Xun Gu

23 papers Misc 4Journal 16Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
Identification of cancer mini-drivers by deciphering selective landscape in the cancer genome.
Briefings Bioinform.
Xunuo Zhu, Wenyi Zhao, Siqi Wang, Jingwen Yang, Jingqi Zhou, Binbin Zhou, Ji Cao, Bo Yang, Zhan Zhou, Xun Gu
2023 J jnl
MATTE: a pipeline of transcriptome module alignment for anti-noise phenotype-gene-related analysis.
Briefings Bioinform.
Guoxing Cai, Wenyi Zhao, Zhan Zhou, Xun Gu
2023 J jnl
TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database.
Genom. Proteom. Bioinform.
Jingcheng Wu, Wenfan Chen, Yuxuan Zhou, Ying Chi, Xian-Sheng Hua, Jian Wu, Xun Gu, Shuqing Chen, Zhan Zhou
2022 J jnl
MODIG: integrating multi-omics and multi-dimensional gene network for cancer driver gene identification based on graph attention network model.
Bioinform.
Wenyi Zhao, Xun Gu, Shuqing Chen, Jian Wu, Zhan Zhou
2021 J jnl
CanDriS: posterior profiling of cancer-driving sites based on two-component evolutionary model.
Briefings Bioinform.
Wenyi Zhao, Jingwen Yang, Jingcheng Wu, Guoxing Cai, Yao Zhang, Jeffrey Haltom, Weijia Su, Michael J. Dong, Shuqing Chen, Jian Wu, Zhan Zhou, Xun Gu
2019 J jnl
Estimating the strength of expression conservation from high throughput RNA-seq data.
Bioinform.
Xun Gu, Hang Ruan, Jingwen Yang
2018 J jnl
TSNAdb: A Database for Tumor-specific Neoantigens from Immunogenomics Data Analysis.
Genom. Proteom. Bioinform.
Jingcheng Wu, Wenyi Zhao, Binbin Zhou, Zhixi Su, Xun Gu, Zhan Zhou, Shuqing Chen
2017 J jnl
Paralog-divergent Features May Help Reduce Off-target Effects of Drugs: Hints from Glucagon Subfamily Analysis.
Genom. Proteom. Bioinform.
Zhining Sa, Jingqi Zhou, Yangyun Zou, Zhixi Su, Xun Gu
2016 J jnl
Statistical detection of differentially expressed genes based on RNA-seq: from biological to phylogenetic replicates.
Briefings Bioinform.
Xun Gu
2016 J jnl
Understanding tissue expression evolution: from expression phylogeny to phylogenetic network.
Briefings Bioinform.
Xun Gu
2005 Misc conf
Gene Network: Model, Dynamics and Simulation.
COCOON
Shiquan Wu, Xun Gu
2005 J jnl
GeneContent: software for whole-genome phylogenetic analysis.
Bioinform.
Xun Gu, Wei Huang, Dongping Xu, Hongmei Zhang
2003 Misc conf
Algorithms for Multiple Genome Rearrangement by Signed Reversals.
Pacific Symposium on Biocomputing
Shiquan Wu, Xun Gu
2002 J jnl
DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.
Bioinform.
Xun Gu, Kent Vander Velden
2002 — conf
Evolutionary Analysis for Developmental Profiles of Gene Family Expression in Central Nervous System.
JCIS
Yufeng Wang, Xun Gu
2002 J jnl
Evolutionary analysis of functional divergence in TGF- signaling pathway.
Inf. Sci.
Jianying Gu, Xun Gu
2002 J jnl
Evolutionary and expression profiles of gene families crucial for central nervous system development.
Inf. Sci.
Yufeng Wang, Xun Gu
2002 — conf
Expression Pattern of Yeast Sporulation: A Case Study for Regulatory Changes after Yeast Genome Duplication.
JCIS
Wei Huang, Dan Nettleton, Xun Gu
2002 J jnl
Expression pattern of yeast sporulation: a case study for regulatory changes after yeast genome duplication.
Inf. Sci.
Wei Huang, Dan Nettleton, Xun Gu
2002 — conf
Functional Divergence in TGF-b Signaling Pathway.
JCIS
Jianying Gu, Xun Gu
2002 Misc conf
Multiple Genome Rearrangement by Reversals.
Pacific Symposium on Biocomputing
Shiquan Wu, Xun Gu
2001 Misc conf
A Greedy Algorithm for Optimal Recombination.
COCOON
Shiquan Wu, Xun Gu
2001 J jnl
Mathematical Modeling for Functional Divergence after Gene Duplication.
J. Comput. Biol.
Xun Gu