Xiaodan Fan

45 papers A* 1B 1Journal 37Unranked 6
YearRankTypeTitle / Venue / Authors
2026 J jnl
Fast Gibbs Sampling on Bayesian Hidden Markov Model with Missing Observations.
CoRR
Dongrong Li, Tianwei Yu, Xiaodan Fan
2026 J jnl
Interpretable integration of unpaired multi-omics for Alzheimer's diagnosis via cross-modal transformer reconstruction.
PLoS Comput. Biol.
Kai Liao, Danfeng Du, Jiawei Li, Jian Huang, Xiaodan Fan, Changshui Chen, Shanshan Wu, Bowei Yan, Haibo Li
2026 J jnl
Iterative optimal transport for multimodal image registration.
Pattern Recognit.
Mengyu Li, Cheng Meng, Xiaodan Fan
2026 J jnl
RoBep: a region-oriented deep learning model for B-cell epitope prediction.
Bioinform.
Yitao Xu, Guanyun Wei, Jingying Zhou, Yuanhua Huang, Weichuan Yu, Zhixiang Lin, Ran Liu, Xiaodan Fan
2025 J jnl
Cell lineage tracing: Methods, applications, and challenges.
Quant. Biol.
Shanjun Mao, Chenyang Zhang, Runjiu Chen, Shan Tang, Xiaodan Fan, Jie Hu
2025 J jnl
Degrees of Freedom: Search Cost and Self-Consistency.
J. Comput. Graph. Stat.
Lijun Wang, Hongyu Zhao, Xiaodan Fan
2025 J jnl
Double optimal transport for differential gene regulatory network inference with unpaired samples.
Bioinform.
Mengyu Li, Bencong Zhu, Cheng Meng, Xiaodan Fan
2025 J jnl
Monotone Cubic B-Splines with a Neural-Network Generator.
J. Comput. Graph. Stat.
Lijun Wang, Xiaodan Fan, Huabai Li, Jun S. Liu
2025 A* conf
RBPtool: A Deep Language Model Framework for Multi-Resolution RBP-RNA Binding Prediction and RNA Molecule Design.
EMNLP
Jiyue Jiang, Yitao Xu, Zikang Wang, Yihan Ye, Yanruisheng Shao, Yuheng Shan, Jiuming Wang, Xiaodan Fan, Jiao Yuan, Yu Li
2025 J jnl
X-scPAE: An explainable deep learning model for embryonic lineage allocation prediction based on single-cell transcriptomics revealing key genes in embryonic cell development.
Comput. Biol. Medicine
Kai Liao, Bowei Yan, Ziyin Ding, Jian Huang, Xiaodan Fan, Shanshan Wu, Changshui Chen, Haibo Li
2024 J jnl
NetMIM: network-based multi-omics integration with block missingness for biomarker selection and disease outcome prediction.
Briefings Bioinform.
Bencong Zhu, Zhen Zhang, Suet Yi Leung, Xiaodan Fan
2023 J jnl
A Bayesian approach to estimate MHC-peptide binding threshold.
Briefings Bioinform.
Ran Liu, Ye-Fan Hu, Jian-Dong Huang, Xiaodan Fan
2023 J jnl
A Bayesian model for identifying cancer subtypes from paired methylation profiles.
Briefings Bioinform.
Yetian Fan, April S. Chan, Jun Zhu, Suet Yi Leung, Xiaodan Fan
2023 J jnl
Automatic block-wise genotype-phenotype association detection based on hidden Markov model.
BMC Bioinform.
Jin Du, Chaojie Wang, Lijun Wang, Shanjun Mao, Bencong Zhu, Zheng Li, Xiaodan Fan
2023 J jnl
Bayesian detection of event spreading pattern from multivariate binary time series.
Commun. Stat. Simul. Comput.
Jie Hu, Zirui Chen, Wenwei Lin, Xiaodan Fan
2023 J jnl
Family-Specific Training Improves Linear B Cell Epitope Prediction for Emerging Viruses.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ran Liu, Ye-Fan Hu, Jin Du, Bao-Zhong Zhang, Thomas Yau, Xiaodan Fan, Jian-Dong Huang
2023 J jnl
Globally and symmetrically identified Bayesian multinomial probit model.
Stat. Comput.
Maolin Pan, Minggao Gu, Xianyi Wu, Xiaodan Fan
2023 J jnl
Revealing Free Energy Landscape From MD Data via Conditional Angle Partition Tree.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hangjin Jiang, Han Li, Wing Hung Wong, Xiaodan Fan
2022 J jnl
High-dimensional correlation matrix estimation for general continuous data with Bagging technique.
Mach. Learn.
Chaojie Wang, Jin Du, Xiaodan Fan
2021 J jnl
Correlation for tree-shaped datasets and its Bayesian estimation.
Comput. Stat. Data Anal.
Shanjun Mao, Xiaodan Fan, Jie Hu
2021 J jnl
Deep6mA: A deep learning framework for exploring similar patterns in DNA N6-methyladenine sites across different species.
PLoS Comput. Biol.
Zutan Li, Hangjin Jiang, Lingpeng Kong, Yuanyuan Chen, Kun Lang, Xiaodan Fan, Liangyun Zhang, Cong Pian
2020 J jnl
Adaptive Fuzzy Dynamic Surface Control for Nonlinear Systems with Time-Varying Input Delay and Sampled Data.
Int. J. Fuzzy Syst.
