Xilin Shen

26 papers Journal 21Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
A deep learning model for characterizing protein-RNA interactions from sequences at single-base resolution.
Patterns
Xilin Shen, Yayan Hou, Xueer Wang, Chunyong Zhang, Jilei Liu, Hongru Shen, Wei Wang, Yichen Yang, Meng Yang, Yang Li, Jin Zhang, Yan Sun, Kexin Chen, Lei Shi, Xiangchun Li
2022 J jnl
A universal approach for integrating super large-scale single-cell transcriptomes by exploring gene rankings.
Briefings Bioinform.
Hongru Shen, Xilin Shen, Mengyao Feng, Dan Wu, Chao Zhang, Yichen Yang, Meng Yang, Jiani Hu, Jilei Liu, Wei Wang, Yang Li, Qiang Zhang, Jilong Yang, Kexin Chen, Xiangchun Li
2022 J jnl
Functional network properties derived from wide-field calcium imaging differ with wakefulness and across cell type.
NeuroImage
David O'Connor, Francesca Mandino, Xilin Shen, Corey Horien, X. Ge, Peter Herman, Fahmeed Hyder, M. Crair, Xenophon Papademetris, EMR Lake, R. Todd Constable
2022 J jnl
Scalable batch-correction approach for integrating large-scale single-cell transcriptomes.
Briefings Bioinform.
Xilin Shen, Hongru Shen, Dan Wu, Mengyao Feng, Jiani Hu, Jilei Liu, Yichen Yang, Meng Yang, Yang Li, Lei Shi, Kexin Chen, Xiangchun Li
2021 J jnl
Functional Connectivity during Encoding Predicts Individual Differences in Long-Term Memory.
J. Cogn. Neurosci.
Qi Lin, Kwangsun Yoo, Xilin Shen, Robert Todd Constable, Marvin M. Chun
2020 J jnl
There is no single functional atlas even for a single individual: Functional parcel definitions change with task.
NeuroImage
Mehraveh Salehi, Abigail S. Greene, Amin Karbasi, Xilin Shen, Dustin Scheinost, R. Todd Constable
2019 — conf
Combining Multiple Behavioral Measures and Multiple Connectomes via Multipath Canonical Correlation Analysis.
MICCAI (3)
Siyuan Gao, Xilin Shen, R. Todd Constable, Dustin Scheinost
2019 J jnl
Ten simple rules for predictive modeling of individual differences in neuroimaging.
NeuroImage
Dustin Scheinost, Stephanie Noble, Corey Horien, Abigail S. Greene, Evelyn M. R. Lake, Mehraveh Salehi, Siyuan Gao, Xilin Shen, David O'Connor, Daniel S. Barron, Sarah W. Yip, Monica D. Rosenberg, R. Todd Constable
2019 J jnl
The individual functional connectome is unique and stable over months to years.
NeuroImage
Corey Horien, Xilin Shen, Dustin Scheinost, R. Todd Constable
2018 J jnl
An exemplar-based approach to individualized parcellation reveals the need for sex specific functional networks.
NeuroImage
Mehraveh Salehi, Amin Karbasi, Xilin Shen, Dustin Scheinost, R. Todd Constable
2018 J jnl
Considering factors affecting the connectome-based identification process: Comment on Waller et al.
NeuroImage
Corey Horien, Stephanie Noble, Emily S. Finn, Xilin Shen, Dustin Scheinost, R. Todd Constable
2017 J jnl
Can brain state be manipulated to emphasize individual differences in functional connectivity?
NeuroImage
Emily S. Finn, Dustin Scheinost, Daniel M. Finn, Xilin Shen, Xenophon Papademetris, R. Todd Constable
2017 J jnl
Multisite reliability of MR-based functional connectivity.
NeuroImage
Stephanie Noble, Dustin Scheinost, Emily S. Finn, Xilin Shen, Xenophon Papademetris, Sarah C. McEwen, Carrie E. Bearden, Jean Addington, Bradley G. Goodyear, Kristin S. Cadenhead, Heline Mirzakhanian, Barbara A. Cornblatt, Doreen M. Olvet, Daniel H. Mathalon, Thomas H. McGlashan, Diana O. Perkins, Aysenil Belger, Larry J. Seidman, Heidi W. Thermenos, Ming T. Tsuang, Theo G. M. van Erp
2016 J jnl
Fluctuations in Global Brain Activity Are Associated With Changes in Whole-Brain Connectivity of Functional Networks.
IEEE Trans. Biomed. Eng.
Dustin Scheinost, Fuyuze Tokoglu, Xilin Shen, Emily S. Finn, Stephanie Noble, Xenophon Papademetris, R. Todd Constable
2015 J jnl
The (in)stability of functional brain network measures across thresholds.
NeuroImage
Kathleen A. Garrison, Dustin Scheinost, Emily S. Finn, Xilin Shen, R. Todd Constable
2013 — conf
Coupled Intrinsic Connectivity: A Principled Method for Exploratory Analysis of Paired Data.
CDMRI/MMBC@MICCAI
Dustin Scheinost, Xilin Shen, Emily S. Finn, Rajita Sinha, R. Todd Constable, Xenophon Papademetris
2013 J jnl
Groupwise whole-brain parcellation from resting-state fMRI data for network node identification.
NeuroImage
Xilin Shen, Fuyuze Tokoglu, Xenios Papademetris, R. Todd Constable
2012 J jnl
Perturbation of the Eigenvectors of the Graph Laplacian: Application to Image Denoising
CoRR
François G. Meyer, Xilin Shen
2011 J jnl
A whole-brain voxel based measure of intrinsic connectivity contrast reveals local changes in tissue connectivity with anesthetic without a priori assumptions on thresholds or regions of interest.
NeuroImage
Roberto Martuzzi, Ramachandran Ramani, MaoLin Qiu, Xilin Shen, Xenophon Papademetris, R. Todd Constable
2010 J jnl
Graph-theory based parcellation of functional subunits in the brain from resting-state fMRI data.
NeuroImage
Xilin Shen, Xenophon Papademetris, R. Todd Constable
2008 J jnl
Classification of fMRI Time Series in a Low-Dimensional Subspace With a Spatial Prior.
IEEE Trans. Medical Imaging
François G. Meyer, Xilin Shen
2008 J jnl
Detection and Segmentation of Concealed Objects in Terahertz Images.
IEEE Trans. Image Process.
Xilin Shen, Charles R. Dietlein, Erich Grossman, Zoya Popovic, François G. Meyer
2008 J jnl
Low-dimensional embedding of fMRI datasets.
NeuroImage
Xilin Shen, François G. Meyer
2006 — conf
Nonlinear Dimension Reduction and Activation Detection for fMRI Dataset.
CVPR Workshops
Xilin Shen, François G. Meyer
2005 — conf
Analysis of Event-Related fMRI Data Using Diffusion Maps.
IPMI
Xilin Shen, François G. Meyer
2004 — conf
Multiscale Analysis of fMRI Data with Mixture of Gaussian Densities.
ISBI
François G. Meyer, Xilin Shen