Xingjie Shi

14 papers Journal 12Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Benchmarking algorithms for spatially variable gene identification in spatial transcriptomics.
Bioinform.
Xuanwei Chen, Qinghua Ran, Junjie Tang, Zihao Chen, Siyuan Huang, Xingjie Shi, Ruibin Xi
2023 J jnl
A General Framework for Identifying Hierarchical Interactions and Its Application to Genomics Data.
J. Comput. Graph. Stat.
Xiao Zhang, Xingjie Shi, Yiming Liu, Xu Liu, Shuangge Ma
2023 — conf
Establishment and Research of a Janus SbBiSi2 Monolayer Structure Model.
ICNC-FSKD
Xingjie Shi, Yutong Zhu
2022 J jnl
MR-Corr2: a two-sample Mendelian randomization method that accounts for correlated horizontal pleiotropy using correlated instrumental variants.
Bioinform.
Qing Cheng, Tingting Qiu, Xiaoran Chai, Baoluo Sun, Yingcun Xia, Xingjie Shi, Jin Liu
2022 J jnl
SC-MEB: spatial clustering with hidden Markov random field using empirical Bayes.
Briefings Bioinform.
Yi Yang, Xingjie Shi, Wei Liu, Qiuzhong Zhou, Mai Chan Lau, Jeffrey Chun Tatt Lim, Lei Sun, Cedric Chuan Young Ng, Joe Yeong, Jin Liu
2021 J jnl
The statistical practice of the GTEx Project: from single to multiple tissues.
Quant. Biol.
Xu Liao, Xiaoran Chai, Xingjie Shi, Lin S. Chen, Jin Liu
2020 J jnl
CoMM-S2: a collaborative mixed model using summary statistics in transcriptome-wide association studies.
Bioinform.
Yi Yang, Xingjie Shi, Yuling Jiao, Jian Huang, Min Chen, Xiang Zhou, Lei Sun, Xinyi Lin, Can Yang, Jin Liu
2019 J jnl
VIMCO: variational inference for multiple correlated outcomes in genome-wide association studies.
Bioinform.
Xingjie Shi, Yuling Jiao, Yi Yang, Ching-Yu Cheng, Can Yang, Xinyi Lin, Jin Liu
2018 J jnl
A Forward and Backward Stagewise algorithm for nonconvex loss functions with adaptive Lasso.
Comput. Stat. Data Anal.
Xingjie Shi, Yuan Huang, Jian Huang, Shuangge Ma
2015 J jnl
Combining multidimensional genomic measurements for predicting cancer prognosis: observations from TCGA.
Briefings Bioinform.
Qing Zhao, Xingjie Shi, Yang Xie, Jian Huang, Ben-Chang Shia, Shuangge Ma
2015 J jnl
Deciphering the associations between gene expression and copy number alteration using a sparse double Laplacian shrinkage approach.
Bioinform.
Xingjie Shi, Qing Zhao, Jian Huang, Yang Xie, Shuangge Ma
2015 J jnl
Measures for the degree of overlap of gene signatures and applications to TCGA.
Briefings Bioinform.
Xingjie Shi, Huangdi Yi, Shuangge Ma
2014 J jnl
Similarity of markers identified from cancer gene expression studies: observations from GEO.
Briefings Bioinform.
Xingjie Shi, Shihao Shen, Jin Liu, Jian Huang, Yong Zhou, Shuangge Ma
2009 — conf
Commodity Cache Management for Storage Server.
GCC
Xingjie Shi, Yang Yin, Yanmin Ma