Xin He

14 papers Misc 1Journal 9Unranked 3
YearRankTypeTitle / Venue / Authors
2011 J jnl
BeeSpace Navigator: exploratory analysis of gene function using semantic indexing of biological literature.
Nucleic Acids Res.
Moushumi Sen Sarma, David Arcoleo, Radhika S. Khetani, Brant W. Chee, Xu Ling, Xin He, Jing Jiang, Qiaozhu Mei, ChengXiang Zhai, Bruce R. Schatz
2010 J jnl
BSQA: integrated text mining using entity relation semantics extracted from biological literature of insects.
Nucleic Acids Res.
Xin He, Yanen Li, Radhika S. Khetani, Barry Sanders, Yue Lu, Xu Ling, ChengXiang Zhai, Bruce R. Schatz
2010 J jnl
Identifying overrepresented concepts in gene lists from literature: a statistical approach based on Poisson mixture model.
BMC Bioinform.
Xin He, Moushumi Sen Sarma, Xu Ling, Brant W. Chee, ChengXiang Zhai, Bruce R. Schatz
2010 J jnl
Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression.
PLoS Comput. Biol.
Xin He, Md. Abul Hassan Samee, Charles Blatti, Saurabh Sinha
2009 J jnl
Alignment and Prediction of
PLoS Comput. Biol.
Xin He, Xu Ling, Saurabh Sinha
2009 — —
Computational Models of Function and Evolution of cis-Regulatory Sequences
Xin He
2009 J jnl
Detecting gene clusters under evolutionary constraint in a large number of genomes.
Bioinform.
Xu Ling, Xin He, Dong Xin
2008 J jnl
Efficiently Identifying Max-Gap Clusters in Pairwise Genome Comparison.
J. Comput. Biol.
Xu Ling, Xin He, Dong Xin, Jiawei Han
2007 J jnl
Generating gene summaries from biomedical literature: A study of semi-structured summarization.
Inf. Process. Manag.
Xu Ling, Jing Jiang, Xin He, Qiaozhu Mei, ChengXiang Zhai, Bruce R. Schatz
2007 — conf
Language Models for Genomics Information Retrieval: UIUC at TREC 2007 Genomics Track.
TREC
Yue Lu, Jing Jiang, Xu Ling, Xin He, ChengXiang Zhai
2007 J jnl
MORPH: Probabilistic Alignment Combined with Hidden Markov Models of
PLoS Comput. Biol.
Saurabh Sinha, Xin He
2006 Misc conf
Automatically Generating Gene Summaries from Biomedical Literature.
Pacific Symposium on Biocomputing
Xu Ling, Jing Jiang, Xin He, Qiaozhu Mei, ChengXiang Zhai, Bruce R. Schatz
2006 — conf
Robust Pseudo Feedback Estimation and HMM Passage Extraction: UIUC at TREC 2006 Genomics Track.
TREC
Jing Jiang, Xin He, ChengXiang Zhai
2005 — conf
UIUC/MUSC at TREC 2005 Genomics Track.
TREC
ChengXiang Zhai, Xu Ling, Xin He, Atulya Velivelli, Xuanhui Wang, Hui Fang, Azadeh Shakery, Xinghua Lu