Xiaolei Zhu

21 papers Journal 19Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Adaptive dynamic training heterogeneous graph attention neural network for microRNA-disease association prediction and analysis framework.
Eng. Appl. Artif. Intell.
Yinbo Liu, Sijian Wen, Qi Wu, Yue Yi, Yongmei Wang, Xiaolei Zhu
2025 J jnl
AVPpred-BWR: antiviral peptides prediction via biological words representation.
Bioinform.
Zhuoyu Wei, Yongqi Shen, Xiang Tang, Jian Wen, Youyi Song, Mingqiang Wei, Jing Cheng, Xiaolei Zhu
2025 J jnl
DTI-MHAPR: optimized drug-target interaction prediction via PCA-enhanced features and heterogeneous graph attention networks.
BMC Bioinform.
Guang Yang, Yinbo Liu, Sijian Wen, Wenxi Chen, Xiaolei Zhu, Yongmei Wang
2025 J jnl
Predicting nucleic acid binding sites by attention map-guided graph convolutional network with protein language embeddings and physicochemical information.
Briefings Bioinform.
Xiang Li, Wei Peng, Xiaolei Zhu
2025 J jnl
Prediction of circRNA-drug sensitivity using random auto-encoders and multi-layer heterogeneous graph transformers.
Appl. Intell.
Yinbo Liu, Xinxin Ren, Jun Li, Xiao Chen, Xiaolei Zhu
2024 J jnl
NeuroPpred-SHE: An interpretable neuropeptides prediction model based on selected features from hand-crafted features and embeddings of T5 model.
Comput. Biol. Medicine
Jian Wen, Zhijie Ding, Zhuoyu Wei, Hongwei Xia, Yong Zhang, Xiaolei Zhu
2024 — conf
iDNA-EBT: An ensemble model based on multi-scale secondary fine-tuned BERT.
BCB
Wei Peng, Yueran Hu, Zihan Zhao, Jingwen Yan, Hongwei Xia, Xiaolei Zhu
2023 J jnl
A Lorentzian-ℓp norm regularization based algorithm for recovering sparse signals in two types of impulsive noise.
J. Comput. Appl. Math.
Yong Zhang, Xiaolei Zhu, Aiguo Liu, Shichao Yi
2023 J jnl
Protein-DNA interface hotspots prediction based on fusion features of embeddings of protein language model and handcrafted features.
Comput. Biol. Chem.
Xiang Li, Gang-Ao Wang, Zhuoyu Wei, Hong Wang, Xiaolei Zhu
2023 — conf
miRNA-Disease Association Prediction based on Heterogeneous Graph Transformer with Multi-view similarity and Random Auto-encoder.
BIBM
Yinbo Liu, Xiaodi Yan, Jun Li, Xinxin Ren, Qi Wu, Gang-Ao Wang, Yuqing Chen, Xiaolei Zhu
2022 J jnl
BERT-Kcr: prediction of lysine crotonylation sites by a transfer learning method with pre-trained BERT models.
Bioinform.
Yanhua Qiao, Xiaolei Zhu, Haipeng Gong
2022 J jnl
BERT-Kgly: A Bidirectional Encoder Representations From Transformers (BERT)-Based Model for Predicting Lysine Glycation Site for Homo sapiens.
Frontiers Bioinform.
Yinbo Liu, Yufeng Liu, Gang-Ao Wang, Yinchu Cheng, Shoudong Bi, Xiaolei Zhu
2020 J jnl
iPNHOT: a knowledge-based approach for identifying protein-nucleic acid interaction hot spots.
BMC Bioinform.
Xiaolei Zhu, Ling Liu, Jingjing He, Ting Fang, Yi Xiong, Julie C. Mitchell
2020 J jnl
m5CPred-SVM: a novel method for predicting m5C sites of RNA.
BMC Bioinform.
Xiao Chen, Yi Xiong, Yinbo Liu, Yuqing Chen, Shoudong Bi, Xiaolei Zhu
2018 J jnl
Protein-protein interface hot spots prediction based on a hybrid feature selection strategy.
BMC Bioinform.
Yanhua Qiao, Yi Xiong, Hongyun Gao, Xiaolei Zhu, Peng Chen
2018 J jnl
PseUI: Pseudouridine sites identification based on RNA sequence information.
BMC Bioinform.
Jingjing He, Ting Fang, Zizheng Zhang, Bei Huang, Xiaolei Zhu, Yi Xiong
2018 J jnl
dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions.
Database J. Biol. Databases Curation
Ling Liu, Yi Xiong, Hongyun Gao, Dong-Qing Wei, Julie C. Mitchell, Xiaolei Zhu
2016 J jnl
Combined Approach of Patch-Surfer and PL-PatchSurfer for Protein-Ligand Binding Prediction in CSAR 2013 and 2014.
J. Chem. Inf. Model.
Xiaolei Zhu, Woong-Hee Shin, Hyungrae Kim, Daisuke Kihara
2016 J jnl
DBSI server: DNA binding site identifier.
Bioinform.
Shravan Sukumar, Xiaolei Zhu, Spencer S. Ericksen, Julie C. Mitchell
2015 J jnl
Large-scale binding ligand prediction by improved patch-based method Patch-Surfer2.0.
Bioinform.
Xiaolei Zhu, Yi Xiong, Daisuke Kihara
2009 J jnl
A novel method for enzyme design.
J. Comput. Chem.
Xiaolei Zhu, Luhua Lai