Xiaoyan Zhu

70 papers A* 6A 1C 1Journal 49Unranked 13
YearRankTypeTitle / Venue / Authors
2026 J jnl
Do Papers Match Code? A Benchmark and Framework for Paper-Code Consistency Detection in Bioinformatics Software.
CoRR
Tianxiang Xu, Xiaoyan Zhu, Xin Lai, Sizhe Dang, Xin Lian, Hangyu Cheng, Jiayin Wang
2026 A* conf
Making Every Head Count: Sparse Attention Without the Speed-Performance Trade-off.
AAAI
Mingkuan Zhao, Wentao Hu, Jiayin Wang, Xin Lai, Tianchen Huang, Yuheng Min, Rui Yan, Xiaoyan Zhu
2026 A* conf
Mosaic Pruning: A Hierarchical Framework for Generalizable Pruning of Mixture-of-Experts Models.
AAAI
Wentao Hu, Mingkuan Zhao, Shuangyong Song, Xiaoyan Zhu, Xin Lai, Jiayin Wang
2026 J jnl
PScnv: personalized self-normalizing CNV detection with a hierarchical multi-phase framework.
Bioinform.
Xuwen Wang, Zhili Chang, Wansheng Lv, Akhatov Akmal, Xamidov Munis, Xunbiao Liu, Shenjie Wang, Xiaoyan Zhu, Chong Du, Shuqun Zhang, Jiayin Wang
2026 J jnl
Reaching Software Quality for Bioinformatics Applications: How Far Are We?
IEEE Trans. Software Eng.
Xiaoyan Zhu, Tianxiang Xu, Xin Lai, Xin Lian, Hangyu Cheng, Jiayin Wang
2026 J jnl
UF-CDDFM: A unified framework for code defect detection using multi-modal inputs and few-shot learning.
Inf. Softw. Technol.
Xianglu Zhou, Tianxiang Cui, Xiaoyan Zhu, Jiayin Wang, Xin Lai
2025 C conf
Cross-Project Defect Prediction Based on Feature Fusion and Local Domain Adaptation.
APSEC
Xianglu Zhou, Xiaoyan Zhu, Yu Wang, Jiayin Wang, Xin Lai
2025 J jnl
EMcnv: enhancing CNV detection performance through ensemble strategies with heterogeneous meta-graph neural networks.
Briefings Bioinform.
Xuwen Wang, Zhili Chang, Yuqian Liu, Shenjie Wang, Xiaoyan Zhu, Yang Shao, Jiayin Wang
2025 — conf
Efficient Integration of ASR with Large Language Models to Enhance Video Search at Scale.
WWW (Companion Volume)
Qiang Zhang, Fengshun Xiao, Tianjiao Li, Li Lin, Hanyin Fang, Huyang Sun, Ruoyu Liu, Xiaoyan Zhu, Jiayin Wang
2025 J jnl
Learning multi-behavior user intent for session-based recommendation.
Expert Syst. Appl.
Yu Zhang, Xiaoyan Zhu, Guopeng He, Jiaxuan Li, Jiayin Wang
2025 J jnl
MRDadaptis: self-adaptive parameter configuration enhances minimal residual disease detection in heterogeneous ctDNA samples.
Briefings Bioinform.
Tianci Wang, Xin Lai, Shenjie Wang, Zhengfa Xue, Yuqian Liu, Xiaoyan Zhu, Xiaonan Wang, Zhili Chang, Yang Shao, Xian Zhang, Jiayin Wang
2025 J jnl
MRDagent: iterative and adaptive parameter optimization for stable ctDNA-based MRD detection in heterogeneous samples.
Bioinform.
Tianci Wang, Xin Lai, Shenjie Wang, Yuqian Liu, Xiaoyan Zhu, Jiayin Wang
2025 J jnl
MRDtarget: A heuristic Gaussian approach for optimizing targeted capture regions to enhance Minimal Residual Disease detection.
