Xiyun Jin - RankMe

13 papers Journal 13

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	TriCLFF: a multi-modal feature fusion framework using contrastive learning for spatial domain identification. Briefings Bioinform. Fenglan Pang, Guangfu Xue, Wenyi Yang, Yideng Cai, Jinhao Que, Haoxiu Sun, Pingping Wang, Shuaiyu Su, Xiyun Jin, Qian Ding, Zuxiang Wang, Meng Luo, Yuexin Yang, Yi Lin, Renjie Tan, Yusong Liu, Zhaochun Xu, Qinghua Jiang
2023	J	`jnl`	DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data. Bioinform. Wenyi Yang, Pingping Wang, Meng Luo, Yideng Cai, Chang Xu, Guangfu Xue, Xiyun Jin, Rui Cheng, Jinhao Que, Fenglan Pang, Yuexin Yang, Huan Nie, Qinghua Jiang, Zhigang Liu, Zhaochun Xu
2022	J	`jnl`	Identification of alternative splicing-derived cancer neoantigens for mRNA vaccine development. Briefings Bioinform. Rui Cheng, Zhaochun Xu, Meng Luo, Pingping Wang, Huimin Cao, Xiyun Jin, Wenyang Zhou, Lixing Xiao, Qinghua Jiang
2022	J	`jnl`	MutCov: A pipeline for evaluating the effect of mutations in spike protein on infectivity and antigenicity of SARS-CoV-2. Comput. Biol. Medicine Wenyang Zhou, Chang Xu, Meng Luo, Pingping Wang, Zhaochun Xu, Guangfu Xue, Xiyun Jin, Yan Huang, Yiqun Li, Huan Nie, Qinghua Jiang, Anastasia A. Anashkina
2022	J	`jnl`	Network analysis between neuron dysfunction and neuroimmune response based on neural single-cell transcriptome of COVID-19 patients. Comput. Biol. Medicine Xiaoyu Lin, Huan Nie, Ran Tang, Pingping Wang, Xiyun Jin, Qinghua Jiang, Fang Han, Na Chen, Yu Li
2021	J	`jnl`	CeRNASeek: an R package for identification and analysis of ceRNA regulation. Briefings Bioinform. Mengying Zhang, Xiyun Jin, Junyi Li, Yi Tian, Qi Wang, Xinhui Li, Juan Xu, Yongsheng Li, Xia Li
2021	J	`jnl`	Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profiles. Briefings Bioinform. Yan Huang, Pingping Wang, Wenyang Zhou, Meng Luo, Zhaochun Xu, Rui Cheng, Chang Xu, Xiyun Jin, Yiqun Li, Qinghua Jiang
2021	J	`jnl`	DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor. Briefings Bioinform. Zhaochun Xu, Meng Luo, Weizhong Lin, Guangfu Xue, Pingping Wang, Xiyun Jin, Chang Xu, Wenyang Zhou, Yideng Cai, Wenyi Yang, Huan Nie, Qinghua Jiang
2021	J	`jnl`	Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V(D)J sequencing. Briefings Bioinform. Xiyun Jin, Wenyang Zhou, Meng Luo, Pingping Wang, Zhaochun Xu, Kexin Ma, Huimin Cao, Chang Xu, Yan Huang, Rui Cheng, Lixing Xiao, Xiaoyu Lin, Fenglan Pang, Yiqun Li, Huan Nie, Qinghua Jiang
2019	J	`jnl`	Landscape of the long non-coding RNA transcriptome in human heart. Briefings Bioinform. Chunjie Jiang, Na Ding, Junyi Li, Xiyun Jin, Lili Li, Tao Pan, Caiqin Huo, Yongsheng Li, Juan Xu, Xia Li
2019	J	`jnl`	Survey of miRNA-miRNA cooperative regulation principles across cancer types. Briefings Bioinform. Tingting Shao, Guangjuan Wang, Hong Chen, Yunjin Xie, Xiyun Jin, Jing Bai, Juan Xu, Xia Li, Jian Huang, Yan Jin, Yongsheng Li
2019	J	`jnl`	Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk. Briefings Bioinform. Yongsheng Li, Xiyun Jin, Zishan Wang, Lili Li, Hong Chen, Xiaoyu Lin, Song Yi, Yunpeng Zhang, Juan Xu
2019	J	`jnl`	Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases. Briefings Bioinform. Yongsheng Li, Caiqin Huo, Tao Pan, Lili Li, Xiyun Jin, Xiaoyu Lin, Juan Chen, Jinwen Zhang, Zheng Guo, Juan Xu, Xia Li