Xingyi Li

18 papers Journal 11Unranked 7
YearRankTypeTitle / Venue / Authors
2025 J jnl
Deep graph convolutional network-based multi-omics integration for cancer driver gene identification.
Briefings Bioinform.
Yingzhuo Wu, Jialuo Xu, Junming Li, Jia Gu, Xuequn Shang, Xingyi Li
2025 J jnl
DualMarker: A Multi-Source Fusion Identification Method for Prognostic Biomarkers of Breast Cancer Based on Dual-Layer Heterogeneous Network.
IEEE Trans. Comput. Biol. Bioinform.
Xingyi Li, Gaoyuan Du, Zhelin Zhao, Junming Li, Ju Xiang, Jialu Hu, Xuequn Shang
2025 — conf
Multi-Task Learning Framework for Cancer Driver Gene Identification on Multi-Network and Multi-OMICS Data.
BIBM
Yu Wang, Jialuo Xu, Junming Li, Xuequn Shang, Jia Gu, Xingyi Li
2025 J jnl
PathActMarker: an R package for inferring pathway activity of complex diseases.
Frontiers Comput. Sci.
Xingyi Li, Jun Hao, Zhelin Zhao, Junming Li, Xingyu Liao, Min Li, Xuequn Shang
2025 J jnl
Towards simplified graph neural networks for identifying cancer driver genes in heterophilic networks.
Briefings Bioinform.
Xingyi Li, Jialuo Xu, Junming Li, Jia Gu, Xuequn Shang
2024 J jnl
Multiplex Networks and Pan-Cancer Multiomics-Based Driver Gene Identification Using Graph Neural Networks.
Big Data Min. Anal.
Xingyi Li, Junming Li, Jun Hao, Xingyu Liao, Min Li, Xuequn Shang
2024 J jnl
Scbean: a python library for single-cell multi-omics data analysis.
Bioinform.
Haohui Zhang, Yuwei Wang, Bin Lian, Yiran Wang, Xingyi Li, Tao Wang, Xuequn Shang, Hui Yang, Ahmad Aziz, Jialu Hu
2023 — conf
A personalized pathway activation inference method based on pathway structure for classification of inflammatory bowel disease.
BIBM
Xingyi Li, Xuequn Shang, Zhelin Zhao, Chenzhuo Yan
2022 J jnl
A Dual Ranking Algorithm Based on the Multiplex Network for Heterogeneous Complex Disease Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xingyi Li, Ju Xiang, Fang-Xiang Wu, Min Li
2022 — conf
A multi-source fusion method to identify biomarkers for breast cancer prognosis based on dual-layer heterogeneous network.
BIBM
Xingyi Li, Zhelin Zhao, Ju Xiang, Jialu Hu, Xuequn Shang
2022 J jnl
SEPA: signaling entropy-based algorithm to evaluate personalized pathway activation for survival analysis on pan-cancer data.
Bioinform.
Xingyi Li, Min Li, Ju Xiang, Zhelin Zhao, Xuequn Shang
2021 J jnl
FUNMarker: Fusion Network-Based Method to Identify Prognostic and Heterogeneous Breast Cancer Biomarkers.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xingyi Li, Ju Xiang, Jianxin Wang, Jinyan Li, Fang-Xiang Wu, Min Li
2021 J jnl
NIDM: network impulsive dynamics on multiplex biological network for disease-gene prediction.
Briefings Bioinform.
Ju Xiang, Jiashuai Zhang, Ruiqing Zheng, Xingyi Li, Min Li
2020 — conf
A topological AUC-based biomarker ensemble method for the complex disease analysis.
BIBM
Xingyi Li, Ju Xiang, Fang-Xiang Wu, Min Li
2020 J jnl
Network-based methods for predicting essential genes or proteins: a survey.
Briefings Bioinform.
Xingyi Li, Wenkai Li, Min Zeng, Ruiqing Zheng, Min Li
2019 — conf
Classification of Schizophrenia by Iterative Random Forest Feature Selection Based on DNA Methylation Array Data.
BIBM
Xinyu Hu, Min Li, Linconghua Wang, Xingyi Li, Fang-Xiang Wu, Jianxin Wang
2019 — conf
DualRank: multiplex network-based dual ranking for heterogeneous complex disease analysis.
BIBM
Xingyi Li, Ju Xiang, Xinyu Hu, Fang-Xiang Wu, Min Li
2019 — conf
Identification of Prognostic and Heterogeneous Breast Cancer Biomarkers Based on Fusion Network and Multiple Scoring Strategies.
ICIC (2)
Xingyi Li, Ju Xiang, Jianxin Wang, Fang-Xiang Wu, Min Li