Xiaowo Wang

35 papers B 1Journal 33Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Advancing genetic engineering with active learning: theory, implementations and potential opportunities.
Briefings Bioinform.
Qixiu Du, Haochen Wang, Benben Jiang, Xiaowo Wang
2025 J jnl
Deconer: An Evaluation Toolkit for Reference-based Deconvolution Methods Using Gene Expression Data.
Genom. Proteom. Bioinform.
Wei Zhang, Xianglin Zhang, Qiao Liu, Lei Wei, Xu Qiao, Rui Gao, Zhiping Liu, Xiaowo Wang
2025 J jnl
Interpretable Clustering with Adaptive Heterogeneous Causal Structure Learning in Mixed Observational Data.
CoRR
Wenrui Li, Qinghao Zhang, Xiaowo Wang
2025 J jnl
Non-Contact Dexterous Micromanipulation With Multiple Optoelectronic Robots.
IEEE Robotics Autom. Lett.
Yongyi Jia, Shu Miao, Ao Wang, Caiding Ni, Lin Feng, Xiaowo Wang, Xiang Li
2025 J jnl
Simulation-guided pan-cancer analysis identifies a novel regulator of CpG island hypermethylation heterogeneity.
Briefings Bioinform.
Xianglin Zhang, Wei Zhang, Jinyi Zhang, Xiuhong Lyu, Haoran Pan, Tianwei Jia, Ting Wang, Xiaowo Wang, Haiyang Guo
2025 J jnl
esMPRA: an easy-to-use systematic pipeline for MPRA experiment quality control and data analysis.
Bioinform.
Jiaqi Li, Pengcheng Zhang, Xi Xi, Xiaowo Wang
2024 B conf
Discovering and Overcoming the Bias in Neoantigen Identification by Unified Machine Learning Models.
RECOMB
Ziting Zhang, Wenxu Wu, Lei Wei, Xiaowo Wang
2024 J jnl
GPro: generative AI-empowered toolkit for promoter design.
Bioinform.
Haochen Wang, Qixiu Du, Ye Wang, Hanwen Xu, Zheng Wei, Xiaowo Wang
2024 J jnl
Non-contact Dexterous Micromanipulation with Multiple Optoelectronic Robots.
CoRR
Yongyi Jia, Shu Miao, Ao Wang, Caiding Ni, Lin Feng, Xiaowo Wang, Xiang Li
2024 J jnl
Unveil
Bioinform.
Xiaocheng Zeng, Zheng Wei, Qixiu Du, Jiaqi Li, Zhen Xie, Xiaowo Wang
2024 J jnl
Weakly Supervised Causal Discovery Based on Fuzzy Knowledge and Complex Data Complementarity.
IEEE Trans. Fuzzy Syst.
Wenrui Li, Wei Zhang, Qinghao Zhang, Xuegong Zhang, Xiaowo Wang
2024 J jnl
Weakly-supervised causal discovery based on fuzzy knowledge and complex data complementarity.
CoRR
Wenrui Li, Wei Zhang, Qinghao Zhang, Xuegong Zhang, Xiaowo Wang
2023 J jnl
Building digital life systems for future biology and medicine.
Quant. Biol.
Xuegong Zhang, Lei Wei, Rui Jiang, Xiaowo Wang, Jin Gu, Zhen Xie, Hairong Lv
2022 J jnl
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data.
Briefings Bioinform.
Wei Zhang, Hanwen Xu, Rong Qiao, Bixi Zhong, Xianglin Zhang, Jin Gu, Xuegong Zhang, Lei Wei, Xiaowo Wang
2022 J jnl
Correction to: DeSP: a systematic DNA storage error simulation pipeline.
BMC Bioinform.
Lekang Yuan, Zhen Xie, Ye Wang, Xiaowo Wang
2022 J jnl
DeSP: a systematic DNA storage error simulation pipeline.
BMC Bioinform.
Lekang Yuan, Zhen Xie, Ye Wang, Xiaowo Wang
2022 J jnl
Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA.
