Xiuzhen Huang

55 papers A* 1A 1B 2C 2Misc 2Journal 27Unranked 18
YearRankTypeTitle / Venue / Authors
2026 J jnl
Benchmarking large language models for identifying transcription factor regulatory interactions.
Bioinform.
Lake Noel, Yi-Wen Hsiao, Yimeng He, Andrew Hung, Xiaojiang Cui, Edward Ray, Jason H. Moore, Pei-Chen Peng, Xiuzhen Huang
2026 J jnl
From Global Radiomics to Parametric Maps: A Unified Workflow Fusing Radiomics and Deep Learning for PDAC Detection.
CoRR
Zengtian Deng, Yimeng He, Yu Shi, Lixia Wang, Touseef Ahmad Qureshi, Xiuzhen Huang, Debiao Li
2025 — conf
Cancer Diseases Classification with Sparse Neural Networks: An Information-Theoretic Approach.
ICCABS
Zahra Jandaghi, Sixiang Zhang, Xiuzhen Huang, Liming Cai
2024 J jnl
Advancing LGBTQ+ inclusion in STEM education and AI research.
Patterns
Emily F. Wong, Ryan J. Urbanowicz, Tiffani J. Bright, Nicholas P. Tatonetti, Yi-Wen Hsiao, Xiuzhen Huang, Jason H. Moore, Pei-Chen Peng
2022 J jnl
An Ensemble of U-Net Models for Kidney Tumor Segmentation With CT Images.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jason L. Causey, Jonathan W. Stubblefield, Jake A. Qualls, Jennifer Fowler, Lingrui Cai, Karl Walker, Yuanfang Guan, Xiuzhen Huang
2022 B conf
CrossCas: A Novel Cross-Platform Approach for Predicting Cascades in Online Social Networks with Hidden Markov Model.
GLOBECOM
Jinwei Liu, Xiaonan Zhang, Richard A. Aló, Xiuzhen Huang, Long Cheng, Feng Deng
2022 J jnl
Editorial.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiuzhen Huang, Yu Zhang, Xuan Guo
2022 — conf
NBT (no-boundary thinking): needed to attend to ethical implications of data and AI.
BCB
Joan Peckham, Andy D. Perkins, Tayo Obafemi-Ajayi, Xiuzhen Huang
2022 J jnl
Spatial Pyramid Pooling With 3D Convolution Improves Lung Cancer Detection.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jason L. Causey, Keyu Li, Xianghao Chen, Wei Dong, Karl Walker, Jake A. Qualls, Jonathan W. Stubblefield, Jason H. Moore, Yuanfang Guan, Xiuzhen Huang
2022 — conf
Team building without boundaries.
BCB
Andy D. Perkins, Joan Peckham, Tayo Obafemi-Ajayi, Xiuzhen Huang
2021 — ed.
BCB '21: 12th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Gainesville, Florida, USA, August 1-4, 2021
BCB
Hongmei Jiang, Xiuzhen Huang, Jiajie Zhang
2021 J jnl
Identify differentially expressed genes with large background samples.
Int. J. Comput. Biol. Drug Des.
Jennifer Fowler, Jonathan W. Stubblefield, Jason L. Causey, Jake A. Qualls, Wei Dong, Hongmei Jiang, Karl Walker, Yuanfang Guan, Xiuzhen Huang
2020 J jnl
Detecting Asymmetric Patterns and Localizing Cancers on Mammograms.
Patterns
Yuanfang Guan, Xueqing Wang, Hongyang Li, Zhenning Zhang, Xianghao Chen, Omer Siddiqui, Sara Nehring, Xiuzhen Huang
2019 J jnl
Lung cancer screening with low-dose CT scans using a deep learning approach.
CoRR
Jason L. Causey, Yuanfang Guan, Wei Dong, Karl Walker, Jake A. Qualls, Fred W. Prior, Xiuzhen Huang
2018 — conf
EBIC: a next-generation evolutionary-based parallel biclustering method.
GECCO (Companion)
Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore
2018 J jnl
EBIC: an artificial intelligence-based parallel biclustering algorithm for pattern discovery.
CoRR
Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore
2018 J jnl
EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery.
Bioinform.
Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore
2018 J jnl
Highly accurate model for prediction of lung nodule malignancy with CT scans.
CoRR
Jason L. Causey, Junyu Zhang, Shiqian Ma, Bo Jiang, Jake A. Qualls, David G. Politte, Fred W. Prior, Shuzhong Zhang, Xiuzhen Huang
2018 J jnl
runibic: a Bioconductor package for parallel row-based biclustering of gene expression data.
Bioinform.
Patryk Orzechowski, Artur Panszczyk, Xiuzhen Huang, Jason H. Moore
2017 Misc conf
No-Boundary Thinking in Bioinformatics.
PSB
Jason H. Moore, Steven F. Jennings, Casey S. Greene, Lawrence E. Hunter, Andy D. Perkins, ClarLynda R. Williams-DeVane, Donald C. Wunsch, Zhongming Zhao, Xiuzhen Huang
2017 J jnl
Novel Low Cost 3D Surface Model Reconstruction System for Plant Phenotyping.
J. Imaging
Suxing Liu, Lucia M. Acosta-Gamboa, Xiuzhen Huang, Argelia Lorence
2016 J jnl
BinPacker: Packing-Based
PLoS Comput. Biol.
Juntao Liu, Guojun Li, Zheng Chang, Ting Yu, Bingqiang Liu, Rick McMullen, Pengyin Chen, Xiuzhen Huang
2016 — ch.
