Xiaoke Ma

88 papers A* 2B 1Journal 79Unranked 6
YearRankTypeTitle / Venue / Authors
2026 J jnl
Network models for bridging denoising and identifying spatial domains of spatially resolved transcriptomics.
PLoS Comput. Biol.
Haiyue Wang, Wensheng Zhang, Zaiyi Liu, Xiaoke Ma
2026 J jnl
SA2E: spatial-aware auto-encoder for cell type deconvolution of spatial transcriptomics data.
Bioinform.
Yaxiong Ma, Zengfa Dou, Yuhong Zha, Xiaoke Ma
2025 J jnl
Adaptive structural-guided multi-level representation learning with graph contrastive for incomplete multi-view clustering.
Inf. Fusion
Haiyue Wang, Wensheng Zhang, Quan Wang, Xiaoke Ma
2025 J jnl
Denoising spatially resolved transcriptomics with consistency of heterogeneous spatial coordinates, transcription, and morphology.
Briefings Bioinform.
Haiyue Wang, Peng Gao, Shaoqing Feng, Xiaoke Ma
2025 J jnl
Enhancing and accelerating cell type deconvolution of large-scale spatial transcriptomics slices with dual network model.
Bioinform.
Yuhong Zha, Shaoqing Feng, Peng Gao, Quan Zou, Xiaoke Ma
2025 A* conf
FissionVAE: Federated Non-IID Image Generation with Latent Space and Decoder Decomposition.
IJCAI
Chen Hu, Hanchi Ren, Jingjing Deng, Xianghua Xie, Xiaoke Ma
2025 J jnl
Group link prediction in bipartite graphs with graph neural networks.
Pattern Recognit.
Shijie Luo, He Li, Jianbin Huang, Xiaoke Ma, Jiangtao Cui, Shaojie Qiao, Jaesoo Yoo
2025 J jnl
Identifying Spatial Domains From Spatial Multi-Omics Data With Graph Mutual Information and Deep Subspace Learning.
IEEE Trans. Comput. Biol. Bioinform.
Yu Wang, Wei Ma, Yaxiong Ma, Wei Zhao, Xiaoke Ma
2025 J jnl
Learning multi-level topology representation for multi-view clustering with deep non-negative matrix factorization.
Neural Networks
Zengfa Dou, Nian Peng, Weiming Hou, Xianghua Xie, Xiaoke Ma
2025 J jnl
Local High-Order Graph Learning for Multi-View Clustering.
IEEE Trans. Big Data
Zhi Wang, Qiang Lin, Yaxiong Ma, Xiaoke Ma
2025 J jnl
Multi-Graph Contrastive Learning for Community Detection in Multi-Layer Networks.
IEEE Trans. Emerg. Top. Comput. Intell.
Songen Cao, Xiaoyi Lv, Yaxiong Ma, Xiaoke Ma
2025 J jnl
One-step Multi-view Spectral Clustering with Subspaces Fusion on Grassmann manifold.
Neurocomputing
Zengfa Dou, Haodong Ren, Yaxiong Ma, Yue Gao, Guohua Huang, Xiaoke Ma
2025 — conf
Safeguarding Privacy for Medical Data with a Novel Key-Lock Module in Federated Learning.
AIiH (2)
Hanchi Ren, Jingjing Deng, Xianghua Xie, Xiaoke Ma, Jianfeng Ma
2025 J jnl
Self-Supervised Graph Embedding Clustering.
IEEE Trans. Pattern Anal. Mach. Intell.
Fangfang Li, Quanxue Gao, Xiaoke Ma, Ming Yang, Cheng Deng
2025 J jnl
Sparse representation for restoring images by exploiting topological structure of graph of patches.
IET Image Process.
Yaxian Gao, Zhaoyuan Cai, Xianghua Xie, Jingjing Deng, Zengfa Dou, Xiaoke Ma
2024 — conf
Centersam: Fully Automatic Prompt for Dense Nucleus Segmentation.
