Xiufen Zou - RankMe

66 papers A 1B 4Journal 53Unranked 8

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Cell-cell communication inference and analysis: biological mechanisms, computational approaches, and future opportunities. CoRR Xiangzheng Cheng, Haili Huang, Ye Su, Qing Nie, Xiufen Zou, Suoqin Jin
2025	J	`jnl`	Integrating multiscale mathematical modeling and multidimensional data reveals the effects of epigenetic instability on acquired drug resistance in cancer. PLoS Comput. Biol. Shun Wang, Jinzhi Lei, Xiufen Zou, Suoqin Jin
2025	J	`jnl`	Mathematical Modeling and Solution Landscape Reveal Cancer Progression Dynamics in Tumor Ecological Microenvironment. SIAM J. Appl. Math. Shun Wang, Tengfei Wang, Shuonan Wu, Lei Zhang, Xiufen Zou
2025	J	`jnl`	PITCH: A Pathway-Induced Prioritization of Personalized Cancer Driver Genes Based on Higher-Order Interactions. IEEE J. Biomed. Health Informatics Yuhe Wang, Suoqin Jin, Xiufen Zou
2024	J	`jnl`	Mathematical modeling and dynamic analysis for cancer resistance incorporating persister cells. Commun. Nonlinear Sci. Numer. Simul. Ke Qi, Shun Wang, Yuyang Xiao, Xiufen Zou
2023	J	`jnl`	Mathematical Modeling and Dynamical Analysis for Tumor Cells and Tumor Propagating Cells Controlled by G9a Inhibitors. Int. J. Bifurc. Chaos Juan Shen, Zhihao Yao, Xuewen Tan, Xiufen Zou
2022	J	`jnl`	Data-driven mathematical modeling and quantitative analysis of cell dynamics in the tumor microenvironment. Comput. Math. Appl. Sicheng Li, Shun Wang, Xiufen Zou
2022	J	`jnl`	scLRTD : A Novel Low Rank Tensor Decomposition Method for Imputing Missing Values in Single-Cell Multi-Omics Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. Zhijie Ni, Xiaoying Zheng, Xiao Zheng, Xiufen Zou
2021	J	`jnl`	Data-Driven Mathematical Modeling and Dynamical Analysis for SARS-CoV-2 Coinfection with Bacteria. Int. J. Bifurc. Chaos Yu Zhou, Mingzhan Huang, Ying'an Jiang, Xiufen Zou
2021	J	`jnl`	Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients. PLoS Comput. Biol. Shun Wang, Mengqian Hao, Zishu Pan, Jinzhi Lei, Xiufen Zou
2021	J	`jnl`	Influence of the Binomial Crossover on Performance of Randomized Search Heuristics. CoRR Cong Wang, Yu Chen, Jun He, Xiufen Zou
2021	J	`jnl`	SCCLRR: A Robust Computational Method for Accurate Clustering Single Cell RNA-Seq Data. IEEE J. Biomed. Health Informatics Wei Zhang, YuanYuan Li, Xiufen Zou
2021	J	`jnl`	scASK: A Novel Ensemble Framework for Classifying Cell Types Based on Single-cell RNA-seq Data. IEEE J. Biomed. Health Informatics Bo Liu, Fang-Xiang Wu, Xiufen Zou
2020	J	`jnl`	Predicting Essential Proteins by Integrating Network Topology, Subcellular Localization Information, Gene Expression Profile and GO Annotation Data. IEEE ACM Trans. Comput. Biol. Bioinform. Wei Zhang, Jia Xu, Xiufen Zou
2020	J	`jnl`	Tensor-based mathematical framework and new centralities for temporal multilayer networks. Inf. Sci. Dingjie Wang, Wei Yu, Xiufen Zou
2020	J	`jnl`	scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data. PLoS Comput. Biol. Xiao Zheng, Yuan Huang, Xiufen Zou
2020	J	`jnl`	scRCMF: Identification of Cell Subpopulations and Transition States From Single-Cell Transcriptomes. IEEE Trans. Biomed. Eng. Xiaoying Zheng, Suoqin Jin, Qing Nie, Xiufen Zou
2019	J	`jnl`	Control of multilayer biological networks and applied to target identification of complex diseases. BMC Bioinform. Wei Zheng, Dingjie Wang, Xiufen Zou
2019	J	`jnl`	Identification of Interaction Clusters Using a Semi-supervised Hierarchical Clustering Method. CoRR Yu Chen, Yuanyuan Yang, Yaochu Jin, Xiufen Zou
2019	J	`jnl`	Inferring Large-Scale Gene Regulatory Networks Using a Randomized Algorithm Based on Singular Value Decomposition. IEEE ACM Trans. Comput. Biol. Bioinform. Anjing Fan, Haitao Wang, Hua Xiang, Xiufen Zou
