba2 and Multiple Attention Mechanisms. J. Chem. Inf. Model. Qianmao Wen, Aoyun Geng, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Quan Zou, Feifei Cui
2025	J	`jnl`	Enhanced drug recommendation model with graph contrastive based on singular value decomposition. Eng. Appl. Artif. Intell. Pan Zeng, Ling You, Bofei Zhang, Yajie Meng, Xianfang Tang, Zilong Zhang, Feifei Cui, Jing Jiang, Junlin Xu
2025	J	`jnl`	Enhancing Drug Repositioning Through Local Interactive Learning With Bilinear Attention Networks. IEEE J. Biomed. Health Informatics Xianfang Tang, Chang Zhou, Changcheng Lu, Yajie Meng, Junlin Xu, Xinrong Hu, Geng Tian, Jialiang Yang
2025	J	`jnl`	ML-PLA: Enhancing Protein-Ligand Binding Affinity Prediction with Microenvironment and Long-Range Interaction-Aware Graph Neural Networks. J. Chem. Inf. Model. Yajie Meng, Zhuang Zhang, Jincan Li, Xianfang Tang, Changcheng Lu, Zilong Zhang, Feifei Cui, Pan Zeng, Bo Li, Junlin Xu
2025	J	`jnl`	PLM-IL4: Enhancing IL-4-inducing peptide prediction with protein language model. Comput. Biol. Chem. Ruiqi Liu, Shankai Yan, Zilong Zhang, Junlin Xu, Yajie Meng, Qingchen Zhang, Leyi Wei, Quan Zou, Feifei Cui
2025	J	`jnl`	Predicting drug-target interactions based on multivariate information fusion and graph contrast learning. J. Biomed. Informatics Siying Yang, Ping-an He, Pan Zeng, Yajie Meng, Zilong Zhang, Feifei Cui, Yuhua Yao, Jialiang Yang, Junlin Xu
2025	J	`jnl`	ST-GCP: a graph convolutional network model with contrastive consistency and permutation for spatial transcriptomics. Briefings Bioinform. Yajie Meng, Yongkang Wang, Cheng Guo, Xianfang Tang, Zilong Zhang, Feifei Cui, Xiangzheng Fu, Quan Zou, Xu Lu, Junlin Xu
2025	J	`jnl`	SWMA-UNet: Multi-Path Attention Network for Improved Medical Image Segmentation. IEEE J. Biomed. Health Informatics Xianfang Tang, Jincan Li, Qianrui Liu, Chang Zhou, Pan Zeng, Yajie Meng, Junlin Xu, Geng Tian, Jialiang Yang
2025	—	`conf`	TransFVAE: A Transformer-Based Flow Variational Autoencoder Model for Molecular Graph Generation. BIBM Junlin Ding, Shuting Jin, Yajie Meng, Qiangguo Jin, Junlin Xu
2025	J	`jnl`	m5U-HybridNet: Integrating an RNA Foundation Model with CNN Features for Accurate Prediction of 5-Methyluridine Modification Sites. J. Chem. Inf. Model. Xinyu Li, Zhenjie Luo, Jingwei Lv, Chao Yang, Shankai Yan, Junlin Xu, Yajie Meng, Leyi Wei, Zilong Zhang, Quan Zou, Feifei Cui
2024	J	`jnl`	Drug repositioning based on tripartite cross-network embedding and graph convolutional network. Expert Syst. Appl. Pan Zeng, Bofei Zhang, Aohang Liu, Yajie Meng, Xianfang Tang, Jialiang Yang, Junlin Xu
2024	J	`jnl`	Drug repositioning based on weighted local information augmented graph neural network. Briefings Bioinform. Yajie Meng, Yi Wang, Junlin Xu, Changcheng Lu, Xianfang Tang, Tao Peng, Ben-gong Zhang, Geng Tian, Jialiang Yang
2024	J	`jnl`	Joint extraction of biomedical overlapping triples through feature partition encoding. Expert Syst. Appl. Qiang Zhu, Cheng Hong, Yajie Meng, Huali Yang, Weizhong Zhao
2023	—	`conf`	Medical Image Segmentation Using Dual Branch Networks with Embedded Attention Mechanism. BIBM Shuaishuai Yang, Min Jin, Lian Wang, Changcheng Lu, Yajie Meng, Die Yan, Zhijian Huang, Junlin Xu
2022	J	`jnl`	A weighted bilinear neural collaborative filtering approach for drug repositioning. Briefings Bioinform. Yajie Meng, Changcheng Lu, Min Jin, Junlin Xu, Xiangxiang Zeng, Jialiang Yang
2022	J	`jnl`	Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data. Comput. Biol. Medicine Junlin Xu, Lingyu Cui, Jujuan Zhuang, Yajie Meng, Pingping Bing, Binsheng He, Geng Tian, Choi Kwok Pui, Taoyang Wu, Bing Wang, Jialiang Yang
2021	J	`jnl`	A Novel Hybrid Feature Selection and Ensemble Learning Framework for Unbalanced Cancer Data Diagnosis With Transcriptome and Functional Proteomic. IEEE Access Xianfang Tang, Lijun Cai, Yajie Meng, Changlong Gu, Jialiang Yang, Jiasheng Yang
2021	J	`jnl`	Adsorption Behaviors of Typical Proteins on BP, GR, and C2N Surfaces. J. Chem. Inf. Model. Ruirui Liu, Hong Lin Zhai, Yajie Meng, Min Zhu, Tao Wen, Nengzhi Jin
2021	J	`jnl`	Drug repositioning based on similarity constrained probabilistic matrix factorization: COVID-19 as a case study. Appl. Soft Comput. Yajie Meng, Min Jin, Xianfang Tang, Junlin Xu
2021	J	`jnl`	Drug repositioning based on the heterogeneous information fusion graph convolutional network. Briefings Bioinform. Lijun Cai, Changcheng Lu, Junlin Xu, Yajie Meng, Peng Wang, Xiangzheng Fu, Xiangxiang Zeng, Yansen Su
2020	J	`jnl`	Degree-Based Similarity Indexes for Identifying Potential miRNA-Disease Associations. IEEE Access Yajie Meng, Min Jin, Xianfang Tang, Junlin Xu
2020	J	`jnl`	LRMCMDA: Predicting miRNA-Disease Association by Integrating Low-Rank Matrix Completion With miRNA and Disease Similarity Information. IEEE Access Junlin Xu, Wen Zhu, Lijun Cai, Bo Liao, Yajie Meng, Ju Xiang, Dawei Yuan, Geng Tian, Jialiang Yang