ISBI
Yiming Li, Hanchi Ren, Jingjing Deng, Xiaoke Ma, Xianghua Xie
2024 J jnl
Clustering dynamic networks by discriminating roles of vertices and capturing temporality with subsequent feature projection.
Knowl. Based Syst.
Yaxiong Ma, Yue Gao, Zengfa Dou, Guohua Huang, Xiaoke Ma
2024 J jnl
Contrastive and adversarial regularized multi-level representation learning for incomplete multi-view clustering.
Neural Networks
Haiyue Wang, Wensheng Zhang, Xiaoke Ma
2024 J jnl
FedBoosting: Federated learning with gradient protected boosting for text recognition.
Neurocomputing
Hanchi Ren, Jingjing Deng, Xianghua Xie, Xiaoke Ma, Yichuan Wang
2024 J jnl
FissionVAE: Federated Non-IID Image Generation with Latent Space and Decoder Decomposition.
CoRR
Chen Hu, Jingjing Deng, Xianghua Xie, Xiaoke Ma
2024 J jnl
Graph Contrastive Learning for Clustering of Multi-Layer Networks.
IEEE Trans. Big Data
Yifei Yang, Xiaoke Ma
2024 J jnl
Graph Contrastive Learning for Tracking Dynamic Communities in Temporal Networks.
IEEE Trans. Emerg. Top. Comput. Intell.
Yun Ai, Xianghua Xie, Xiaoke Ma
2024 J jnl
Image restoration with group sparse representation and low-rank group residual learning.
IET Image Process.
Zhaoyuan Cai, Xianghua Xie, Jingjing Deng, Zengfa Dou, Bo Tong, Xiaoke Ma
2024 J jnl
Joint learning of data recovering and graph contrastive denoising for incomplete multi-view clustering.
Inf. Fusion
Haiyue Wang, Quan Wang, Qiguang Miao, Xiaoke Ma
2024 J jnl
Learning Consistency and Specificity of Cells From Single-Cell Multi-Omic Data.
IEEE J. Biomed. Health Informatics
Haiyue Wang, Zaiyi Liu, Xiaoke Ma
2024 J jnl
Learning deep representation and discriminative features for clustering of multi-layer networks.
Neural Networks
Wenming Wu, Xiaoke Ma, Quan Wang, Maoguo Gong, Quanxue Gao
2024 J jnl
Noised Multi-Layer Networks Clustering With Graph Denoising and Structure Learning.
IEEE Trans. Knowl. Data Eng.
Wenming Wu, Wensheng Zhang, Maoguo Gong, Xiaoke Ma
2024 A* conf
TUT4CRS: Time-aware User-preference Tracking for Conversational Recommendation System.
ACM Multimedia
Dongxiao He, Jinghan Zhang, Xiaobao Wang, Meng Ge, Zhiyong Feng, Longbiao Wang, Xiaoke Ma
2023 J jnl
AnomMAN: Detect anomalies on multi-view attributed networks.
Inf. Sci.
Linghao Chen, He Li, Wanyuan Zhang, Jianbin Huang, Xiaoke Ma, Jiangtao Cui, Ning Li, Jaesoo Yoo
2023 J jnl
Clustering of Multilayer Networks Using Joint Learning Algorithm With Orthogonality and Specificity of Features.
IEEE Trans. Cybern.
Wenming Wu, Maoguo Gong, Xiaoke Ma
2023 J jnl
Clustering of multi-layer networks with structural relations and conservation of features.
Appl. Soft Comput.
Wentao Jia, Xiaoke Ma
2023 J jnl
DMGF-Net: An Efficient Dynamic Multi-Graph Fusion Network for Traffic Prediction.
ACM Trans. Knowl. Discov. Data
He Li, Duo Jin, Xuejiao Li, Jianbin Huang, Xiaoke Ma, Jiangtao Cui, Deshuang Huang, Shaojie Qiao, Jaesoo Yoo
2023 J jnl
Generative Graph Neural Networks for Link Prediction.
CoRR
Xingping Xian, Tao Wu, Xiaoke Ma, Shaojie Qiao, Yabin Shao, Chao Wang, Lin Yuan, Yu Wu
2023 J jnl
Gradient Leakage Defense with Key-Lock Module for Federated Learning.