2019	J	`jnl`	Integrating network topology, gene expression data and GO annotation information for protein complex prediction. J. Bioinform. Comput. Biol. Wei Zhang, Jia Xu, YuanYuan Li, Xiufen Zou
2018	J	`jnl`	Correction to "Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information". IEEE ACM Trans. Comput. Biol. Bioinform. Wei Zhang, Jia Xu, YuanYuan Li, Xiufen Zou
2018	J	`jnl`	Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information. IEEE ACM Trans. Comput. Biol. Bioinform. Wei Zhang, Jia Xu, YuanYuan Li, Xiufen Zou
2018	J	`jnl`	Trajectory Control in Nonlinear Networked Systems and Its Applications to Complex Biological Systems. SIAM J. Appl. Math. Suoqin Jin, Dingjie Wang, Xiufen Zou
2017	J	`jnl`	Control Energy and controllability of multilayer Networks. Adv. Complex Syst. Dingjie Wang, Xiufen Zou
2017	J	`jnl`	Inference of Biochemical S-Systems via Mixed-Variable Multiobjective Evolutionary Optimization. Comput. Math. Methods Medicine Yu Chen, Dong Chen, Xiufen Zou
2017	J	`jnl`	Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization. PLoS Comput. Biol. Yuewu Liu, Xiufen Zou
2017	J	`jnl`	Several Indicators of Critical Transitions for Complex Diseases Based on Stochastic Analysis. Comput. Math. Methods Medicine Gang Wang, YuanYuan Li, Xiufen Zou
2016	J	`jnl`	Identifying disease modules and components of viral infections based on multi-layer networks. Sci. China Inf. Sci. YuanYuan Li, Xiufen Zou
2016	—	`conf`	Inference of genetic regulatory network for stem cell using single cells expression data. BIBM Jiangyong Wei, Xiaohua Hu, Xiufen Zou, Tianhai Tian
2016	J	`jnl`	Qualitative Analysis of Critical Transitions in Complex Disease Propagation from a Dynamical Systems Perspective. Int. J. Bifurc. Chaos Gang Wang, Xiufen Zou
2015	J	`jnl`	A New Method for Detecting Protein Complexes based on the Three Node Cliques. IEEE ACM Trans. Comput. Biol. Bioinform. Wei Zhang, Xiufen Zou
2015	J	`jnl`	A binary differential evolution algorithm learning from explored solutions. Neurocomputing Yu Chen, Weicheng Xie, Xiufen Zou
2015	J	`jnl`	Estimation of control Energy and control Strategies for Complex Networks. Adv. Complex Syst. Dingjie Wang, Suoqin Jin, Fang-Xiang Wu, Xiufen Zou
2015	J	`jnl`	Inferring Gene Regulatory Network Using An Evolutionary Multi-Objective Method. CoRR Yu Chen, Xiufen Zou
2015	J	`jnl`	Mathematical Modeling and Nonlinear Dynamical Analysis of Cell Growth in Response to Antibiotics. Int. J. Bifurc. Chaos Suoqin Jin, Lili Niu, Gang Wang, Xiufen Zou
2015	J	`jnl`	Mathematical modeling reveals the mechanisms of feedforward regulation in cell fate decisions in budding yeast. Quant. Biol. Wenlong Li, Ming Yi, Xiufen Zou
2015	J	`jnl`	Optimal Control Strategy for Abnormal Innate Immune Response. Comput. Math. Methods Medicine Jinying Tan, Xiufen Zou
2014	J	`jnl`	A binary differential evolution algorithm learning from explored solutions. CoRR Yu Chen, Weicheng Xie, Xiufen Zou
2014	—	`conf`	Performance Analysis of a (1+1) Surrogate-Assisted Evolutionary Algorithm. ICIC (1) Yu Chen, Xiufen Zou
2014	J	`jnl`	Runtime analysis of a multi-objective evolutionary algorithm for obtaining finite approximations of Pareto fronts. Inf. Sci. Yu Chen, Xiufen Zou
2013	J	`jnl`	Complex Dynamical Analysis of a Coupled Network from Innate Immune responses. Int. J. Bifurc. Chaos Jinying Tan, Xiufen Zou
2013	J	`jnl`	Construction of the influenza A virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization. BMC Syst. Biol. Suoqin Jin, Xiufen Zou
2013	J	`jnl`	Diversity-maintained differential evolution embedded with gradient-based local search. Soft Comput. Weicheng Xie, Wei Yu, Xiufen Zou