Xiaodan Fan, Kunting Yu
2020 J jnl
Appearance-free Tripartite Matching for Multiple Object Tracking.
CoRR
Lijun Wang, Yanting Zhu, Jue Shi, Xiaodan Fan
2020 J jnl
Can ODE gene regulatory models neglect time lag or measurement scaling?
Bioinform.
Jie Hu, Huihui Qin, Xiaodan Fan
2020 J jnl
MM-6mAPred: identifying DNA N6-methyladenine sites based on Markov model.
Bioinform.
Cong Pian, Guang-Le Zhang, Fei Li, Xiaodan Fan
2020 J jnl
SOMM4mC: a second-order Markov model for DNA N4-methylcytosine site prediction in six species.
Bioinform.
Jiali Yang, Kun Lang, Guang-Le Zhang, Xiaodan Fan, Yuanyuan Chen, Cong Pian
2020 J jnl
The Spread of Information in Virtual Communities.
Complex.
Zhen Zhang, Jin Du, Qingchun Meng, Xiaoxia Rong, Xiaodan Fan
2020 J jnl
miR+Pathway: the integration and visualization of miRNA and KEGG pathways.
Briefings Bioinform.
Cong Pian, Guang-Le Zhang, Libin Gao, Xiaodan Fan, Fei Li
2018 J jnl
Guest Editorial for Special Section on the Sixth National Conference on Bioinformatics and System Biology of China.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaodan Fan, Xinglai Ji, Rui Jiang
2017 J jnl
A Bayesian Method for Joint Clustering of Vectorial Data and Network Data.
CoRR
Yunchuan Kong, Xiaodan Fan
2017 J jnl
BPP: a sequence-based algorithm for branch point prediction.
Bioinform.
Qing Zhang, Xiaodan Fan, Yejun Wang, Ming-an Sun, Jianlin Shao, Dianjing Guo
2017 J jnl
Detect differentially methylated regions using non-homogeneous hidden Markov model for methylation array data.
Bioinform.
Linghao Shen, Jun Zhu, Shuo-Yen Robert Li, Xiaodan Fan
2016 — conf
Analysis of SNP Network Structure Based on Mutual Information of Breast Cancer Susceptibility Genes.
BIC-TA (2)
Shudong Wang, Shanqiang Zhang, Shanshan Li, Xinzeng Wang, Sicheng He, Yan Zhao, Xiaodan Fan, Fayou Yuan, Xinjie Zhu, Yun Jiang
2016 — conf
Variable selection and prediction of clinical outcome with multiply-imputed data via Bayesian model averaging.
BIBM
Guozhi Jiang, Claudia H. Tam, Andrea O. Y. Luk, Alice P. S. Kong, Wing-Yee So, Juliana C. N. Chan, Ronald Ching Wan Ma, Xiaodan Fan
2015 J jnl
A Resampling Based Clustering Algorithm for Replicated Gene Expression Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Han Li, Chun Li, Jie Hu, Xiaodan Fan
2013 — conf
Development of Prediction Models under Multiple Imputation for Coronary Heart Disease in Type 2 Diabetes Mellitus.
BIOINFORMATICS
Guozhi Jiang, Eric S. Lau, Ying Wang, Andrea O. Y. Luk, Claudia H. Tam, Janice S. Ho, Vincent K. Lam, Heung M. Lee, Xiaodan Fan, Wing-Yee So, Juliana C. Chan, Ronald C. Ma
2013 J jnl
Improved short adjacent repeat identification using three evolutionary Monte Carlo schemes.
Int. J. Data Min. Bioinform.
Jin Xu, Qiwei Li, Victor O. K. Li, Shuo-Yen Robert Li, Xiaodan Fan
2012 B conf
Short adjacent repeat identification based on Chemical Reaction Optimization.
IEEE Congress on Evolutionary Computation
Jin Xu, Albert Y. S. Lam, Victor O. K. Li, Qiwei Li, Xiaodan Fan
2011 J jnl
An MCMC algorithm for detecting short adjacent repeats shared by multiple sequences.
Bioinform.
Qiwei Li, Xiaodan Fan, Tong Liang, Shuo-Yen Robert Li
2010 — conf
An Evolutionary Monte Carlo algorithm for identifying short adjacent repeats in multiple sequences.
BIBM
Jin Xu, Qiwei Li, Xiaodan Fan, Victor O. K. Li, Shuo-Yen Robert Li
2010 — conf
An automatic procedure to search highly repetitive sequences in genome as fluorescence in situ hybridization probes and its application on Brachypodium distachyon.
BIBM
Qiwei Li, Tong Liang, Xiaodan Fan, Chunhui Xu, Weichang Yu, Shuo-Yen Robert Li
2010 J jnl
BOOST: A fast approach to detecting gene-gene interactions in genome-wide case-control studies
CoRR
Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Xiaodan Fan, Nelson L. S. Tang, Weichuan Yu
2010 — conf
Bayesian Approach for Identifying Short Adjacent Repeats in Multiple Sequences.
BIOCOMP
Qiwei Li, Tong Liang, Shuo-Yen Robert Li, Xiaodan Fan
2007 J jnl
Statistical power of phylo-HMM for evolutionarily conserved element detection.
BMC Bioinform.
Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu
2003 J jnl
Identifying splicing sites in eukaryotic RNA: support vector machine approach.
Comput. Biol. Medicine
Ying-Fei Sun, Xiaodan Fan, Yan-Da Li