Tensor models: solution methods and applications.
Big Data over Networks
Shiqian Ma, Bo Jiang, Xiuzhen Huang, Shuzhong Zhang
2015 J jnl
Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm.
BioData Min.
Xiuzhen Huang, Steven F. Jennings, Barry Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy D. Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Karl Walker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, Jason H. Moore
2014 C conf
Stochastic k-Tree Grammar and Its Application in Biomolecular Structure Modeling.
LATA
Liang Ding, Abdul Samad, Xingran Xue, Xiuzhen Huang, Russell L. Malmberg, Liming Cai
2013 J jnl
No-boundary thinking in bioinformatics research.
BioData Min.
Xiuzhen Huang, Barry Bruce, Alison Buchan, Clare Bates Congdon, Carole L. Cramer, Steven F. Jennings, Hongmei Jiang, Zenglu Li, Gail McClure, Rick McMullen, Jason H. Moore, Bindu Nanduri, Joan Peckham, Andy D. Perkins, Shawn W. Polson, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Zhongming Zhao
2013 J jnl
Polynomial kernels collapse the W-hierarchy.
CoRR
Liang Ding, Abdul Samad, Xingran Xue, Xiuzhen Huang, Liming Cai
2012 — conf
A Unified Adaptive Co-identification Framework for High-D Expression Data.
PRIB
Shuzhong Zhang, Kun Wang, Cody Ashby, Bilian Chen, Xiuzhen Huang
2012 — conf
Study of Protein Structure Alignment Problem in Parameterized Computation.
BIOINFORMATICS
Cody Ashby, Kun Wang, Carole L. Cramer, Xiuzhen Huang
2011 — conf
A New Framework for Co-clustering of Gene Expression Data.
PRIB
Shuzhong Zhang, Kun Wang, Bilian Chen, Xiuzhen Huang
2011 — conf
Graph-based approach for gene markers and applications in next-generation sequencing data analysis.
BCB
Daniel Johnson, Kun Wang, Carole L. Cramer, Xiuzhen Huang
2010 — conf
Analyzing genetic factors involved in recombinant protein expression enhancement.
BIBM Workshops
Daniel Johnson, Keat Teoh, Cody Ashby, Elizabeth Hood, Xiuzhen Huang
2010 J jnl
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results.
Algorithmica
Liming Cai, Xiuzhen Huang
2008 — conf
A Relational Approach for Pathway Analysis.
IMSCCS
Cody Ashby, Xiuzhen Huang, Jeff Jenness, Joseph Kerby
2008 J jnl
A practical comparison of two K-Means clustering algorithms.
BMC Bioinform.
Gregory A. Wilkin, Xiuzhen Huang
2008 — conf
Addressing Bio-sequence and Bio-structure Problems.
IMSCCS
Xiuzhen Huang
2008 J jnl
Parameterized Complexity and Biopolymer Sequence Comparison.
Comput. J.
Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances A. Rosamond, Yinglei Song
2007 — conf
K-Means Clustering Algorithms: Implementation and Comparison.
IMSCCS
Gregory A. Wilkin, Xiuzhen Huang
2007 — conf
Parameterized Graph Problems in Computational Biology.
IMSCCS
Xiuzhen Huang, Jing Lai
2007 J jnl
Polynomial time approximation schemes and parameterized complexity.
Discret. Appl. Math.
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
2006 J jnl
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
2006 — conf
Fixed-Parameter Approximation: Conceptual Framework and Approximability Results.
IWPEC
Liming Cai, Xiuzhen Huang
2006 Misc conf
Lower Bounds and Parameterized Approach for Longest Common Subsequence.
COCOON
Xiuzhen Huang
2006 — conf
Maximum Common Subgraph: Upper Bound and Lower Bound Results.
IMSCCS (1)
Xiuzhen Huang, Jing Lai
2006 J jnl
Maximum common subgraph: some upper bound and lower bound results.
BMC Bioinform.
Xiuzhen Huang, Jing Lai, Steven F. Jennings
2006 — conf
Negative-Weight Cycle Algorithms.
FCS
Xiuzhen Huang
2006 — conf
On PTAS for Planar Graph Problems.
IFIP TCS
Xiuzhen Huang, Jianer Chen
2006 J jnl
On the computational hardness based on linear FPT-reductions.
J. Comb. Optim.
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
2006 — conf
Parameterized Computation of LCS for Two Sequences.
BIOCOMP
Yuan Lin, Jeff Jenness, Xiuzhen Huang
2006 J jnl
Strong computational lower bounds via parameterized complexity.
J. Comput. Syst. Sci.
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
2005 C conf
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment.
WABI
Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
2005 J jnl
Tight lower bounds for certain parameterized NP-hard problems.
Inf. Comput.
Jianer Chen, Benny Chor, Mike Fellows, Xiuzhen Huang, David W. Juedes, Iyad A. Kanj, Ge Xia
2004 A* conf
Linear FPT reductions and computational lower bounds.
STOC
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
2004 B conf
Polynomial Time Approximation Schemes and Parameterized Complexity.
MFCS
Jianer Chen, Xiuzhen Huang, Iyad A. Kanj, Ge Xia
2004 A conf
Tight Lower Bounds for Certain Parameterized NP-Hard Problems.
CCC
Jianer Chen, Benny Chor, Mike Fellows, Xiuzhen Huang, David W. Juedes, Iyad A. Kanj, Ge Xia