Xiaoqi Zheng

29 papers Misc 1Journal 26Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Castl: robust identification of spatially variable genes in spatial transcriptomics via an ensemble-based framework.
Briefings Bioinform.
Yiyi Yu, Jiyuan Yang, Ping-an He, Xiaoqi Zheng
2026 J jnl
Spider: a flexible and unified framework for simulating spatial transcriptomics data.
Bioinform.
Jiyuan Yang, Nana Wei, Yang Qu, Congcong Hu, Weiwei Zhang, Lin Liu, Hua-Jun Wu, Xiaoqi Zheng
2025 Misc conf
Image-assisted Label Connective Completion for Vessel Segmentation with Insufficient Annotations.
ICASSP
Xiaoqi Zheng, Baoyao Yang, Xiuwen Fang, Wenfang Yao, Mang Ye
2024 J jnl
A novel hypergraph model for identifying and prioritizing personalized drivers in cancer.
PLoS Comput. Biol.
Naiqian Zhang, Fubin Ma, Dong Guo, Yuxuan Pang, Chenye Wang, Yusen Zhang, Xiaoqi Zheng, Mingyi Wang
2024 J jnl
BS-clock, advancing epigenetic age prediction with high-resolution DNA methylation bisulfite sequencing data.
Bioinform.
Congcong Hu, Yunxiao Li, Longhui Li, Naiqian Zhang, Xiaoqi Zheng
2024 J jnl
Embedding enhancement with foreground feature alignment and primitive knowledge for few-shot learning.
Eng. Appl. Artif. Intell.
Xiaoqi Zheng, Jia Lu
2023 J jnl
ExosomePurity: tumour purity deconvolution in serum exosomes based on miRNA signatures.
Briefings Bioinform.
Tao Wu, Yao Dai, Yue Xu, Jie Zheng, Shuting Chen, Yinuo Zhang, Peng Tian, Xiaoqi Zheng, Haiyun Wang
2023 J jnl
TRAmHap: accurate prediction of transcriptional activity from DNA methylation haplotypes in bisulfite-sequencing data.
Briefings Bioinform.
Siqi Gao, Hanwen Zhu, Kangwen Cai, Leiqin Liu, Zhiqiang Zhang, Yi Ding, Yaochen Xu, Xiaoqi Zheng, Jiantao Shi
2022 J jnl
DriverRWH: discovering cancer driver genes by random walk on a gene mutation hypergraph.
BMC Bioinform.
Chenye Wang, Junhan Shi, Jiansheng Cai, Yusen Zhang, Xiaoqi Zheng, Naiqian Zhang
2022 — conf
Purification of tumor methylomes through residual decomposition.
BIBM
Nana Wei, Yijing Zhu, Yating Nie, Shiyu Fan, Yuanchen Sun, Xiaoqi Zheng
2022 J jnl
Secuer: Ultrafast, scalable and accurate clustering of single-cell RNA-seq data.
PLoS Comput. Biol.
Nana Wei, Yating Nie, Lin Liu, Xiaoqi Zheng, Hua-Jun Wu
2022 J jnl
mHapTk: a comprehensive toolkit for the analysis of DNA methylation haplotypes.
Bioinform.
Yi Ding, Kangwen Cai, Leiqin Liu, Zhiqiang Zhang, Xiaoqi Zheng, Jiantao Shi
2021 J jnl
The DNA methylation haplotype (mHap) format and mHapTools.
Bioinform.
Zhiqiang Zhang, Yuhao Dan, Yaochen Xu, Jiarui Zhang, Xiaoqi Zheng, Jiantao Shi
2021 J jnl
TimNet: A text-image matching network integrating multi-stage feature extraction with multi-scale metrics.
Neurocomputing
Xiaoqi Zheng, Yingfan Tao, Ruikai Zhang, Wenming Yang, Qingmin Liao
2020 J jnl
A comprehensive review of computational prediction of genome-wide features.
Briefings Bioinform.
Tianlei Xu, Xiaoqi Zheng, Ben Li, Peng Jin, Zhaohui S. Qin, Hao Wu
2020 J jnl
Deconvolution of heterogeneous tumor samples using partial reference signals.
PLoS Comput. Biol.
Yufang Qin, Weiwei Zhang, Xiaoqiang Sun, Siwei Nan, Nana Wei, Hua-Jun Wu, Xiaoqi Zheng
2020 J jnl
Detection of differentially methylated CpG sites between tumor samples with uneven tumor purities.
Bioinform.
Weiwei Zhang, Ziyi Li, Nana Wei, Hua-Jun Wu, Xiaoqi Zheng
2019 J jnl
Comprehensive anticancer drug response prediction based on a simple cell line-drug complex network model.
BMC Bioinform.
Dong Wei, Chuanying Liu, Xiaoqi Zheng, Yushuang Li
2018 — conf
Exploration on education model of international engineering competencies for undergraduate students through Project-Based Learning: A case study from China.
ICEED
Qiudi Zhao, Xiaoqi Zheng, Siqi Zhou
2018 J jnl
Universal informative CpG sites for inferring tumor purity from DNA methylation microarray data.
J. Bioinform. Comput. Biol.
Haixia Dou, Yun Fang, Xiaoqi Zheng
2017 J jnl
A machine-learning approach for predicting palmitoylation sites from integrated sequence-based features.
J. Bioinform. Comput. Biol.
Liqi Li, Qifa Luo, Weidong Xiao, Jinhui Li, Shiwen Zhou, Yongsheng Li, Xiaoqi Zheng, Hua Yang
2017 J jnl
Accounting for tumor purity improves cancer subtype classification from DNA methylation data.
Bioinform.
Weiwei Zhang, Hao Feng, Hao Wu, Xiaoqi Zheng
2015 J jnl
Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model.
PLoS Comput. Biol.
Naiqian Zhang, Haiyun Wang, Yun Fang, Jun Wang, Xiaoqi Zheng, Xiaole Shirley Liu
2015 J jnl
Predicting tumor purity from methylation microarray data.
Bioinform.
Naiqian Zhang, Hua-Jun Wu, Weiwei Zhang, Jun Wang, Hao Wu, Xiaoqi Zheng
2014 J jnl
A computational method of predicting regulatory interactions in Arabidopsis based on gene expression data and sequence information.
Comput. Biol. Chem.
Xiaoqing Yu, Hongyun Gao, Xiaoqi Zheng, Chun Li, Jun Wang
2014 J jnl
Sequence-based identification of recombination spots using pseudo nucleic acid representation and recursive feature extraction by linear kernel SVM.
BMC Bioinform.
Liqi Li, Sanjiu Yu, Weidong Xiao, Yongsheng Li, Lan Huang, Xiaoqi Zheng, Shiwen Zhou, Hua Yang
2013 J jnl
Prioritization of candidate disease genes by topological similarity between disease and protein diffusion profiles.
BMC Bioinform.
Jie Zhu, Yufang Qin, Taigang Liu, Jun Wang, Xiaoqi Zheng
2011 J jnl
Similarity analysis of DNA sequences based on the weighted pseudo-entropy.
J. Comput. Chem.
Chun Li, Hong Ma, Yang Zhou, Xiaolei Wang, Xiaoqi Zheng
2010 J jnl
An information-theoretic approach to the prediction of protein structural class.
J. Comput. Chem.
Xiaoqi Zheng, Chun Li, Jun Wang