Xiaochen Bo - RankMe

103 papers B 4C 1Journal 77Unranked 21

Year	Rank	Type	Title / Venue / Authors
2026	—	`conf`	A 28nm Mode-Reconfigurable CAM-CIM Hybrid Complete 3-SAT Solver Supporting Conflict-Driven Clause Learning with 100% Solvability. ISSCC Zihan Wu, Xiyuan Tang, Lishan Lin, Youming Yang, Haoyang Luo, Bocheng Xu, Yitao Liang, Xiaochen Bo, Yuan Wang
2026	J	`jnl`	ALC-DRKG: an active learning-based framework for dynamic knowledge graph construction for drug repositioning. Inf. Process. Manag. Shuaibin Liu, Huiyan Xu, Xintao Wang, Peng Zan, Song He, Xiaochen Bo
2026	J	`jnl`	CompBind: Complex Guided Pretraining-Based Structure-Free Protein-Ligand Affinity Prediction. J. Chem. Inf. Model. Duoyun Yi, Yanpeng Zhao, Huiyan Xu, Yixin Zhang, Mengxuan Wan, Peng Zan, Song He, Xiaochen Bo
2026	J	`jnl`	MMPCS: multi-view molecular pretraining based on consistency information and specific information. Bioinform. Chenyang Xie, Yingying Song, Song He, Xiaochen Bo, Zhongnan Zhang
2026	J	`jnl`	MOCT: A Multi-Class Oblique Tree Algorithm for Synergistic Drug Combination Prediction. IEEE Trans. Comput. Biol. Bioinform. Zhikai Lin, Jing Chen, Lianlian Wu, Kunhong Liu, Yong Xu, Song He, Xiaochen Bo
2026	J	`jnl`	SHIFT-DRP: Dynamic Multi-Scale Active Learning for Drug Response Prediction. J. Chem. Inf. Model. Xintao Wang, Huiyan Xu, Yanpeng Zhao, Shuaibin Liu, Peng Zan, Song He, Xiaochen Bo
2026	J	`jnl`	SKADI: A 28-nm Complete K-SAT Solver Featuring Bidirectional In-Memory Deduction and Incremental Updating. IEEE J. Solid State Circuits Zihan Wu, Xiyuan Tang, Tao Zhang, Lishan Lin, Haoyang Luo, Bocheng Xu, Zhongyi Wu, Jiahao Song, Yitao Liang, Xiaochen Bo, Yuan Wang
2025	—	`conf`	37.5 SKADI: A 28nm Complete K-SAT Solver Featuring Dual-Path SRAM-Based Macro and Incremental Update with 100% Solvability. ISSCC Zihan Wu, Xiyuan Tang, Tao Zhang, Lishan Lin, Haoyang Luo, Bocheng Xu, Zhongyi Wu, Jiahao Song, Yitao Liang, Xiaochen Bo, Yuan Wang
2025	J	`jnl`	A Variation-Tolerant Continuous-Time Ising Machine With eDRAM-Based Spin Interaction and Leaked Negative Feedback Annealing. IEEE J. Solid State Circuits Zihan Wu, Jiahao Song, Xiyuan Tang, Bocheng Xu, Haoyang Luo, Youming Yang, Runsheng Wang, Xiaochen Bo, Yuan Wang
2025	J	`jnl`	A feature pair-based neural network embedded decision tree for synergistic drug combination prediction. Pattern Recognit. Jiayu Zou, Lianlian Wu, Kunhong Liu, Yong Xu, Song He, Xiaochen Bo
2025	J	`jnl`	DeepPFP: a multi-task-aware architecture for protein function prediction. Briefings Bioinform. Han Wang, Zilin Ren, Jinghong Sun, Yongbing Chen, Xiaochen Bo, Jiguo Xue, Jingyang Gao, Ming Ni
2025	B	`conf`	Geometric Diffusion Model Based on Stochastic Differential Equations for 3D Molecular Generation. IJCNN Xinyi Guan, Song He, Xiaochen Bo, Zhongnan Zhang
2025	J	`jnl`	IECata: interpretable bilinear attention network and evidential deep learning improve the catalytic efficiency prediction of enzymes. Briefings Bioinform. Jingjing Wang, Yanpeng Zhao, Zhijiang Yang, Ge Yao, Penggang Han, Jiajia Liu, Chang Chen, Peng Zan, Xiukun Wan, Xiaochen Bo, Hui Jiang