Briefings Bioinform.
Xianglin Zhang, Xiaodong Jia, Bixi Zhong, Lei Wei, Jiaqi Li, Wei Zhang, Huan Fang, Yanda Li, Yinying Lu, Xiaowo Wang
2022 J jnl
MeConcord: a new metric to quantitatively characterize DNA methylation heterogeneity across reads and CpG sites.
Bioinform.
Xianglin Zhang, Xiaowo Wang
2021 J jnl
CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images.
Bioinform.
Tao Hu, Shixiong Xu, Lei Wei, Xuegong Zhang, Xiaowo Wang
2021 J jnl
DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads.
Briefings Bioinform.
Jiaqi Li, Lei Wei, Xianglin Zhang, Wei Zhang, Haochen Wang, Bixi Zhong, Zhen Xie, Hairong Lv, Xiaowo Wang
2021 J jnl
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions.
Nucleic Acids Res.
Shengquan Chen, Qiao Liu, Xuejian Cui, Zhan-Ying Feng, Chunquan Li, Xiaowo Wang, Xuegong Zhang, Yong Wang, Rui Jiang
2021 J jnl
Single-cell Transcriptomes Reveal Characteristics of MicroRNAs in Gene Expression Noise Reduction.
Genom. Proteom. Bioinform.
Tao Hu, Lei Wei, Shuailin Li, Tianrun Cheng, Xuegong Zhang, Xiaowo Wang
2021 J jnl
cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data.
Bioinform.
Wei Zhang, Lei Wei, Jiaqi Huang, Bixi Zhong, Jiaqi Li, Hanwen Xu, Shuying He, Yu Liu, Juhong Liu, Hairong Lv, Xiaowo Wang
2019 J jnl
Regulation by competition: a hidden layer of gene regulatory network.
Quant. Biol.
Lei Wei, Ye Yuan, Tao Hu, Shuailin Li, Tianrun Cheng, Jinzhi Lei, Zhen Xie, Michael Q. Zhang, Xiaowo Wang
2018 J jnl
DEsingle for detecting three types of differential expression in single-cell RNA-seq data.
Bioinform.
Zhun Miao, Ke Deng, Xiaowo Wang, Xuegong Zhang
2018 J jnl
esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis.
Bioinform.
Zheng Wei, Wei Zhang, Huan Fang, Yanda Li, Xiaowo Wang
2017 — conf
Regulation by competing: A hidden layer of gene regulatory networks.
CASE
Xiaowo Wang
2016 J jnl
A quantitative understanding of microRNA-mediated competing endogenous RNA regulation.
Quant. Biol.
Ye Yuan, Xinying Ren, Zhen Xie, Xiaowo Wang
2016 J jnl
Advances in computational ChIA-PET data analysis.
Quant. Biol.
Chao He, Guipeng Li, Mohamed Nadhir Djekidel, Yang Chen, Xiaowo Wang, Michael Q. Zhang
2015 J jnl
CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation.
Bioinform.
Honglei Liu, Zheng Wei, Antonia Dominguez, Yanda Li, Xiaowo Wang, Lei S. Qi
2015 J jnl
MICC: an R package for identifying chromatin interactions from ChIA-PET data.
Bioinform.
Chao He, Michael Q. Zhang, Xiaowo Wang
2014 J jnl
OP-Synthetic: identification of optimal genetic manipulations for the overproduction of native and non-native metabolites.
Quant. Biol.
Honglei Liu, Yanda Li, Xiaowo Wang
2010 J jnl
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data.
Bioinform.
Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xuegong Zhang
2008 J jnl
Identification of phylogenetically conserved microRNA
Bioinform.
Xiaowo Wang, Jin Gu, Michael Q. Zhang, Yanda Li
2005 J jnl
MicroRNA identification based on sequence and structure alignment.
Bioinform.
Xiaowo Wang, Jing Zhang, Fei Li, Jin Gu, Tao He, Xuegong Zhang, Yanda Li