Xue Li

22 papers A* 1Journal 17Unranked 4
YearRankTypeTitle / Venue / Authors
2026 J jnl
An end-to-end DNA storage coding method based on a low-complexity multiple biological constraints loss and RL-inspired differentiable solver.
Expert Syst. Appl.
Xiang Liu, Yanfen Zheng, Xue Li, Bin Wang, Shihua Zhou, Ben Cao, Pan Zheng
2026 J jnl
Integrating histology and spatial transcriptomics via multimodal transformers and contrastive representation learning for accurate gene expression prediction.
J. Biomed. Informatics
Kai Wang, Liuming Shi, Xue Li, Wei Li, Bin Wang, Shihua Zhou, Ben Cao, Pan Zheng
2026 A* conf
Learning Structurally Stabilized Representations for Lossless DNA Storage.
AAAI
Ben Cao, Xue Li, Tiantian He, Bin Wang, Shihua Zhou, Xiaohu Wu, Qiang Zhang
2025 J jnl
Achieving handle-level random access in an encrypted DNA archival storage system via frequency dictionary mapping coding.
Patterns
Ben Cao, Xue Li, Bin Wang, Tiantian He, Yanfen Zheng, Xiaokang Zhang, Qiang Zhang
2025 J jnl
Alphappimi: a comprehensive deep learning framework for predicting PPI-modulator interactions.
J. Cheminformatics
Dayan Liu, Tao Song, Shuang Wang, Xue Li, Peifu Han, Jianxin Wang, Shudong Wang
2025 J jnl
DiffMeta-RL: Reinforcement Learning-Guided Graph Diffusion for Metabolically Stable Molecular Generation.
J. Chem. Inf. Model.
Dayan Liu, Tao Song, Shuang Wang, Xue Li, Peifu Han, Gehang Ju, Jianmin Wang, Shudong Wang
2025 J jnl
Gene-MOE: A Sparsely Gated Cancer Diagnosis and Prognosis Framework Exploiting Pan-Cancer Genomic Information.
IEEE Trans. Comput. Biol. Bioinform.
Xiangyu Meng, Xue Li, Qing Yang, Huanhuan Dai, Lian Qiao, Hongzhen Ding, Long Hao, Xun Wang
2025 J jnl
MVSO-PPIS: a structured objective learning model for protein-protein interaction sites prediction via multi-view graph information integration.
Bioinform.
Shuang Wang, Tianle Ma, Kaiyu Dong, Peifu Han, Xue Li, Junteng Ma, Mao Li, Tao Song
2025 J jnl
Multi-scale low-frequency enhanced spectral neural operator for reducing low-frequency error in partial differential equations solving.
Eng. Appl. Artif. Intell.
Fengrui Jing, Chuchu Zhai, Peizhi Zhao, Xue Li, Peifu Han, Hongzhen Ding, Yunlong Dong, Long Hao, Xu Tian, Tao Song
2025 J jnl
Predicting Mutation-Disease Associations Through Protein Interactions Via Deep Learning.
IEEE J. Biomed. Health Informatics
Xue Li, Ben Cao, Jianmin Wang, Xiangyu Meng, Shuang Wang, Yu Huang, Enrico Petretto, Tao Song
2025 J jnl
TGF-M: Topology-augmented geometric features enhance molecular property prediction.
PLoS Comput. Biol.
Wei He, Xu Tian, Xue Li, Peifu Han, Shuang Wang, Lin Liu, Tao Song
2025 — conf
TriPercept: A Unified Fine-Grained Structural Perception Model for Molecular Property Prediction.
BIBM
Wei He, Xue Li, Xu Tian, Peifu Han, Kexin Jin, Shuang Wang, Tao Song
2024 — conf
KGM4DTI: A Depression Knowledge Graph-Driven Multi-semantic Multi-view Computational Framework for Drug-Target Interaction Prediction.
BIBM
Xu Tian, Peifu Han, Xue Li, Hongzhen Ding, Wei He, Fengrui Jing, Shuang Wang, Xun Wang, Tao Song
2024 J jnl
Learning Structurally Stabilized Representations for Multi-modal Lossless DNA Storage.
CoRR
Ben Cao, Tiantian He, Xue Li, Bin Wang, Xiaohu Wu, Qiang Zhang, Yew-Soon Ong
2024 J jnl
MEG-PPIS: a fast protein-protein interaction site prediction method based on multi-scale graph information and equivariant graph neural network.
Bioinform.
Hongzhen Ding, Xue Li, Peifu Han, Xu Tian, Fengrui Jing, Shuang Wang, Tao Song, Hanjiao Fu, Na Kang
2024 J jnl
MIPPIS: protein-protein interaction site prediction network with multi-information fusion.
BMC Bioinform.
Shuang Wang, Kaiyu Dong, Dingming Liang, Yunjing Zhang, Xue Li, Tao Song
2024 — conf
PepPFN: protein-peptide binding residues prediction via pre-trained module-based Fourier Network.
CAI
Xue Li, Ben Cao, Hongzhen Ding, Na Kang, Tao Song
2024 — conf
Semi-Template Retrosynthesis Prediction with 3D Spatial Structures and Reaction Center Disconnection Rules.
BIBM
Xin Li, Zishuai Wei, Shuang Wang, Peifu Han, Xue Li, Tao Song
2023 J jnl
MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network.
Briefings Bioinform.
Xue Li, Peifu Han, Wenqi Chen, Changnan Gao, Shuang Wang, Tao Song, Muyuan Niu, Alfonso Rodríguez-Patón
2023 J jnl
QuantumTox: Utilizing quantum chemistry with ensemble learning for molecular toxicity prediction.
Comput. Biol. Medicine
Xun Wang, Lulu Wang, Shuang Wang, Yongqi Ren, Wenqi Chen, Xue Li, Peifu Han, Tao Song
2022 J jnl
RGN: Residue-Based Graph Attention and Convolutional Network for Protein-Protein Interaction Site Prediction.
J. Chem. Inf. Model.
Shuang Wang, Wenqi Chen, Peifu Han, Xue Li, Tao Song
2020 J jnl
K-Means Multi-Verse Optimizer (KMVO) Algorithm to Construct DNA Storage Codes.
IEEE Access
Ben Cao, Sue Zhao, Xue Li, Bin Wang