2025	J	`jnl`	Learning generic and specific prompts with contrastive constraints for multi-task visual scene understanding. Neurocomputing Tianyu Han, Zhimin Xu, Wanying Li, Haohao Hu, Xinxin He, Song He, Peng Zan, Xiaochen Bo
2025	J	`jnl`	Multi-task multi-view and iterative error-correcting random forest for acute toxicity prediction. Expert Syst. Appl. Jie Gao, Lianlian Wu, Guangyi Lin, Jiayu Zou, Bowei Yan, Kunhong Liu, Song He, Xiaochen Bo
2025	J	`jnl`	RL-GCL: Reinforcement Learning-Guided Contrastive Learning for molecular property prediction. Inf. Fusion Yanran Fu, Junshan Han, Yong Xu, Kunhong Liu, Jiang Lu, Song He, Xiaochen Bo
2025	J	`jnl`	The Dance of Atoms-De Novo Protein Design with Diffusion Model. CoRR Yujie Qin, Ming He, Changyong Yu, Ming Ni, Xian Liu, Xiaochen Bo
2024	J	`jnl`	A hierarchical attention network integrating multi-scale relationship for drug response prediction. Inf. Fusion Xiaoqi Wang, Yuqi Wen, Yixin Zhang, Chong Dai, Yaning Yang, Xiaochen Bo, Song He, Shaoliang Peng
2024	J	`jnl`	An Ensemble Cascade Forest-Based Framework for Multi-Omics Drug Response and Synergy Prediction. Adv. Intell. Syst. Ruijiang Li, Binsheng Sui, Dongjin Leng, Song He, Kunhong Liu, Xiaochen Bo
2024	—	`conf`	CPDT: A Novel Cluster-based Paired Decision Tree for Identifying Biomedical Entity Interactions. BIBM Jiayu Zou, Lianlian Wu, Weiping Lin, Kunhong Liu, Yong Xu, Song He, Xiaochen Bo
2024	J	`jnl`	Effectiveness of machine learning at modeling the relationship between Hi-C data and copy number variation. Quant. Biol. Yuyang Wang, Yu Sun, Zeyu Liu, Bijia Chen, Hebing Chen, Chao Ren, Xuanwei Lin, Pengzhen Hu, Peiheng Jia, Xiang Xu, Kang Xu, Ximeng Liu, Hao Li, Xiaochen Bo
2024	—	`conf`	Exploring Optimal Transport-Based Multi-Grained Alignments for Text-Molecule Retrieval. BIBM Zijun Min, Bingshuai Liu, Liang Zhang, Jia Song, Jinsong Su, Song He, Xiaochen Bo
2024	J	`jnl`	Exploring Optimal Transport-Based Multi-Grained Alignments for Text-Molecule Retrieval. CoRR Zijun Min, Bingshuai Liu, Liang Zhang, Jia Song, Jinsong Su, Song He, Xiaochen Bo
2024	J	`jnl`	Multi-view uncertainty deep forest: An innovative deep forest equipped with uncertainty estimation for drug-induced liver injury prediction. Inf. Sci. Qiong Tan, Yuqi Wen, Yong Xu, Kunhong Liu, Song He, Xiaochen Bo
2024	J	`jnl`	NASTRA: accurate analysis of short tandem repeat markers by nanopore sequencing with repeat-structure-aware algorithm. Briefings Bioinform. Zilin Ren, Jiarong Zhang, Yixiang Zhang, Tingting Yang, Pingping Sun, Jiguo Xue, Xiaochen Bo, Bo Zhou, Jiangwei Yan, Ming Ni
2024	J	`jnl`	ReadCurrent: a VDCNN-based tool for fast and accurate nanopore selective sequencing. Briefings Bioinform. Kechen Fan, Mengfan Li, Jiarong Zhang, Zihan Xie, Daguang Jiang, Xiaochen Bo, Dongsheng Zhao, Shenghui Shi, Ming Ni
2024	J	`jnl`	Reusability report: exploring the utility of variational graph encoders for predicting molecular toxicity in drug design. Nat. Mac. Intell. Ruijiang Li, Jiang Lu, Ziyi Liu, Duoyun Yi, Mengxuan Wan, Yixin Zhang, Peng Zan, Song He, Xiaochen Bo
