Xun Wang

51 papers A* 1A 1Misc 1Journal 37Unranked 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
29-Billion Atoms Molecular Dynamics Simulation With Ab Initio Accuracy on 35 Million Cores of New Sunway Supercomputer.
IEEE Trans. Computers
Xun Wang, Xiangyu Meng, Zhuoqiang Guo, Mingzhen Li, Lijun Liu, Mingfan Li, Qian Xiao, Tong Zhao, Ninghui Sun, Guangming Tan, Weile Jia
2025 J jnl
An interpretable DeePMD-kit performance model for emerging supercomputers.
CCF Trans. High Perform. Comput.
Xiangyu Meng, Xun Wang, Mingzhen Li, Guangming Tan, Weile Jia
2025 — conf
GASNet: Progressive Resolution-Aware Supervision and Gabor Guidance for Accurate Liver Vessel Segmentation.
BIBM
Qing Yang, Nuo Xu, Gang Wang, Xiangyu Meng, Huanhuan Dai, Hanyu Wang, Wenqian Yu, Xun Wang
2025 J jnl
GTE-PPIS: a protein-protein interaction site predictor based on graph transformer and equivariant graph neural network.
Briefings Bioinform.
Xun Wang, Tongyu Han, Runqiu Feng, Zhijun Xia, Hanyu Wang, Wenqian Yu, Huanhuan Dai, Haonan Song, Tao Song
2025 J jnl
Gene-MOE: A Sparsely Gated Cancer Diagnosis and Prognosis Framework Exploiting Pan-Cancer Genomic Information.
IEEE Trans. Comput. Biol. Bioinform.
Xiangyu Meng, Xue Li, Qing Yang, Huanhuan Dai, Lian Qiao, Hongzhen Ding, Long Hao, Xun Wang
2025 J jnl
Inference and training acceleration of deep learning partial differential equation solver.
J. Supercomput.
Xun Wang, Xianxi Zhu, Xiangyu Meng, Zeyang Zhu, Siyu Zhang, Tao Song
2025 J jnl
scSwinTNet: A Cell Type Annotation Method for Large-Scale Single-Cell RNA-Seq Data Based on Shifted Window Attention.
IEEE J. Biomed. Health Informatics
Huanhuan Dai, Xiangyu Meng, Zhiyi Pan, Qing Yang, Haonan Song, Yuan Gao, Xun Wang
2024 — conf
AEG-PPIS: A Dual-Branch Protein-protein Interaction Site Predictor Based on Augmented Graph Attention Network and Equivariant Graph Neural Network.
BIBM
Huanhuan Dai, Haonan Song, Tongyu Han, Qing Yang, Xiangyu Meng, Xun Wang
2024 — conf
DCUI-MGraphDTA: Enabling Efficient Inference of a Drug-Target Binding Affinity Prediction Model on DCUs.
BIBM
Tao Song, Siyu Zhang, Xiangyu Meng, Zeyang Zhu, Xianxi Zhu, Xun Wang
2024 A conf
Exploring Efficient Partial Differential Equation Solution Using Speed Galerkin Transformer.
SC
Xun Wang, Zeyang Zhu, Xiangyu Meng, Tao Song
2024 J jnl
Interface-aware molecular generative framework for protein-protein interaction modulators.
J. Cheminformatics
Jianmin Wang, Jiashun Mao, Chunyan Li, Hongxin Xiang, Xun Wang, Shuang Wang, Zixu Wang, Yangyang Chen, Yuquan Li, Kyoung Tai No, Tao Song, Xiangxiang Zeng
2024 — conf
KGM4DTI: A Depression Knowledge Graph-Driven Multi-semantic Multi-view Computational Framework for Drug-Target Interaction Prediction.
BIBM
Xu Tian, Peifu Han, Xue Li, Hongzhen Ding, Wei He, Fengrui Jing, Shuang Wang, Xun Wang, Tao Song
2024 J jnl
TBCA: Prediction of Transcription Factor Binding Sites Using a Deep Neural Network With Lightweight Attention Mechanism.
IEEE J. Biomed. Health Informatics
Xun Wang, Lian Qiao, Peng Qu, Qing Yang
2024 — conf
Transformer-Based Gene Expression Levels Prediction Using Multimodal Information.
BIBM
Tao Song, Zhiyi Pan, Haonan Song, Yuan Gao, Huanhuan Dai, Xun Wang
2023 J jnl
Accelerating k-Shape Time Series Clustering Algorithm Using GPU.
IEEE Trans. Parallel Distributed Syst.
