Xiaowei Zhan

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2026 J jnl
Deep reflective reasoning in interdependence constrained structured data extraction from clinical notes for digital health.
CoRR
Jingwei Huang, Kuroush Nezafati, Zhikai Chi, Ruichen Rong, Colin Treager, Tingyi Wanyan, Yueshuang Xu, Xiaowei Zhan, Patrick Leavey, Guanghua Xiao, Wenqi Shi, Yang Xie
2026 J jnl
GNN-EGG: Graph neural network explanations via graph generation.
Neurocomputing
Art Taychameekiatchai, Liwei Jia, Zhikai Chi, Yueshuang Xu, Qin Zhou, Guanghua Xiao, Xiaowei Zhan
2025 J jnl
A Generalized Genetic Random Field Method for the Genetic Association Analysis of Sequencing Data.
CoRR
Ming Li, Zihuai He, Min Zhang, Xiaowei Zhan, Changshuai Wei, Robert C. Elston, Qing Lu
2025 J jnl
MiCoDe: a web tool for performing microbiome community detection using a Bayesian weighted stochastic block model.
Bioinform.
Kevin C. Lutz, Shengjie Yang, Tejasv Bedi, Michael L. Neugent, Nikita Madhavaram, Bo Yao, Xiaowei Zhan, Nicole J. De Nisco, Qiwei Li
2024 J jnl
A critical assessment of using ChatGPT for extracting structured data from clinical notes.
npj Digit. Medicine
Jingwei Huang, Donghan M. Yang, Ruichen Rong, Kuroush Nezafati, Colin Treager, Zhikai Chi, Shidan Wang, Xian Cheng, Yujia Guo, Laura J. Klesse, Guanghua Xiao, Eric D. Peterson, Xiaowei Zhan, Yang Xie
2024 J jnl
Large language models enabled multiagent ensemble method for efficient EHR data labeling.
CoRR
Jingwei Huang, Kuroush Nezafati, Ismael Villanueva-Miranda, Zifan Gu, Ann Marie Navar, Tingyi Wanyan, Qin Zhou, Bo Yao, Ruichen Rong, Xiaowei Zhan, Guanghua Xiao, Eric D. Peterson, Donghan M. Yang, Yang Xie
2024 J jnl
Navigating electronic health record accuracy by examination of sex incongruent conditions.
J. Am. Medical Informatics Assoc.
Ling Cai, Ralph J. Deberardinis, Xiaowei Zhan, Guanghua Xiao, Yang Xie
2023 J jnl
Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach.
Comput. Methods Programs Biomed.
Shidan Wang, Ruichen Rong, Zifan Gu, Junya Fujimoto, Xiaowei Zhan, Yang Xie, Guanghua Xiao
2022 J jnl
A Survey of Statistical Methods for Microbiome Data Analysis.
Frontiers Appl. Math. Stat.
Kevin C. Lutz, Shuang Jiang, Michael L. Neugent, Nicole J. De Nisco, Xiaowei Zhan, Qiwei Li
2021 J jnl
Spatial molecular profiling: platforms, applications and analysis tools.
Briefings Bioinform.
Minzhe Zhang, Thomas Sheffield, Xiaowei Zhan, Qiwei Li, Donghan M. Yang, Yunguan Wang, Shidan Wang, Yang Xie, Tao Wang, Guanghua Xiao
2020 J jnl
Seqminer2: an efficient tool to query and retrieve genotypes for statistical genetics analyses from biobank scale sequence dataset.
Bioinform.
Lina Yang, Shuang Jiang, Bibo Jiang, Dajiang J. Liu, Xiaowei Zhan
2020 J jnl
VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning.
PLoS Comput. Biol.
Jiwoong Kim, David E. Greenberg, Reed Pifer, Shuang Jiang, Guanghua Xiao, Samuel A. Shelburne, Andrew Y. Koh, Yang Xie, Xiaowei Zhan
2019 J jnl
DEFOR: depth- and frequency-based somatic copy number alteration detector.
Bioinform.
He Zhang, Xiaowei Zhan, James Brugarolas, Yang Xie
2016 J jnl
FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies.
BMC Bioinform.
Jiwoong Kim, Min Soo Kim, Andrew Y. Koh, Yang Xie, Xiaowei Zhan
2016 J jnl
RVTESTS: an efficient and comprehensive tool for rare variant association analysis using sequence data.
Bioinform.
Xiaowei Zhan, Youna Hu, Bingshan Li, Gonçalo R. Abecasis, Dajiang J. Liu
2015 J jnl
A Bayesian framework for
Bioinform.
Qiang Wei, Xiaowei Zhan, Xue Zhong, Yongzhuang Liu, Yujun Han, Wei Chen, Bingshan Li
2015 J jnl
A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis.
Bioinform.
Rui Chen, Qiang Wei, Xiaowei Zhan, Xue Zhong, James S. Sutcliffe, Nancy J. Cox, Edwin H. Cook Jr., Chun Li, Wei Chen, Bingshan Li
2014 J jnl
RAREMETAL: fast and powerful meta-analysis for rare variants.
Bioinform.
Shuang Feng, Dajiang Liu, Xiaowei Zhan, Mary Kate Wing, Gonçalo R. Abecasis