2024	J	`jnl`	SEPDB: a database of secreted proteins. Database J. Biol. Databases Curation Ruiqing Wang, Chao Ren, Tian Gao, Hao Li, Xiaochen Bo, Dahai Zhu, Dan Zhang, Hebing Chen, Yong Zhang
2024	J	`jnl`	Stratifying TAD boundaries pinpoints focal genomic regions of regulation, damage, and repair. Briefings Bioinform. Bijia Chen, Chao Ren, Zhangyi Ouyang, Jingxuan Xu, Kang Xu, Yaru Li, Hejiang Guo, Xuemei Bai, Mengge Tian, Xiang Xu, Yuyang Wang, Hao Li, Xiaochen Bo, Hebing Chen
2024	—	`conf`	Towards Cross-Modal Text-Molecule Retrieval with Better Modality Alignment. BIBM Jia Song, Wanru Zhuang, Yujie Lin, Liang Zhang, Chunyan Li, Jinsong Su, Song He, Xiaochen Bo
2024	J	`jnl`	Towards Cross-Modal Text-Molecule Retrieval with Better Modality Alignment. CoRR Jia Song, Wanru Zhuang, Yujie Lin, Liang Zhang, Chunyan Li, Jinsong Su, Song He, Xiaochen Bo
2024	J	`jnl`	scDAC: deep adaptive clustering of single-cell transcriptomic data with coupled autoencoder and Dirichlet process mixture model. Bioinform. Sijing An, Jinhui Shi, Runyan Liu, Yaowen Chen, Jing Wang, Shuofeng Hu, Xinyu Xia, Guohua Dong, Xiaochen Bo, Zhen He, Xiaomin Ying
2023	J	`jnl`	3D genomic organization in cancers. Quant. Biol. Junting Wang, Huan Tao, Hao Li, Xiaochen Bo, Hebing Chen
2023	J	`jnl`	A Genetic Algorithm-Based Ensemble Learning Framework for Drug Combination Prediction. J. Chem. Inf. Model. Lianlian Wu, Xiaona Ye, Yixin Zhang, Jie Gao, Zhikai Lin, Binsheng Sui, Yuqi Wen, Qingqiang Wu, Kunhong Liu, Song He, Xiaochen Bo
2023	—	`conf`	A Multi-View Learning-Based Bayesian Ruleset Extraction Algorithm For Accurate Hepatotoxicity Prediction. BIBM Siyang Chen, Lianlian Wu, Yong Xu, Kunhong Liu, Song He, Xiaochen Bo
2023	J	`jnl`	COMMO: a web server for the identification and analysis of consensus gene modules across multiple methods. Bioinform. Xiaojing Wu, Mingfei Han, Xinyu Song, Song He, Xiaochen Bo, Yunping Zhu
2023	J	`jnl`	Deep Learning-Based Multiomics Data Integration Methods for Biomedical Application. Adv. Intell. Syst. Yuqi Wen, Linyi Zheng, Dongjin Leng, Chong Dai, Jing Lu, Zhongnan Zhang, Song He, Xiaochen Bo
2023	—	`conf`	Drug-target and Drug-disease Association Prediction based on Drug-target-disease Network and Multi-task Learning. BIBM Binyu Wang, Yunhao Zhang, Hongyan Ye, Lianlian Wu, Song He, Xiaochen Bo, Zhongnan Zhang
2023	J	`jnl`	EDST: a decision stump based ensemble algorithm for synergistic drug combination prediction. BMC Bioinform. Jing Chen, Lianlian Wu, Kunhong Liu, Yong Xu, Song He, Xiaochen Bo
2023	J	`jnl`	Effective low-light image enhancement with multiscale and context learning network. Multim. Tools Appl. Qiao Li, Bin Jiang, Xiaochen Bo, Chao Yang, Xu Wu
2023	J	`jnl`	GADRP: graph convolutional networks and autoencoders for cancer drug response prediction. Briefings Bioinform. Hong Wang, Chong Dai, Yuqi Wen, Xiaoqi Wang, Wenjuan Liu, Song He, Xiaochen Bo, Shaoliang Peng
