Xuemei Pu

24 papers Journal 24
YearRankTypeTitle / Venue / Authors
2026 J jnl
Integrating deep generative model with active learning for predicting immunotherapy responses in gastric cancer.
Comput. Methods Programs Biomed.
Hao Lan, Jinzhou Wang, Jinyi Zhao, Menglong Li, Xuemei Pu, Yanzhi Guo
2025 J jnl
TRIM21-Driven Degradation of BRD4: Development of Heterobifunctional Degraders and Investigation of Recruitment and Selectivity Mechanisms.
J. Chem. Inf. Model.
Liyun Zhang, Qingyang Wang, Xiaomei Li, Xuemin Cheng, Longying Cai, Anping Guo, Lanjun Zhang, Hong Hu, Mei Wu, Xianyang Li, Huilin Li, Xiaoyun Meng, Yaping Qiu, Guiping Tu, Lifang Zhang, Xiaofei Dong, Yu Liang, Yushuang Wang, Jin Li, Dengfeng Dou, Xuemei Pu
2024 J jnl
Computational insights into diverse binding modes of the allosteric modulator and their regulation on dopamine D1 receptor.
Comput. Biol. Medicine
Jianfang Chen, Yuanpeng Song, Luhan Ma, Yizhou Jin, Jin Yu, Yanzhi Guo, Yan Huang, Xuemei Pu
2024 J jnl
HOPEXGB: A Consensual Model for Predicting miRNA/lncRNA-Disease Associations Using a Heterogeneous Disease-miRNA-lncRNA Information Network.
J. Chem. Inf. Model.
Jian He, Menglong Li, Jiangguo Qiu, Xuemei Pu, Yanzhi Guo
2023 J jnl
Attention Mechanism-Based Graph Neural Network Model for Effective Activity Prediction of SARS-CoV-2 Main Protease Inhibitors: Application to Drug Repurposing as Potential COVID-19 Therapy.
J. Chem. Inf. Model.
Yanling Wu, Kun Li, Menglong Li, Xuemei Pu, Yanzhi Guo
2023 J jnl
General Graph Neural Network-Based Model To Accurately Predict Cocrystal Density and Insight from Data Quality and Feature Representation.
J. Chem. Inf. Model.
Jiali Guo, Ming Sun, Xueyan Zhao, Chaojie Shi, Haoming Su, Yanzhi Guo, Xuemei Pu
2023 J jnl
Multi-omics integration analysis of GPCRs in pan-cancer to uncover inter-omics relationships and potential driver genes.
Comput. Biol. Medicine
Shiqi Li, Xin Chen, Jianfang Chen, Binjian Wu, Jing Liu, Yanzhi Guo, Menglong Li, Xuemei Pu
2022 J jnl
An Interpretable Convolutional Neural Network Framework for Analyzing Molecular Dynamics Trajectories: a Case Study on Functional States for G-Protein-Coupled Receptors.
J. Chem. Inf. Model.
Chuan Li, Jiangting Liu, Jianfang Chen, Yuan Yuan, Jin Yu, Qiaolin Gou, Yanzhi Guo, Xuemei Pu
2022 J jnl
Biased Activation Mechanism Induced by GPCR Heterodimerization: Observations from μOR/δOR Dimers.
J. Chem. Inf. Model.
Xin Chen, Yuan Yuan, Yichi Chen, Jin Yu, Jingzhou Wang, Jianfang Chen, Yanzhi Guo, Xuemei Pu
2022 J jnl
Correlated RNN Framework to Quickly Generate Molecules with Desired Properties for Energetic Materials in the Low Data Regime.
J. Chem. Inf. Model.
Chuan Li, Chenghui Wang, Ming Sun, Yan Zeng, Yuan Yuan, Qiaolin Gou, Guangchuan Wang, Yanzhi Guo, Xuemei Pu
2022 J jnl
Molecular Mechanisms of Diverse Activation Stimulated by Different Biased Agonists for the β2-Adrenergic Receptor.