PLoS Comput. Biol.
Xuwen Wang, Yanfang Guan, Wei Gao, Xin Lai, Wuqiang Cao, Xiaoyan Zhu, Xiaoling Zeng, Yuqian Liu, Shenjie Wang, Ruoyu Liu, Xin Yi, Shuanying Yang, Jiayin Wang
2025 J jnl
Making Every Head Count: Sparse Attention Without the Speed-Performance Trade-off.
CoRR
Mingkuan Zhao, Wentao Hu, Jiayin Wang, Xin Lai, Tianchen Huang, Yuheng Min, Rui Yan, Xiaoyan Zhu
2025 J jnl
Mosaic Pruning: A Hierarchical Framework for Generalizable Pruning of Mixture-of-Experts Models.
CoRR
Wentao Hu, Mingkuan Zhao, Shuangyong Song, Xiaoyan Zhu, Xin Lai, Jiayin Wang
2025 A* conf
Multi-Label Ranking Loss Minimization for Matrix Completion.
AAAI
Jiaxuan Li, Xiaoyan Zhu, Hongrui Wang, Yu Zhang, Xin Lai, Jiayin Wang
2025 J jnl
TMBclaw: tumor clone-aware graph learning improves immunotherapy response prediction across heterogeneous cohorts.
Briefings Bioinform.
Yixuan Wang, Tianyi Zhu, Xiaofeng Song, Peng Chen, Xiaoyan Zhu, Zhili Chang, Xiaonan Wang, Xin Lai, Jiayin Wang
2025 J jnl
TMBquant: an explainable AI-powered caller advancing tumor mutation burden quantification across heterogeneous samples.
Briefings Bioinform.
Shenjie Wang, Xiaonan Wang, Xiaoyan Zhu, Xuwen Wang, Yuqian Liu, Minchao Zhao, Zhili Chang, Yang Shao, Haitao Zhang, Shuanying Yang, Jiayin Wang
2024 J jnl
A novel instance-based method for cross-project just-in-time defect prediction.
Softw. Pract. Exp.
Xiaoyan Zhu, Tian Qiu, Jiayin Wang, Xin Lai
2024 J jnl
A ranking-based problem transformation method for weakly supervised multi-label learning.
Pattern Recognit.
Jiaxuan Li, Xiaoyan Zhu, Weichu Zhang, Jiayin Wang
2024 J jnl
A risk-adjusted exponentially weighted moving average control chart for detection of the scale parameter in surgical quality monitoring.
Qual. Reliab. Eng. Int.
Xin Lai, Xiao Li, Liu Liu, Jiayin Wang, Xuanping Zhang, Xiaoyan Zhu, Paul B. S. Lai
2024 — conf
An Enhanced Multiple Correction Method with Limited Independent Effective SNPs.
BIBM
Xin Lai, Xiaohai Yang, Jiayin Wang, Xiaoyan Zhu, Yuqian Liu, Ruoyu Liu, Xuwen Wang, Shenjie Wang
2024 J jnl
Classifier chain-based monitoring method for multivariate surgical outcomes.
Comput. Ind. Eng.
Xin Lai, Xin Lian, Jiayin Wang, Liu Liu, Xuanping Zhang, Xiaoyan Zhu, Yuqian Liu, Xin Chen, Paul B. S. Lai
2024 — conf
Correction of Read Biases Induced by Complex Reference Genome Regions for Improving Copy Number Variation Detection Using a Gaussian Mixture Model.
BIBM
Xuwen Wang, Zhili Chang, Shenjie Wang, Ruoyu Liu, Yuqian Liu, Xiaoyan Zhu, Yang Shao, Xin Lai, Shuanying Yang, Jiayin Wang
2024 J jnl
Dual-channel graph contrastive learning for multi-label classification with label-specific features and label correlations.
Neural Comput. Appl.