2023	B	`conf`	HSGCL-DTA: Hybrid-scale Graph Contrastive Learning based Drug-Target Binding Affinity Prediction. ICTAI Hongyan Ye, Yingying Song, Binyu Wang, Lianlian Wu, Song He, Xiaochen Bo, Zhongnan Zhang
2023	—	`conf`	MoSCHG: Multi-omics Single-cell Classification based on Heterogeneous Graphs and Supervised Contrastive Learning. BIBM Xinjian Chen, Chenyang Xie, Yunhao Zhang, Song He, Xiaochen Bo, Zhongnan Zhang
2023	J	`jnl`	TOXRIC: a comprehensive database of toxicological data and benchmarks. Nucleic Acids Res. Lianlian Wu, Bowei Yan, Junshan Han, Ruijiang Li, Jian Xiao, Song He, Xiaochen Bo
2022	—	`conf`	A Multi-View Learning-Based Rule Extraction Algorithm For Accurate Hepatotoxicity Prediction. BIBM Yuting Zhong, Bowei Yan, Kunhong Liu, Yong Xu, Song He, Xiaochen Bo
2022	J	`jnl`	A Yeast BiFC-seq Method for Genome-wide Interactome Mapping. Genom. Proteom. Bioinform. Limin Shang, Yuehui Zhang, Yuchen Liu, Chaozhi Jin, Yanzhi Yuan, Chunyan Tian, Ming Ni, Xiaochen Bo, Li Zhang, Dong Li, Fuchu He, Jian Wang
2022	J	`jnl`	An enhanced cascade-based deep forest model for drug combination prediction. Briefings Bioinform. Weiping Lin, Lianlian Wu, Yixin Zhang, Yuqi Wen, Bowei Yan, Chong Dai, Kun-Hong Liu, Song He, Xiaochen Bo
2022	J	`jnl`	Computational methods, databases and tools for synthetic lethality prediction. Briefings Bioinform. Jing Wang, Qinglong Zhang, Junshan Han, Yanpeng Zhao, Caiyun Zhao, Bowei Yan, Chong Dai, Lianlian Wu, Yuqi Wen, Yixin Zhang, Dongjin Leng, Zhongming Wang, Xiaoxi Yang, Song He, Xiaochen Bo
2022	J	`jnl`	DTI-HETA: prediction of drug-target interactions based on GCN and GAT on heterogeneous graph. Briefings Bioinform. Kanghao Shao, Yunhao Zhang, Yuqi Wen, Zhongnan Zhang, Song He, Xiaochen Bo
2022	J	`jnl`	ExpressVis: a biologist-oriented interactive web server for exploring multi-omics data. Nucleic Acids Res. Xian Liu, Kaikun Xu, Xin Tao, Ronghua Yin, Guangming Ren, Miao Yu, Changyan Li, Hui Chen, Ke Zhao, Shensi Xiang, Huiying Gao, Xiaochen Bo, Cheng Chang, Xiaoming Yang
2022	J	`jnl`	Graph Neural Networks for Double-Strand DNA Breaks Prediction. CoRR Xu Wang, Huan Zhao, Weiwei Tu, Hao Li, Yu Sun, Xiaochen Bo
2022	J	`jnl`	Inferring transcription factor regulatory networks from single-cell ATAC-seq data based on graph neural networks. Nat. Mach. Intell. Hao Li, Yu Sun, Hao Hong, Xin Huang, Huan Tao, Qiya Huang, Longteng Wang, Kang Xu, Jingbo Gan, Hebing Chen, Xiaochen Bo
2022	J	`jnl`	Machine learning methods, databases and tools for drug combination prediction. Briefings Bioinform. Lianlian Wu, Yuqi Wen, Dongjin Leng, Qinglong Zhang, Chong Dai, Zhongming Wang, Ziqi Liu, Bowei Yan, Yixin Zhang, Jing Wang, Song He, Xiaochen Bo
2022	J	`jnl`	PLA-MoRe: A Protein-Ligand Binding Affinity Prediction Model via Comprehensive Molecular Representations. J. Chem. Inf. Model. Qingyu Li, Xiaochang Zhang, Lianlian Wu, Xiaochen Bo, Song He, Shengqi Wang
2022	J	`jnl`	Systematic optimization of host-directed therapeutic targets and preclinical validation of repositioned antiviral drugs. Briefings Bioinform. Dafei Xie, Song He, Lu Han, Lianlian Wu, Hai Huang, Huan Tao, Pingkun Zhou, Xunlong Shi, Hui Bai, Xiaochen Bo