J. Chem. Inf. Model.
Jianfang Chen, Jiangting Liu, Yuan Yuan, Xin Chen, Fuhui Zhang, Xuemei Pu
2022 J jnl
Probing Allosteric Regulation Mechanism of W7.35 on Agonist-Induced Activity for μOR by Mutation Simulation.
J. Chem. Inf. Model.
Fuhui Zhang, Xin Chen, Jianfang Chen, Yanjiani Xu, Shiqi Li, Yanzhi Guo, Xuemei Pu
2020 J jnl
A Novel Detector Based on Convolution Neural Networks for Multiscale SAR Ship Detection in Complex Background.
Sensors
Wenxin Dai, Yuqing Mao, Rongao Yuan, Yijing Liu, Xuemei Pu, Chuan Li
2020 J jnl
The landscape of miRNA-related ceRNA networks for marking different renal cell carcinoma subtypes.
Briefings Bioinform.
Liu Qin, Yanhong Liu, Menglong Li, Xuemei Pu, Yanzhi Guo
2020 J jnl
Uncovering the prognostic gene signatures for the improvement of risk stratification in cancers by using deep learning algorithm coupled with wavelet transform.
BMC Bioinform.
Yiru Zhao, Yifan Zhou, Yuan Liu, Yinyi Hao, Menglong Li, Xuemei Pu, Chuan Li, Zhining Wen
2019 J jnl
A Novel Convolutional Neural Network Architecture for SAR Target Recognition.
J. Sensors
Yinjie Xie, Wenxin Dai, Zhenxin Hu, Yijing Liu, Chuan Li, Xuemei Pu
2019 J jnl
Molecular Mechanism Regarding Allosteric Modulation of Ligand Binding and the Impact of Mutations on Dimerization for CCR5 Homodimer.
J. Chem. Inf. Model.
Fuhui Zhang, Yuan Yuan, Minghui Xiang, Yanzhi Guo, Menglong Li, Yijing Liu, Xuemei Pu
2018 J jnl
Individually double minimum-distance definition of protein-RNA binding residues and application to structure-based prediction.
J. Comput. Aided Mol. Des.
Wen Hu, Liu Qin, Menglong Li, Xuemei Pu, Yanzhi Guo
2017 J jnl
Effective prediction of bacterial type IV secreted effectors by combined features of both C-termini and N-termini.
J. Comput. Aided Mol. Des.
Yu Wang, Yanzhi Guo, Xuemei Pu, Menglong Li
2015 J jnl
A comparative study of family-specific protein-ligand complex affinity prediction based on random forest approach.
J. Comput. Aided Mol. Des.
Yu Wang, Yanzhi Guo, Qifan Kuang, Xuemei Pu, Yue Ji, Zhihang Zhang, Menglong Li
2015 J jnl
Exploring the relationship between hub proteins and drug targets based on GO and intrinsic disorder.
Comput. Biol. Chem.
Yuanyuan Fu, Yanzhi Guo, Yuelong Wang, Jiesi Luo, Xuemei Pu, Menglong Li, Zhihang Zhang
2013 J jnl
In silico identification of Gram-negative bacterial secreted proteins from primary sequence.
Comput. Biol. Medicine
Lezheng Yu, Jiesi Luo, Yanzhi Guo, Yizhou Li, Xuemei Pu, Menglong Li
2012 J jnl
Predicting deleterious non-synonymous single nucleotide polymorphisms in signal peptides based on hybrid sequence attributes.
Comput. Biol. Chem.
Wenli Qin, Yizhou Li, Juan Li, Lezheng Yu, Di Wu, Runyu Jing, Xuemei Pu, Yanzhi Guo, Menglong Li
2012 J jnl
Prediction of flavin mono-nucleotide binding sites using modified PSSM profile and ensemble support vector machine.
Comput. Biol. Medicine
Xia Wang, Gang Mi, Cuicui Wang, Yongqing Zhang, Juan Li, Yanzhi Guo, Xuemei Pu, Menglong Li