CoRR
Hanchi Ren, Jingjing Deng, Xianghua Xie, Xiaoke Ma, Jianfeng Ma
2023 J jnl
Joint Learning of Feature Extraction and Clustering for Large-Scale Temporal Networks.
IEEE Trans. Cybern.
Dongyuan Li, Xiaoke Ma, Maoguo Gong
2023 J jnl
Layer-Specific Modules Detection in Cancer Multi-Layer Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaoke Ma, Wei Zhao, Wenming Wu
2023 J jnl
Learning specific and conserved features of multi-layer networks.
Inf. Sci.
Wenming Wu, Tao Yang, Xiaoke Ma, Wensheng Zhang, He Li, Jianbin Huang, Yanni Li, Jiangtao Cui
2023 J jnl
Multi-View Clustering With Graph Learning for scRNA-Seq Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Wenming Wu, Wensheng Zhang, Weimin Hou, Xiaoke Ma
2023 J jnl
Multi-View Clustering for Integration of Gene Expression and Methylation Data With Tensor Decomposition and Self-Representation Learning.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaowei Gao, Yan Wang, Weimin Hou, Zaiyi Liu, Xiaoke Ma
2023 J jnl
Network-Based Structural Learning Nonnegative Matrix Factorization Algorithm for Clustering of scRNA-Seq Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Wenming Wu, Xiaoke Ma
2022 J jnl
A Two-Phase Method to Balance the Result of Distributed Graph Repartitioning.
IEEE Trans. Big Data
He Li, Jianbin Huang, Hang Yuan, Jiangtao Cui, Xiaoke Ma, Shaojie Qiao, Xindong Wu
2022 J jnl
A hybrid method of detecting flame from video stream.
IET Image Process.
Zengfa Dou, Xiaoke Ma, Xianghua Xie, Hui Liu, Chubing Guo
2022 J jnl
An Integrative Framework of Heterogeneous Genomic Data for Cancer Dynamic Modules Based on Matrix Decomposition.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaoke Ma, Peng Gang Sun, Maoguo Gong
2022 J jnl
Clustering of Cancer Attributed Networks by Dynamically and Jointly Factorizing Multi-Layer Graphs.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zhihao Huang, Yan Wang, Xiaoke Ma
2022 J jnl
Clustering of noised and heterogeneous multi-view data with graph learning and projection decomposition.
Knowl. Based Syst.
Haiyue Wang, Wensheng Zhang, Xiaoke Ma
2022 J jnl
Deep Reinforcement Learning-based Trajectory Pricing on Ride-hailing Platforms.
ACM Trans. Intell. Syst. Technol.
Jianbin Huang, Longji Huang, Meijuan Liu, He Li, Qinglin Tan, Xiaoke Ma, Jiangtao Cui, De-Shuang Huang
2022 J jnl
Dynamic Module Detection in Temporal Attributed Networks of Cancers.
IEEE ACM Trans. Comput. Biol. Bioinform.
Dongyuan Li, Shuyao Zhang, Xiaoke Ma
2022 J jnl
Edge Repartitioning via Structure-Aware Group Migration.
IEEE Trans. Comput. Soc. Syst.
He Li, Hang Yuan, Jianbin Huang, Xiaoke Ma, Jiangtao Cui, Jaesoo Yoo
2022 J jnl
Joint multi-label learning and feature extraction for temporal link prediction.
Pattern Recognit.
Xiaoke Ma, Shiyin Tan, Xianghua Xie, Xiaoxiong Zhong, Jingjing Deng
2022 J jnl
Learning deep features and topological structure of cells for clustering of scRNA-sequencing data.
Briefings Bioinform.
Haiyue Wang, Xiaoke Ma
2022 J jnl
Learning discriminative and structural samples for rare cell types with deep generative model.
Briefings Bioinform.
Haiyue Wang, Xiaoke Ma
2022 J jnl
Multi-View Clustering With Self-Representation and Structural Constraint.