2021	—	`conf`	A Metagraph-Based Model for Predicting Drug-Target Interaction on Heterogeneous Network. ICANN (1) Peng Ke, Yuqi Wen, Zhongnan Zhang, Song He, Xiaochen Bo
2021	J	`jnl`	COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data. PLoS Comput. Biol. Song He, Xinyu Song, Xiaoxi Yang, Jijun Yu, Yuqi Wen, Lianlian Wu, Bowei Yan, Jiannan Feng, Xiaochen Bo
2021	—	`conf`	Drug-target interaction prediction based on nonnegative and self-representative matrix factorization. BIBM Yihua Ye, Yuxin Chen, Zhongnan Zhang, Yuqi Wen, Song He, Xiaochen Bo
2021	J	`jnl`	Multi-dimensional data integration algorithm based on random walk with restart. BMC Bioinform. Yuqi Wen, Xinyu Song, Bowei Yan, Xiaoxi Yang, Lianlian Wu, Dongjin Leng, Song He, Xiaochen Bo
2021	J	`jnl`	NegStacking: Drug-Target Interaction Prediction Based on Ensemble Learning and Logistic Regression. IEEE ACM Trans. Comput. Biol. Bioinform. Jie Yang, Song He, Zhongnan Zhang, Xiaochen Bo
2021	J	`jnl`	Spatial density of open chromatin: an effective metric for the functional characterization of topologically associated domains. Briefings Bioinform. Shuai Jiang, Hao Li, Hao Hong, Guifang Du, Xin Huang, Yu Sun, Junting Wang, Huan Tao, Kang Xu, Cheng Li, Yang Chen, Hebing Chen, Xiaochen Bo
2021	J	`jnl`	Synthetic Lethal Interactions Prediction Based on Multiple Similarity Measures Fusion. J. Comput. Sci. Technol. Lianlian Wu, Yuqi Wen, Xiaoxi Yang, Bowei Yan, Song He, Xiaochen Bo
2020	B	`conf`	DTIGCCN: Prediction of drug-target interactions based on GCN and CNN. ICTAI Kanghao Shao, Zhongnan Zhang, Song He, Xiaochen Bo
2020	J	`jnl`	DeepHiC: A generative adversarial network for enhancing Hi-C data resolution. PLoS Comput. Biol. Hao Hong, Shuai Jiang, Hao Li, Guifang Du, Yu Sun, Huan Tao, Cheng Quan, Chenghui Zhao, Ruijiang Li, Wanying Li, Xiaoyao Yin, Yangchen Huang, Cheng Li, Hebing Chen, Xiaochen Bo
2020	J	`jnl`	Domain-adversarial multi-task framework for novel therapeutic property prediction of compounds. Bioinform. Lingwei Xie, Song He, Zhongnan Zhang, Kunhui Lin, Xiaochen Bo, Shu Yang, Boyuan Feng, Kun Wan, Kang Yang, Jie Yang, Yufei Ding
2020	J	`jnl`	New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform. Briefings Bioinform. Hebing Chen, Zhuo Zhang, Shuai Jiang, Ruijiang Li, Wanying Li, Chenghui Zhao, Hao Hong, Xin Huang, Hao Li, Xiaochen Bo
2020	J	`jnl`	PIMD: An Integrative Approach for Drug Repositioning Using Multiple Characterization Fusion. Genom. Proteom. Bioinform. Song He, Yuqi Wen, Xiaoxi Yang, Zhen Liu, Xinyu Song, Xin Huang, Xiaochen Bo
2019	J	`jnl`	A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data. Briefings Bioinform. Zhuo Zhang, Hao Li, Shuai Jiang, Ruijiang Li, Wanying Li, Hebing Chen, Xiaochen Bo
2019	J	`jnl`	LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs. Database J. Biol. Databases Curation Gaole An, Jiaqi Sun, Chao Ren, Zhangyi Ouyang, Lingyun Zhu, Xiaochen Bo, Shaoliang Peng, Wenjie Shu