Xiaoyan Zhu, Tong Zhu, Jiaxuan Li, Jiayin Wang
2024 — conf
Enabling Adaptive CNV Detection through A Novel Predictive Control Framework.
BIBM
Yuqian Liu, Jiajing Yuan, Xiaoyan Zhu, Xin Lai, Ruoyu Liu, Xuwen Wang, Jiayin Wang
2024 J jnl
Graph-enhanced and collaborative attention networks for session-based recommendation.
Knowl. Based Syst.
Xiaoyan Zhu, Yu Zhang, Jiayin Wang, Guangtao Wang
2024 — conf
LMR-EWMA: A LASSO-based Multivariate Residual Control Chart for Monitoring Rare Health-Related Events.
BIBM
Ruoyu Liu, Jiayin Wang, Xiaoyan Zhu, Yuqian Liu, Yixuan Wang, Shuanying Yang, Xin Lai
2024 — conf
Label-Specific Multi-label Classification with Entropy Guided Clustering.
ICPR (2)
Jiaxuan Li, Tong Zhu, Xiaoyan Zhu, Jiayin Wang
2024 — conf
Multi-Objective Policy Monitoring Method for Epidemic Control.
BIBM
Xin Lai, Rundong Fan, Ruoyu Liu, Jiayin Wang, Xiaoyan Zhu, Yuqian Liu, Xuwen Wang, Shenjie Wang
2024 J jnl
NIPT-PG: empowering non-invasive prenatal testing to learn from population genomics through an incremental pan-genomic approach.
Briefings Bioinform.
Zhengfa Xue, Aifen Zhou, Xiaoyan Zhu, Linxuan Li, Huanhuan Zhu, Xin Jin, Jiayin Wang
2024 — conf
RMComBat: A Batch Effect Correction Algorithm for Repeated Measurement Sequencing Data to Prevent Overcorrection.
BIBM
Yuqian Liu, Zhaoxing Wei, Jiayin Wang, Xiaoyan Zhu, Ruoyu Liu, Xuwen Wang, Shenjie Wang, Xin Lai
2024 J jnl
Stacked co-training for semi-supervised multi-label learning.
Inf. Sci.
Jiaxuan Li, Xiaoyan Zhu, Hongrui Wang, Yu Zhang, Jiayin Wang
2024 J jnl
TCSR: Self-attention with time and category for session-based recommendation.
Comput. Intell.
Xiaoyan Zhu, Yu Zhang, Jiaxuan Li, Jiayin Wang, Xin Lai
2024 J jnl
TMBstable: a variant caller controls performance variation across heterogeneous sequencing samples.
Briefings Bioinform.
Shenjie Wang, Xiaoyan Zhu, Xuwen Wang, Yuqian Liu, Minchao Zhao, Zhili Chang, Xiaonan Wang, Yang Shao, Jiayin Wang
2023 A* conf
AdaBoost.C2: Boosting Classifiers Chains for Multi-Label Classification.
AAAI
Jiaxuan Li, Xiaoyan Zhu, Jiayin Wang
2023 J jnl
Automated machine learning with dynamic ensemble selection.
Appl. Intell.
Xiaoyan Zhu, Jingtao Ren, Jiayin Wang, Jiaxuan Li
2023 J jnl
Dynamic ensemble learning for multi-label classification.
Inf. Sci.
Xiaoyan Zhu, Jiaxuan Li, Jingtao Ren, Jiayin Wang, Guangtao Wang
2023 J jnl
SCR-CUSUM: An illness-death semi-Markov model-based risk-adjusted CUSUM for semi-competing risk data monitoring.
Comput. Ind. Eng.
Ruoyu Liu, Xin Lai, Jiayin Wang, Xiaoyan Zhu, Yuqian Liu
2022 J jnl
Just-in-time defect prediction for software hunks.
Softw. Pract. Exp.