2013	J	`jnl`	How can surrogates influence the convergence of evolutionary algorithms? Swarm Evol. Comput. Yu Chen, Weicheng Xie, Xiufen Zou
2013	J	`jnl`	Systematic Analysis of the Mechanisms of Virus-Triggered Type I IFN Signaling Pathways through Mathematical Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. Wei Zhang, Xiufen Zou
2012	J	`jnl`	Synchronization ability of coupled cell-cycle oscillators in changing environments. BMC Syst. Biol. Wei Zhang, Xiufen Zou
2011	—	`conf`	A Population-Based Hybrid Extremal Optimization Algorithm. ICIC (3) Yu Chen, Kai Zhang, Xiufen Zou
2011	J	`jnl`	Convergence of multi-objective evolutionary algorithms to a uniformly distributed representation of the Pareto front. Inf. Sci. Yu Chen, Xiufen Zou, Weicheng Xie
2011	J	`jnl`	Drift conditions for estimating the first hitting times of evolutionary algorithms. Int. J. Comput. Math. Yu Chen, Xiufen Zou, Jun He
2010	—	`conf`	The Data-Based Mathematical Modeling and Parameter Identification in JAK-STAT Signaling Pathway by Using a Hybrid Evolutionary Algorithm. ISICA (1) Wei Zhang, Xiufen Zou
2009	—	`conf`	A parallel evolutionary algorithm for optimal pulse-width modulation technique in power systems. GEC Summit Rongxiang Yuan, Xiufen Zou, Chunlin Xu
2009	B	`conf`	Performance assessment of DMOEA-DD with CEC 2009 MOEA competition test instances. IEEE Congress on Evolutionary Computation Minzhong Liu, Xiufen Zou, Yu Chen, Zhijian Wu
2008	B	`conf`	A Genetic Algorithm approach for selecting Tikhonov regularization parameter. IEEE Congress on Evolutionary Computation Chuansheng Wu, Jinrong He, Xiufen Zou
2008	J	`jnl`	A New Evolutionary Algorithm for Solving Many-Objective Optimization Problems. IEEE Trans. Syst. Man Cybern. Part B Xiufen Zou, Yu Chen, Minzhong Liu, Lishan Kang
2008	B	`conf`	Optimal coordination of protection relays using new hybrid evolutionary algorithm. IEEE Congress on Evolutionary Computation Chunlin Xu, Xiufen Zou, Rongxiang Yuan, Chuansheng Wu
2008	J	`jnl`	Robustness analysis of EGFR signaling network with a multi-objective evolutionary algorithm. Biosyst. Xiufen Zou, Minzhong Liu, Zishu Pan
2007	—	`conf`	A New Evolutionary Decision Theory for Many-Objective Optimization Problems. ISICA Zhuo Kang, Lishan Kang, Xiufen Zou, Minzhong Liu, Changhe Li, Ming Yang, Yan Li, Yuping Chen, Sanyou Zeng
2007	—	`conf`	An Effective Dynamical Multi-objective Evolutionary Algorithm for Solving Optimization Problems with High Dimensional Objective Space. ISICA Minzhong Liu, Xiufen Zou, Lishan Kang
2006	—	`conf`	Modeling and Optimization of the Specificity in Cell Signaling Pathways Based on a High Performance Multi-objective Evolutionary Algorithm. SEAL Xiufen Zou, Yu Chen, Zishu Pan
2005	J	`jnl`	Fast annealing genetic algorithm for multi-objective optimization problems. Int. J. Comput. Math. Xiufen Zou, Lishan Kang
2004	A	`conf`	A High Performance Multi-objective Evolutionary Algorithm Based on the Principles of Thermodynamics. PPSN Xiufen Zou, Minzhong Liu, Lishan Kang, Jun He
2003	J	`jnl`	A New Dynamical Evolutionary Algorithm Based on Statistical Mechanics. J. Comput. Sci. Technol. Yuanxiang Li, Xiufen Zou, Lishan Kang, Zbigniew Michalewicz
2003	J	`jnl`	An efficient dynamical evolutionary algorithm for global optimization. Int. J. Comput. Math. Xiufen Zou, Yuanxiang Li, Lishan Kang, Zhijian Wu
2002	B	`conf`	A dynamical evolutionary algorithm for constrained optimization problems. IEEE Congress on Evolutionary Computation Xiufen Zou, Lishan Kang, Yuanxiang Li
1996	J	`jnl`	Use of Multi-scalar Analysis for Building Lattice Models of PDE's. Parallel Algorithms Appl. Yuanxiang Li, Xiufen Zou, Zhangcan Huang