2019	J	`jnl`	Stable H3K4me3 is associated with transcription initiation during early embryo development. Bioinform. Xin Huang, Xudong Gao, Wanying Li, Shuai Jiang, Ruijiang Li, Hao Hong, Chenghui Zhao, Pingkun Zhou, Hebing Chen, Xiaochen Bo, Hao Li
2018	—	`conf`	DTI-RCNN: New Efficient Hybrid Neural Network Model to Predict Drug-Target Interactions. ICANN (1) Xiaoping Zheng, Song He, Xinyu Song, Zhongnan Zhang, Xiaochen Bo
2018	J	`jnl`	Deep Learning and Its Applications in Biomedicine. Genom. Proteom. Bioinform. Chensi Cao, Feng Liu, Hai Tan, Deshou Song, Wenjie Shu, Weizhong Li, Yiming Zhou, Xiaochen Bo, Zhi Xie
2018	J	`jnl`	Domain-Adversarial Multi-Task Framework for Novel Therapeutic Property Prediction of Compounds. CoRR Lingwei Xie, Song He, Shu Yang, Boyuan Feng, Kun Wan, Zhongnan Zhang, Xiaochen Bo, Yufei Ding
2018	—	`conf`	Prediction of DTIs for high-dimensional and class-imbalanced data based on CGAN. BIBM Kang Yang, Zhongnan Zhang, Song He, Xiaochen Bo
2018	—	`conf`	paraSNF: An Parallel Approach for Large-Scale Similarity Network Fusion. ACA Xiaolong Shen, Song He, Minquan Fang, Yuqi Wen, Xiaochen Bo, Yong Dou
2017	J	`jnl`	3DSNP: a database for linking human noncoding SNPs to their three-dimensional interacting genes. Nucleic Acids Res. Yiming Lu, Cheng Quan, Hebing Chen, Xiaochen Bo, Chenggang Zhang
2017	J	`jnl`	BiRen: predicting enhancers with a deep-learning-based model using the DNA sequence alone. Bioinform. Bite Yang, Feng Liu, Chao Ren, Zhangyi Ouyang, Ziwei Xie, Xiaochen Bo, Wenjie Shu
2017	—	`conf`	Drug - target interaction prediction with a deep-learning-based model. BIBM Lingwei Xie, Zhongnan Zhang, Song He, Xiaochen Bo, Xinyu Song
2017	J	`jnl`	Exploring spatially adjacent TFBS-clustered regions with Hi-C data. Bioinform. Hebing Chen, Shuai Jiang, Zhuo Zhang, Hao Li, Yiming Lu, Xiaochen Bo
2017	J	`jnl`	NFPscanner: a webtool for knowledge-based deciphering of biomedical networks. BMC Bioinform. Wenjian Xu, Yang Cao, Ziwei Xie, Haochen He, Song He, Hao Hong, Xiaochen Bo, Fei Li
2016	J	`jnl`	ICM: a web server for integrated clustering of multi-dimensional biomedical data. Nucleic Acids Res. Song He, Haochen He, Wenjian Xu, Xin Huang, Shuai Jiang, Fei Li, Fuchu He, Xiaochen Bo
2016	J	`jnl`	RevEcoR: an R package for the reverse ecology analysis of microbiomes. BMC Bioinform. Yang Cao, Yuanyuan Wang, Xiaofei Zheng, Fei Li, Xiaochen Bo
2015	J	`jnl`	EHFPI: a database and analysis resource of essential host factors for pathogenic infection. Nucleic Acids Res. Yang Liu, Dafei Xie, Lu Han, Hui Bai, Fei Li, Shengqi Wang, Xiaochen Bo
2015	B	`conf`	New insights into the landscape relationships of host response to bacterial pathogens. IJCNN Xiaoyao Yin, Lu Han, Hui Bai, Xiaochen Bo, Yun Bai, Cong Niu, Naiyang Guan, Zhigang Luo
2014	J	`jnl`	ExpTreeDB: Web-based query and visualization of manually annotated gene expression profiling experiments of human and mouse from GEO. Bioinform. Ming Ni, Fuqiang Ye, Juanjuan Zhu, Zongwei Li, Shuai Yang, Bite Yang, Lu Han, Yongge Wu, Ying Chen, Fei Li, Shengqi Wang, Xiaochen Bo
