Xiting Yan

14 papers Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2025 — conf
Identifying Cellular Niches in Spatial Transcriptomics: An Investigation into the Capabilities of Large Language Models.
ACL (1)
Huanhuan Wei, Xiao Luo, Hongyi Yu, Jinping Liang, Luning Yang, Lixing Lin, Alexandra Popa, Xiting Yan
2024 J jnl
COOL: A Conjoint Perspective on Spatio-Temporal Graph Neural Network for Traffic Forecasting.
CoRR
Wei Ju, Yusheng Zhao, Yifang Qin, Siyu Yi, Jingyang Yuan, Zhiping Xiao, Xiao Luo, Xiting Yan, Ming Zhang
2024 J jnl
COOL: A Conjoint Perspective on Spatio-Temporal Graph Neural Network for Traffic Forecasting.
Inf. Fusion
Wei Ju, Yusheng Zhao, Yifang Qin, Siyu Yi, Jingyang Yuan, Zhiping Xiao, Xiao Luo, Xiting Yan, Ming Zhang
2024 J jnl
Predicting lung aging using scRNA-Seq data.
PLoS Comput. Biol.
Qi Song, Alex Singh, John E. McDonough, Taylor Sterling Adams, Robin Vos, Ruben De Man, Greg Myers, Laurens J. Ceulemans, Bart M. Vanaudenaerde, Wim A. Wuyts, Xiting Yan, Jonas Schupp, James S. Hagood, Naftali Kaminski, Ziv Bar-Joseph
2023 J jnl
A novel Bayesian framework for harmonizing information across tissues and studies to increase cell type deconvolution accuracy.
Briefings Bioinform.
Wenxuan Deng, Bolun Li, Jiawei Wang, Wei Jiang, Xiting Yan, Ningshan Li, Milica Vukmirovic, Naftali Kaminski, Jing Wang, Hongyu Zhao
2023 J jnl
Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.
BMC Bioinform.
Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan
2023 J jnl
iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.
BMC Bioinform.
Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan
2021 J jnl
G2S3: A gene graph-based imputation method for single-cell RNA sequencing data.
PLoS Comput. Biol.
Weimiao Wu, Yunqing Liu, Qile Dai, Xiting Yan, Zuoheng Wang
2021 J jnl
Openness weighted association studies: leveraging personal genome information to prioritize non-coding variants.
Bioinform.
Shuang Song, Nayang Shan, Geng Wang, Xiting Yan, Jun S. Liu, Lin Hou
2020 J jnl
Latent-space embedding of expression data identifies gene signatures from sputum samples of asthmatic patients.
BMC Bioinform.
Shaoke Lou, Tianxiao Li, Daniel Spakowicz, Xiting Yan, Geoffrey Lowell Chupp, Mark Gerstein
2017 J jnl
A novel pathway-based distance score enhances assessment of disease heterogeneity in gene expression.
BMC Bioinform.
Xiting Yan, Anqi Liang, Jose Gomez, Lauren Cohn, Hongyu Zhao, Geoffrey Lowell Chupp
2008 J jnl
Testing gene set enrichment for subset of genes: Sub-GSE.
BMC Bioinform.
Xiting Yan, Fengzhu Sun
2007 J jnl
Inferring activity changes of transcription factors by binding association with sorted expression profiles.
BMC Bioinform.
Chao Cheng, Xiting Yan, Fengzhu Sun, Lei M. Li
2006 J jnl
MARD: a new method to detect differential gene expression in treatment-control time courses.
Bioinform.
Chao Cheng, Xiaotu Ma, Xiting Yan, Fengzhu Sun, Lei M. Li