IEEE Trans. Big Data
Xiaowei Gao, Xiaoke Ma, Wensheng Zhang, Jianbin Huang, He Li, Yanni Li, Jiangtao Cui
2022 J jnl
Multi-view clustering with constructed bipartite graph in embedding space.
Knowl. Based Syst.
Benhui Zhang, Xiaoke Ma
2022 J jnl
Network-based integrative analysis of single-cell transcriptomic and epigenomic data for cell types.
Briefings Bioinform.
Wenming Wu, Wensheng Zhang, Xiaoke Ma
2022 J jnl
POTAM: A Parallel Optimal Task Allocation Mechanism for Large-Scale Delay Sensitive Mobile Edge Computing.
IEEE Trans. Commun.
Xiaoxiong Zhong, Xinghan Wang, Tingting Yang, Yuanyuan Yang, Yang Qin, Xiaoke Ma
2022 J jnl
Predicting combinations of drugs by exploiting graph embedding of heterogeneous networks.
BMC Bioinform.
Fei Song, Shiyin Tan, Zengfa Dou, Xiaogang Liu, Xiaoke Ma
2021 J jnl
Clustering Heterogeneous Information Network by Joint Graph Embedding and Nonnegative Matrix Factorization.
ACM Trans. Knowl. Discov. Data
Benhui Zhang, Maoguo Gong, Jianbin Huang, Xiaoke Ma
2021 J jnl
Detecting dynamic community by fusing network embedding and nonnegative matrix factorization.
Knowl. Based Syst.
Dongyuan Li, Xiaoxiong Zhong, Zengfa Dou, Maoguo Gong, Xiaoke Ma
2021 J jnl
Embedding regularized nonnegative matrix factorization for structural reduction in multi-layer networks.
Appl. Soft Comput.
Zhihao Huang, Zengfa Dou, Xiaoke Ma
2021 J jnl
Group Reassignment for Dynamic Edge Partitioning.
IEEE Trans. Parallel Distributed Syst.
He Li, Hang Yuan, Jianbin Huang, Jiangtao Cui, Xiaoke Ma, Senzhang Wang, Jaesoo Yoo, Philip S. Yu
2021 J jnl
Identification of dynamic community in temporal network via joint learning graph representation and nonnegative matrix factorization.
Neurocomputing
Dongyuan Li, Qiang Lin, Xiaoke Ma
2021 J jnl
Identification of multi-layer networks community by fusing nonnegative matrix factorization and topological structural information.
Knowl. Based Syst.
Changzhou Ma, Qiang Lin, Yong Lin, Xiaoke Ma
2021 J jnl
Joint nonnegative matrix factorization and network embedding for graph co-clustering.
Neurocomputing
Yan Wang, Xiaoke Ma
2021 — conf
Multi-view Clustering for the Integration Analysis of Gene Expression and Methylation Data.
BIBM
Xiaowei Gao, Xiaogang Liu, Xiaoke Ma
2021 J jnl
TLGP: a flexible transfer learning algorithm for gene prioritization based on heterogeneous source domain.
BMC Bioinform.
Yan Wang, Zuheng Xia, Jingjing Deng, Xianghua Xie, Maoguo Gong, Xiaoke Ma
2021 — conf
Temporal Link Prediction for Cancer Networks using Structural Consistency Regularized Non-negative Matrix Factorization.
BIBM
Junyao Zhang, Xiaogang Liu, Xiaoke Ma
2021 — conf
Transfer Learning for Gene Ranking across Cancers.
BIBM
Fei Song, Xiaogang Liu, Xiaoke Ma
2021 J jnl
jSRC: a flexible and accurate joint learning algorithm for clustering of single-cell RNA-sequencing data.
Briefings Bioinform.
Wenming Wu, Zaiyi Liu, Xiaoke Ma
2020 J jnl
A Parallel Optimal Task Allocation Mechanism for Large-Scale Mobile Edge Computing.
CoRR
Xiaoxiong Zhong, Xinghan Wang, Yuanyuan Yang, Yang Qin, Xiaoke Ma, Tingting Yang
2020 B conf
A Task Allocation Framework for Large-Scale Mobile Edge Computing.