2014	—	`conf`	Predicting drug side effects based on link prediction in bipartite network. BMEI Yifu Luo, Qijun Liu, Wenjian Wu, Fei Li, Xiaochen Bo
2013	J	`jnl`	Exploring the role of human miRNAs in virus-host interactions using systematic overlap analysis. Bioinform. Zhenpeng Li, Xiuliang Cui, Fei Li, Peng Li, Ming Ni, Shengqi Wang, Xiaochen Bo
2011	J	`jnl`	Characterization the regulation of herpesvirus miRNAs from the view of human protein interaction network. BMC Syst. Biol. Zhenpeng Li, Fei Li, Ming Ni, Peng Li, Xiaochen Bo, Shengqi Wang
2011	—	`conf`	Topology aware functional similarity of protein interaction networks based on gene ontology. EMBC Fei Li, Xiuliang Cui, Dafei Xie, Xiaochen Bo, Shengqi Wang
2010	J	`jnl`	GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinform. Guangchuang Yu, Fei Li, Yide Qin, Xiaochen Bo, Yibo Wu, Shengqi Wang
2010	J	`jnl`	PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks. Bioinform. Fei Li, Peng Li, Wenjian Xu, Yuxing Peng, Xiaochen Bo, Shengqi Wang
2009	—	`conf`	Dynamic Propagation Properties of Virus-Host Protein Interaction Network. IJCBS Fei Li, Yuxing Peng, Wenjian Xu, Peng Li, Xiaochen Bo
2009	J	`jnl`	EvoRSR: an integrated system for exploring evolution of RNA structural robustness. BMC Bioinform. Wenjie Shu, Ming Ni, Xiaochen Bo, Zhiqiang Zheng, Shengqi Wang
2009	—	`conf`	Optimizing Reference Gene Set for Inter-Chip Normalization Using Genetic Algorithm. BMEI Fei Li, Wenjian Xu, Peng Li, Xiaochen Bo, Yuxing Peng
2009	—	`conf`	Towards a Comprehensive HBV-Human Interaction Map. IJCBS Fei Li, Yuxing Peng, Wenjian Xu, Guangchuang Yu, Peng Li, Xiaochen Bo, Shengqi Wang
2008	J	`jnl`	A novel representation of RNA secondary structure based on element-contact graphs. BMC Bioinform. Wenjie Shu, Xiaochen Bo, Zhiqiang Zheng, Shengqi Wang
2007	J	`jnl`	RSRE: RNA structural robustness evaluator. Nucleic Acids Res. Wenjie Shu, Xiaochen Bo, Zhiqiang Zheng, Shengqi Wang
2006	J	`jnl`	AOBase: a database for antisense oligonucleotides selection and design. Nucleic Acids Res. Xiaochen Bo, Shaoke Lou, Daochun Sun, Jing Yang, Shengqi Wang
2006	J	`jnl`	RDMAS: a web server for RNA deleterious mutation analysis. BMC Bioinform. Wenjie Shu, Xiaochen Bo, Rujia Liu, Dongsheng Zhao, Zhiqiang Zheng, Shengqi Wang
2006	J	`jnl`	Selection of antisense oligonucleotides based on multiple predicted target mRNA structures. BMC Bioinform. Xiaochen Bo, Shaoke Lou, Daochun Sun, Wenjie Shu, Jing Yang, Shengqi Wang
2005	J	`jnl`	TargetFinder: a software for antisense oligonucleotide target site selection based on MAST and secondary structures of target mRNA. Bioinform. Xiaochen Bo, Shengqi Wang
2001	C	`conf`	Evaluation of the Image Degradation for a Typical Watermarking Algorithm in the Block-DCT Domain. ICICS Xiaochen Bo, Lincheng Shen, Wensen Chang
2001	—	`conf`	Sign Correlation Detector for Blind Image Watermarking in the DCT Domain. IEEE Pacific Rim Conference on Multimedia Xiaochen Bo, Lincheng Shen, Wensen Chang