Xiaoyan Zhu, Chenyu Yan, E. James Whitehead Jr., Binbin Niu, Lei Zhu, Long Pan
2022 J jnl
Residuals based EWMA control charts with risk adjustments for zero-inflated Poisson models.
Qual. Reliab. Eng. Int.
Xin Lai, Ruoyu Liu, Liu Liu, Jiayin Wang, Xuanping Zhang, Xiaoyan Zhu, Ka Chun Chong
2021 A* conf
A new multiple instance algorithm using structural information.
ICDM
Xiaoyan Zhu, Ting Wang, Jiayin Wang, Ying Xu, Yuqian Liu
2021 J jnl
A non-linear ensemble model-based surgical risk calculator for mixed data from multiple surgical fields.
BMC Medical Informatics Decis. Mak.
Ruoyu Liu, Xin Lai, Jiayin Wang, Xuanping Zhang, Xiaoyan Zhu, Paul B. S. Lai, Ci-ren Guo
2021 J jnl
A risk-adjusted approach to monitoring surgery for survival outcomes based on a weighted score test.
Comput. Ind. Eng.
Xin Lai, Xiao Li, Liu Liu, Fugee Tsung, Paul B. S. Lai, Jiayin Wang, Xuanping Zhang, Xiaoyan Zhu, Jiaqi Liu
2021 J jnl
Automatic Recommendation of a Distance Measure for Clustering Algorithms.
ACM Trans. Knowl. Discov. Data
Xiaoyan Zhu, Yingbin Li, Jiayin Wang, Tian Zheng, Jingwen Fu
2021 — conf
Chinese named entity recognition method for the field of network security based on RoBERTa.
NaNA
Xiaoyan Zhu, Yu Zhang, Lei Zhu, Xinhong Hei, Yichuan Wang, Feixiong Hu, Yanni Yao
2021 J jnl
Ensemble of ML-KNN for classification algorithm recommendation.
Knowl. Based Syst.
Xiaoyan Zhu, Chenzhen Ying, Jiayin Wang, Jiaxuan Li, Xin Lai, Guangtao Wang
2021 J jnl
Risk-adjusted zero-inflated Poisson CUSUM charts for monitoring influenza surveillance data.
BMC Medical Informatics Decis. Mak.
Yueying Tan, Xin Lai, Jiayin Wang, Xuanping Zhang, Xiaoyan Zhu, Ka Chun Chong, Paul K. S. Chan, Jing Tang
2020 J jnl
A hybrid correcting method considering heterozygous variations by a comprehensive probabilistic model.
BMC Genom.
Jiaqi Liu, Jiayin Wang, Xiao Xiao, Xin Lai, Daocheng Dai, Xuanping Zhang, Xiaoyan Zhu, Zhongmeng Zhao, Juan Wang, Zhimin Li
2020 J jnl
A prognostic index based on a fourteen long non-coding RNA signature to predict the recurrence-free survival for muscle-invasive bladder cancer patients.
BMC Medical Informatics Decis. Mak.
Xiaolong Zhang, Meng Zhang, Xuanping Zhang, Xiaoyan Zhu, Jiayin Wang
2020 J jnl
Collaborative filtering based recommendation of sampling methods for software defect prediction.
Appl. Soft Comput.
Zhongbin Sun, Jingqi Zhang, Heli Sun, Xiaoyan Zhu
2020 J jnl
SETE: Sequence-based Ensemble learning approach for TCR Epitope binding prediction.
Comput. Biol. Chem.
Yao Tong, Jiayin Wang, Tian Zheng, Xuanping Zhang, Xiao Xiao, Xiaoyan Zhu, Xin Lai, Xiang Liu
2019 J jnl
A new unsupervised feature selection algorithm using similarity-based feature clustering.
Comput. Intell.
Xiaoyan Zhu, Yu Wang, Yingbin Li, Yonghui Tan, Guangtao Wang, Qinbao Song
2019 — conf
An Artificial Fish Swarm Algorithm for Identifying Associations between Multiple Variants and Multiple Phenotypes.
