Xiaolei Zhu - RankMe

21 papers Journal 19Unranked 2

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Adaptive dynamic training heterogeneous graph attention neural network for microRNA-disease association prediction and analysis framework. Eng. Appl. Artif. Intell. Yinbo Liu, Sijian Wen, Qi Wu, Yue Yi, Yongmei Wang, Xiaolei Zhu
2025	J	`jnl`	AVPpred-BWR: antiviral peptides prediction via biological words representation. Bioinform. Zhuoyu Wei, Yongqi Shen, Xiang Tang, Jian Wen, Youyi Song, Mingqiang Wei, Jing Cheng, Xiaolei Zhu
2025	J	`jnl`	DTI-MHAPR: optimized drug-target interaction prediction via PCA-enhanced features and heterogeneous graph attention networks. BMC Bioinform. Guang Yang, Yinbo Liu, Sijian Wen, Wenxi Chen, Xiaolei Zhu, Yongmei Wang
2025	J	`jnl`	Predicting nucleic acid binding sites by attention map-guided graph convolutional network with protein language embeddings and physicochemical information. Briefings Bioinform. Xiang Li, Wei Peng, Xiaolei Zhu
2025	J	`jnl`	Prediction of circRNA-drug sensitivity using random auto-encoders and multi-layer heterogeneous graph transformers. Appl. Intell. Yinbo Liu, Xinxin Ren, Jun Li, Xiao Chen, Xiaolei Zhu
2024	J	`jnl`	NeuroPpred-SHE: An interpretable neuropeptides prediction model based on selected features from hand-crafted features and embeddings of T5 model. Comput. Biol. Medicine Jian Wen, Zhijie Ding, Zhuoyu Wei, Hongwei Xia, Yong Zhang, Xiaolei Zhu
2024	—	`conf`	iDNA-EBT: An ensemble model based on multi-scale secondary fine-tuned BERT. BCB Wei Peng, Yueran Hu, Zihan Zhao, Jingwen Yan, Hongwei Xia, Xiaolei Zhu
2023	J	`jnl`	A Lorentzian-ℓp norm regularization based algorithm for recovering sparse signals in two types of impulsive noise. J. Comput. Appl. Math. Yong Zhang, Xiaolei Zhu, Aiguo Liu, Shichao Yi
2023	J	`jnl`	Protein-DNA interface hotspots prediction based on fusion features of embeddings of protein language model and handcrafted features. Comput. Biol. Chem. Xiang Li, Gang-Ao Wang, Zhuoyu Wei, Hong Wang, Xiaolei Zhu
2023	—	`conf`	miRNA-Disease Association Prediction based on Heterogeneous Graph Transformer with Multi-view similarity and Random Auto-encoder. BIBM Yinbo Liu, Xiaodi Yan, Jun Li, Xinxin Ren, Qi Wu, Gang-Ao Wang, Yuqing Chen, Xiaolei Zhu
2022	J	`jnl`	BERT-Kcr: prediction of lysine crotonylation sites by a transfer learning method with pre-trained BERT models. Bioinform. Yanhua Qiao, Xiaolei Zhu, Haipeng Gong
2022	J	`jnl`	BERT-Kgly: A Bidirectional Encoder Representations From Transformers (BERT)-Based Model for Predicting Lysine Glycation Site for Homo sapiens. Frontiers Bioinform. Yinbo Liu, Yufeng Liu, Gang-Ao Wang, Yinchu Cheng, Shoudong Bi, Xiaolei Zhu
2020	J	`jnl`	iPNHOT: a knowledge-based approach for identifying protein-nucleic acid interaction hot spots. BMC Bioinform. Xiaolei Zhu, Ling Liu, Jingjing He, Ting Fang, Yi Xiong, Julie C. Mitchell
2020	J	`jnl`	m5CPred-SVM: a novel method for predicting m5C sites of RNA. BMC Bioinform. Xiao Chen, Yi Xiong, Yinbo Liu, Yuqing Chen, Shoudong Bi, Xiaolei Zhu
2018	J	`jnl`	Protein-protein interface hot spots prediction based on a hybrid feature selection strategy. BMC Bioinform. Yanhua Qiao, Yi Xiong, Hongyun Gao, Xiaolei Zhu, Peng Chen
2018	J	`jnl`	PseUI: Pseudouridine sites identification based on RNA sequence information. BMC Bioinform. Jingjing He, Ting Fang, Zizheng Zhang, Bei Huang, Xiaolei Zhu, Yi Xiong
2018	J	`jnl`	dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions. Database J. Biol. Databases Curation Ling Liu, Yi Xiong, Hongyun Gao, Dong-Qing Wei, Julie C. Mitchell, Xiaolei Zhu
2016	J	`jnl`	Combined Approach of Patch-Surfer and PL-PatchSurfer for Protein-Ligand Binding Prediction in CSAR 2013 and 2014. J. Chem. Inf. Model. Xiaolei Zhu, Woong-Hee Shin, Hyungrae Kim, Daisuke Kihara
2016	J	`jnl`	DBSI server: DNA binding site identifier. Bioinform. Shravan Sukumar, Xiaolei Zhu, Spencer S. Ericksen, Julie C. Mitchell
2015	J	`jnl`	Large-scale binding ligand prediction by improved patch-based method Patch-Surfer2.0. Bioinform. Xiaolei Zhu, Yi Xiong, Daisuke Kihara
2009	J	`jnl`	A novel method for enzyme design. J. Comput. Chem. Xiaolei Zhu, Luhua Lai