Xiaoqiu Huang

34 papers B 2C 2Misc 1Journal 17Unranked 12
YearRankTypeTitle / Venue / Authors
2022 — conf
Scalable and Extensible Robinson-Foulds for Comparative Phylogenetics.
IPDPS Workshops
Alvin Chon, Pawel Górecki, Oliver Eulenstein, Xiaoqiu Huang, Ali Jannesari
2017 J jnl
NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequences.
BMC Bioinform.
Philip L. Tzou, Xiaoqiu Huang, Robert W. Shafer
2011 J jnl
Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution Matrices.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ankit Agrawal, Xiaoqiu Huang
2010 — conf
Derived distribution points heuristic for fast pairwise statistical significance estimation.
BCB
Ankit Agrawal, Alok N. Choudhary, Xiaoqiu Huang
2010 — conf
Non-Conservative Pairwise Statistical Significance of Local Sequence Alignment Using Position-Specific Substitution Matrices.
BIOCOMP
Ankit Agrawal, Alok N. Choudhary, Xiaoqiu Huang
2009 J jnl
Maximum Similarity: A New Formulation of Phylogenetic Reconstruction.
J. Comput. Biol.
Xiaoqiu Huang, Martin Vingron
2009 J jnl
PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance.
Bioinform.
Ankit Agrawal, Xiaoqiu Huang
2009 J jnl
Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty.
BMC Bioinform.
Ankit Agrawal, Xiaoqiu Huang
2008 — conf
Conservative, Non-conservative and Average Pairwise Statistical Significance of Local Sequence Alignment.
BIBM
Ankit Agrawal, Xiaoqiu Huang
2008 — conf
DNAlignTT: Pairwise DNA alignment with sequence specific transition-transversion ratio.
EIT
Ankit Agrawal, Xiaoqiu Huang
2008 — conf
Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition.
ISBRA
Ankit Agrawal, Arka P. Ghosh, Xiaoqiu Huang
2008 — conf
Pairwise DNA Alignment with Sequence Specific Transition-Transversion Ratio Using Multiple Parameter Sets.
ICIT
Ankit Agrawal, Xiaoqiu Huang
2008 — conf
Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences.
ISBRA
Ankit Agrawal, Volker Brendel, Xiaoqiu Huang
2008 — conf
Pairwise Statistical Significance of Local Sequence Alignment Using Substitution Matrices with Sequence-Pair-Specific Distance.
ICIT
Ankit Agrawal, Xiaoqiu Huang
2008 J jnl
Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment.
Int. J. Comput. Biol. Drug Des.
Ankit Agrawal, Volker Brendel, Xiaoqiu Huang
2008 — conf
Pairwise statistical significance of local sequence alignment using multiple parameter sets.
DTMBIO
Ankit Agrawal, Xiaoqiu Huang
2008 J jnl
Sequence Alignment with an Appropriate Substitution Matrix.
J. Comput. Biol.
Xiaoqiu Huang
2005 J jnl
A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage.
BMC Bioinform.
Jianmin Wang, Xiaoqiu Huang
2004 C conf
A Sensitive Sequence Comparison Method.
SNPD
Xiaoqiu Huang, Liang Ye, I-Hsuan Yang, Kun-Mao Chao
2004 C conf
Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds.
BIBE
I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsian Huang, Liang Ye, Xiaoqiu Huang, Kun-Mao Chao
2004 J jnl
Efficient combination of multiple word models for improved sequence comparison.
Bioinform.
Xiaoqiu Huang, Liang Ye, Hui-Hsien Chou, I-Hsuan Yang, Kun-Mao Chao
2003 J jnl
A generalized global alignment algorithm.
Bioinform.
Xiaoqiu Huang, Kun-Mao Chao
2003 J jnl
MAVG: locating non-overlapping maximum average segments in a given sequence.
Bioinform.
Yaw-Ling Lin, Xiaoqiu Huang, Tao Jiang, Kun-Mao Chao
2003 J jnl
Parallel Syntenic Alignments.
Parallel Process. Lett.
Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang
2003 J jnl
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
Bioinform.
Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush
2002 Misc conf
Parallel Syntenic Alignments.
HiPC
Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang
1998 — conf
Performance of the CAP2 sequence assembly program.
Mathematical Support for Molecular Biology
Xiaoqiu Huang
1994 B conf
A Context Dependent Method for Comparing Sequences.
CPM
Xiaoqiu Huang
1994 B conf
Parametric Recomuting in Alignment Graphs.
CPM
Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller
1992 J jnl
Parallelization of a local similarity algorithm.
Comput. Appl. Biosci.
Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison
1990 J jnl
A space-efficient algorithm for local similarities.
Comput. Appl. Biosci.
Xiaoqiu Huang, Ross C. Hardison, Webb Miller
1990 — conf
Computing Local Sequence Similarities on a Hypercube.
ICPP (3)
Xiaoqiu Huang
1989 J jnl
A space-efficient parallel sequence comparison algorithm for a message-passing multiprocessor.
Int. J. Parallel Program.
Xiaoqiu Huang
1988 J jnl
A Lower Bound for the Edit-Distance Problem Under an Arbitrary Cost Function.
Inf. Process. Lett.
Xiaoqiu Huang