BIBM
Ruoyu Liu, Xin Lai, Xiao Xiao, Xuanping Zhang, Xiaoyan Zhu, Jiayin Wang
2019 — conf
FilterLAP: Filtering False-positive Mutation Calls via a Label Propagation Framework.
BIBM
Xuwen Wang, Xiaoyan Zhu, Xiao Xiao, Shenjie Wang, Xuanping Zhang, Xin Lai, Jiayin Wang
2019 — conf
GSDcreator: An Efficient and Comprehensive Simulator for Genarating NGS Data with Population Genetic Information.
BIBM
Shenjie Wang, Jiayin Wang, Xiao Xiao, Xuanping Zhang, Xuwen Wang, Xiaoyan Zhu, Xin Lai
2019 J jnl
Recognition Of Surface Defects On Steel Sheet Using Transfer Learning.
CoRR
Jingwen Fu, Xiaoyan Zhu, Yingbin Li
2018 J jnl
A new classification algorithm recommendation method based on link prediction.
Knowl. Based Syst.
Xiaoyan Zhu, Xiaomei Yang, Chenzhen Ying, Guangtao Wang
2018 J jnl
An empirical study of software change classification with imbalance data-handling methods.
Softw. Pract. Exp.
Xiaoyan Zhu, Binbin Niu, E. James Whitehead Jr., Zhongbin Sun
2018 J jnl
Software change-proneness prediction through combination of bagging and resampling methods.
J. Softw. Evol. Process.
Xiaoyan Zhu, Yueyang He, Long Cheng, Xiaolin Jia, Lei Zhu
2017 — conf
Efficient (k, n) Secret Sharing Scheme Secure against k - 2 Cheaters.
NaNA
Lei Zhu, Yanxiao Liu, Yichuan Wang, Wenjiang Ji, Xinhong Hei, Quanzhu Yao, Xiaoyan Zhu
2016 J jnl
A machine learning based software process model recommendation method.
J. Syst. Softw.
Qinbao Song, Xiaoyan Zhu, Guangtao Wang, Heli Sun, He Jiang, Chenhao Xue, Baowen Xu, Wei Song
2015 J jnl
A Selective Detector Ensemble for Concept Drift Detection.
Comput. J.
Lei Du, Qinbao Song, Lei Zhu, Xiaoyan Zhu
2015 J jnl
A novel ensemble method for classifying imbalanced data.
Pattern Recognit.
Zhongbin Sun, Qinbao Song, Xiaoyan Zhu, Heli Sun, Baowen Xu, Yuming Zhou
2015 J jnl
An analysis of programming language statement frequency in C, C++, and Java source code.
Softw. Pract. Exp.
Xiaoyan Zhu, E. James Whitehead Jr., Caitlin Sadowski, Qinbao Song
2013 J jnl
Automated Identification of Change-Prone Classes in Open Source Software Projects.
J. Softw.
Xiaoyan Zhu, Qinbao Song, Zhongbin Sun
2013 A* conf
Does bug prediction support human developers? findings from a google case study.
ICSE
Chris Lewis, Zhongpeng Lin, Caitlin Sadowski, Xiaoyan Zhu, Rong Ou, E. James Whitehead Jr.
2012 J jnl
An Empirical Analysis of Software Changes on Statement Entity in Java Open Source Projects.
Int. J. Open Source Softw. Process.
Xiaoyan Zhu, Qinbao Song, Zhongbin Sun
2012 J jnl
Using Coding-Based Ensemble Learning to Improve Software Defect Prediction.
IEEE Trans. Syst. Man Cybern. Part C
Zhongbin Sun, Qinbao Song, Xiaoyan Zhu
2011 A conf
An empirical analysis of the FixCache algorithm.
MSR
Caitlin Sadowski, Chris Lewis, Zhongpeng Lin, Xiaoyan Zhu, E. James Whitehead Jr.