GLOBECOM
Xinghan Wang, Xiaoxiong Zhong, Yanbin Zheng, Xiaoke Ma, Tingting Yang, Genglin Zhang
2020 J jnl
Clustering of Cancer Attributed Networks via Integration of Graph Embedding and Matrix Factorization.
IEEE Access
Qiang Lin, Yong Lin, Qiang Yu, Xiaoke Ma
2020 J jnl
Co-regularized nonnegative matrix factorization for evolving community detection in dynamic networks.
Inf. Sci.
Xiaoke Ma, Benhui Zhang, Changzhou Ma, Zhiyu Ma
2020 J jnl
Detecting community in attributed networks by dynamically exploring node attributes and topological structure.
Knowl. Based Syst.
Zhihao Huang, Xiaoxiong Zhong, Qiang Wang, Maoguo Gong, Xiaoke Ma
2020 J jnl
Joint learning dimension reduction and clustering of single-cell RNA-sequencing data.
Bioinform.
Wenming Wu, Xiaoke Ma
2020 — conf
SeHNE: Semi-supervised Heterogeneous Network Embedding for Drug Combination.
BIBM
Shiyin Tan, Xiaoke Ma
2019 J jnl
An Integrative Framework for Protein Interaction Network and Methylation Data to Discover Epigenetic Modules.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaoke Ma, Penggang Sun, Zhong-Yuan Zhang
2019 J jnl
Community Detection in Multi-Layer Networks Using Joint Nonnegative Matrix Factorization.
IEEE Trans. Knowl. Data Eng.
Xiaoke Ma, Di Dong, Quan Wang
2018 J jnl
Extracting Stage-Specific and Dynamic Modules Through Analyzing Multiple Networks Associated with Cancer Progression.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaoke Ma, Wanxin Tang, Peizhuo Wang, Xingli Guo, Lin Gao
2018 J jnl
Identifying Condition-Specific Modules by Clustering Multiple Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaoke Ma, Penggang Sun, Guimin Qin
2017 J jnl
Discovering DNA methylation patterns for long non-coding RNAs associated with cancer subtypes.
Comput. Biol. Chem.
Xiaoke Ma, Liang Yu, Peizhuo Wang, Xiaofei Yang
2017 J jnl
Evolutionary Nonnegative Matrix Factorization Algorithms for Community Detection in Dynamic Networks.
IEEE Trans. Knowl. Data Eng.
Xiaoke Ma, Di Dong
2017 J jnl
Multiple network algorithm for epigenetic modules via the integration of genome-wide DNA methylation and gene expression data.
BMC Bioinform.
Xiaoke Ma, Zaiyi Liu, Zhongyuan Zhang, Xiao-Tai Huang, Wanxin Tang
2016 J jnl
The extraction of drug-disease correlations based on module distance in incomplete human interactome.
BMC Syst. Biol.
Liang Yu, Bingbo Wang, Xiaoke Ma, Lin Gao
2015 J jnl
Revealing Pathway Dynamics in Heart Diseases by Analyzing Multiple Differential Networks.
PLoS Comput. Biol.
Xiaoke Ma, Long Gao, Georgios Karamanlidis, Peng Gao, Chi Fung Lee, Lorena Garcia-Menendez, Rong Tian, Kai Tan
2014 J jnl
Modeling disease progression using dynamics of pathway connectivity.
Bioinform.
Xiaoke Ma, Long Gao, Kai Tan
2012 J jnl
Discovering protein complexes in protein interaction networks via exploring the weak ties effect.
BMC Syst. Biol.
Xiaoke Ma, Lin Gao
2012 J jnl
Predicting protein complexes in protein interaction networks using a core-attachment algorithm based on graph communicability.
Inf. Sci.
Xiaoke Ma, Lin Gao
2010 J jnl
A centrality measure based on spectral optimization of modularity density.
Sci. China Inf. Sci.
Lidong Fu, Lin Gao, Xiaoke Ma