Xun Wang, Ruibao Song, Junmin Xiao, Tong Li, Xueqi Li
2023 J jnl
DephosNet: A Novel Transfer Learning Approach for Dephosphorylation Site Prediction.
Comput.
Qing Yang, Xun Wang, Pan Zheng
2023 J jnl
Gene-MOE: A Sparsely-gated Framework for Pan-Cancer Genomic Analysis.
CoRR
Xiangyu Meng, Tao Song, Qing Yang, Huanhuan Dai, Lian Qiao, Hongzhen Ding, Long Hao, Xun Wang
2023 — conf
MulAxialGO: Multi-Modal Feature-Enhanced Deep Learning Model for Protein Function Prediction.
BIBM
Xun Wang, Peng Qu, Xiangyu Meng, Qing Yang, Lian Qiao, Chaogang Zhang, Xianjin Xie
2023 J jnl
QuantumTox: Utilizing quantum chemistry with ensemble learning for molecular toxicity prediction.
Comput. Biol. Medicine
Xun Wang, Lulu Wang, Shuang Wang, Yongqi Ren, Wenqi Chen, Xue Li, Peifu Han, Tao Song
2023 J jnl
TransFusionNet: Semantic and Spatial Features Fusion Framework for Liver Tumor and Vessel Segmentation Under JetsonTX2.
IEEE J. Biomed. Health Informatics
Xun Wang, Xudong Zhang, Gan Wang, Ying Zhang, Xin Shi, Huanhuan Dai, Min Liu, Zixuan Wang, Xiangyu Meng
2022 J jnl
AMDE: a novel attention-mechanism-based multidimensional feature encoder for drug-drug interaction prediction.
Briefings Bioinform.
Shanchen Pang, Ying Zhang, Tao Song, Xudong Zhang, Xun Wang, Alfonso Rodríguez-Patón
2022 J jnl
Automatic Repair Method for Null Pointer Dereferences Guided by Program Dependency Graph.
Symmetry
Yukun Dong, Yuxue Sun, Xun Wang
2022 — conf
Crescent: A GPU-based Targeted Nanopore Sequence Selector.
BIBM
Tong Li, Xueqi Li, Yewen Li, Ruibao Song, Xun Wang
2022 A* conf
MetaZip: a high-throughput and efficient accelerator for DEFLATE.
DAC
Ruihao Gao, Xueqi Li, Yewen Li, Xun Wang, Guangming Tan
2022 J jnl
Molormer: a lightweight self-attention-based method focused on spatial structure of molecular graph for drug-drug interactions prediction.
Briefings Bioinform.
Xudong Zhang, Gan Wang, Xiangyu Meng, Shuang Wang, Ying Zhang, Alfonso Rodríguez-Patón, Jianmin Wang, Xun Wang
2021 J jnl
A Computationally Virtual Histological Staining Method to Ovarian Cancer Tissue by Deep Generative Adversarial Networks.
Comput. Math. Methods Medicine
Xiangyu Meng, Xin Li, Xun Wang
2021 J jnl
An improved YOLOv3 model for detecting location information of ovarian cancer from CT images.
Intell. Data Anal.
Xun Wang, Hanlin Li, Lisheng Wang, Yongzhi Yu, Hao Zhou, Lei Wang, Tao Song
2021 J jnl
DEMLP: DeepWalk Embedding in MLP for miRNA-Disease Association Prediction.
J. Sensors
Xun Wang, Fuyu Wang, Xinzeng Wang, Sibo Qiao, Yu Zhuang
2021 J jnl
Exploiting full Resolution Feature Context for Liver Tumor and Vessel Segmentation via Fusion Encoder: Application to Liver Tumor and Vessel 3D reconstruction.
CoRR
Xiangyu Meng, Xudong Zhang, Gan Wang, Ying Zhang, Xin Shi, Huanhuan Dai, Zixuan Wang, Xun Wang
2021 — conf
Repositioning Traditional Chinese Medicine to PI3K Pathway Proteins Based on Deep Learning Method.
BIBM
Yue Zhong, Xun Wang, Qingyu Tian, Dayan Liu, Ying Zhang, Huanhuan Dai, Gan Wang, Xudong Zhang
2021 — conf
The binding affinity prediction of PI3K / Akt / mTOR signaling pathway proteins with drugs based on deep learning method.
BIBM
Dayan Liu, Xun Wang, Zhenzhen Du, Jiali Liu, Yue Zhong, Qingyu Tian
2020 J jnl
A Deep Model for Lung Cancer Type Identification by Densely Connected Convolutional Networks and Adaptive Boosting.
IEEE Access
Shanchen Pang, Yaqin Zhang, Mao Ding, Xun Wang, Xianjin Xie
2020 J jnl
Anthropometric Landmarks Extraction and Dimensions Measurement Based on ResNet.
Symmetry
Xun Wang, Baohua Liu, Yukun Dong, Shanchen Pang, Xixi Tao
2020 J jnl
Automatic Detection of Cardiac Chambers Using an Attention-based YOLOv4 Framework from Four-chamber View of Fetal Echocardiography.
CoRR
Sibo Qiao, Shanchen Pang, Gang Luo, Silin Pan, Xun Wang, Min Wang, Xue Zhai, Taotao Chen
2020 J jnl
VGG16-T: A Novel Deep Convolutional Neural Network with Boosting to Identify Pathological Type of Lung Cancer in Early Stage by CT Images.
Int. J. Comput. Intell. Syst.
Shanchen Pang, Fan Meng, Xun Wang, Jianmin Wang, Tao Song, Xingguang Wang, Xiaochun Cheng
2019 J jnl
An EDA-GA Hybrid Algorithm for Multi-Objective Task Scheduling in Cloud Computing.
IEEE Access
Shanchen Pang, Wenhao Li, Hua He, Zhiguang Shan, Xun Wang
2019 J jnl
Double Layers Self-Organized Spiking Neural P Systems With Anti-Spikes for Fingerprint Recognition.
IEEE Access
Tongmao Ma, Shaohua Hao, Xun Wang, Alfonso Rodríguez-Patón, Shudong Wang, Tao Song
2019 J jnl
Transmission Control of MPTCP Incast Based on Buffer Balance Factor Allocation in Data Center Networks.
IEEE Access
Shanchen Pang, Jiamin Yao, Xun Wang, Tong Ding, Li Zhang
2019 J jnl
U-Next: A Novel Convolution Neural Network With an Aggregation U-Net Architecture for Gallstone Segmentation in CT Images.
IEEE Access
Tao Song, Fan Meng, Alfonso Rodríguez-Patón, Pibao Li, Pan Zheng, Xun Wang
2018 J jnl
A computational approach for nuclear export signals identification using spiking neural P systems.
Neural Comput. Appl.
Zhihua Chen, Pan Zhang, Xun Wang, Xiaolong Shi, Tingfang Wu, Pan Zheng
2018 J jnl
A skin membrane-driven membrane algorithm for many-objective optimization.
Neural Comput. Appl.
Zhangxiao Li, Lei Zhang, Yansen Su, Jun Li, Xun Wang
2018 — conf
LncRNA-disease association prediction based on neighborhood information aggregation in neural network.
BIBM
Hongjie Chen, Xun Wang, Xuan Zhang, Xiangxiang Zeng, Tao Song, Alfonso Rodríguez-Patón
2016 — conf
A Hybrid "Fast-Slow" Convergent Framework for Genetic Algorithm Inspired by Membrane Computing.
BIC-TA (1)
Zhongwei Li, Shengyu Xia, Yun Jiang, Beibei Sun, Yuezhen Xin, Xun Wang
2016 J jnl
Design of logic gates using spiking neural P systems with homogeneous neurons and astrocytes-like control.
Inf. Sci.
Tao Song, Pan Zheng, M. L. Dennis Wong, Xun Wang
2016 J jnl
NES-REBS: A novel nuclear export signal prediction method using regular expressions and biochemical properties.
J. Bioinform. Comput. Biol.
Tingfang Wu, Xun Wang, Zheng Zhang, Faming Gong, Tao Song, Zhihua Chen, Pan Zhang, Yang Zhao
2015 J jnl
Homogenous Spiking Neural P Systems with Inhibitory Synapses.
Neural Process. Lett.
Tao Song, Xun Wang
2014 J jnl
Finding Motifs in DNA Sequences Using Low-Dispersion Sequences.
J. Comput. Biol.
Xun Wang, Ying Miao, Minquan Cheng
2014 J jnl
Homogenous spiking neural P systems with anti-spikes.
Neural Comput. Appl.
Tao Song, Xun Wang, Zhujin Zhang, Zhihua Chen
2013 J jnl
Time-Free Solution to Hamilton Path Problems Using P Systems with
J. Appl. Math.
Tao Song, Xun Wang, Hongjiang Zheng
2010 J jnl
DNA Computing.
Int. J. Nanotechnol. Mol. Comput.
Tao Song, Xun Wang, Shudong Wang, Yun Jiang
2008 Misc conf
The design of reversible gate and reversible sequential circuit based on DNA computing.
ISKE
Tao Song, Shudong Wang, Xun Wang