Xiao Sun

41 papers Misc 1Journal 34Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
Decoding cancer heterogeneity through super-enhancer landscapes: from subtype discovery to therapeutic opportunity.
Briefings Bioinform.
Shuyang Cai, Zhenchang Wang, Xiao Sun, Hao Huang
2025 J jnl
G4SNVHunter: An R/Bioconductor Package for Evaluating SNV-Induced Disruption of G-Quadruplex Structures Leveraging the G4Hunter Algorithm.
PLoS Comput. Biol.
Rongxin Zhang, Wenyong Zhu, Ke Xiao, Jean-Louis Mergny, Xiao Sun
2023 J jnl
Improving the performance of single-cell RNA-seq data mining based on relative expression orderings.
Briefings Bioinform.
Yuanyuan Chen, Hao Zhang, Xiao Sun
2023 J jnl
scAnno: a deconvolution strategy-based automatic cell type annotation tool for single-cell RNA-sequencing data sets.
Briefings Bioinform.
Hongjia Liu, Huamei Li, Amit Sharma, Wenjuan Huang, Duo Pan, Yu Gu, Lu Lin, Xiao Sun, Hongde Liu
2022 J jnl
Predicting hormone receptors and PAM50 subtypes of breast cancer from multi-scale lesion images of DCE-MRI with transfer learning technique.
Comput. Biol. Medicine
Wenlong Ming, Fuyu Li, Yanhui Zhu, Yunfei Bai, Wanjun Gu, Yun Liu, Xiao Sun, Xiaoan Liu, Hongde Liu
2022 J jnl
Relating Translation Efficiency to Protein Networks Provides Evolutionary Insights in Shewanella and Its Implications for Extracellular Electron Transfer.
IEEE ACM Trans. Comput. Biol. Bioinform.
Dewu Ding, Xiao Sun
2021 J jnl
Classification of Mild Cognitive Impairment With Multimodal Data Using Both Labeled and Unlabeled Samples.
IEEE ACM Trans. Comput. Biol. Bioinform.
Shaoxun Yuan, Haitao Li, Jiansheng Wu, Xiao Sun
2021 J jnl
Sample-specific perturbation of gene interactions identifies breast cancer subtypes.
Briefings Bioinform.
Yuanyuan Chen, Yu Gu, Zixi Hu, Xiao Sun
2019 J jnl
A Comparative Study of Network Motifs in the Integrated Transcriptional Regulation and Protein Interaction Networks of Shewanella.
IEEE ACM Trans. Comput. Biol. Bioinform.
Dewu Ding, Xiao Sun
2019 J jnl
DNMHMM: An approach to identify the differential nucleosome regions in multiple cell types based on a Hidden Markov Model.
Biosyst.
Jiahao Xie, Yiran Cai, Huamei Li, Jiahui Wu, Xinlei Zhao, Kun Luo, Amit Sharma, Jianming Xie, Xiao Sun, Hongde Liu
2018 J jnl
Nucleosome Positioning of Intronless Genes in the Human Genome.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiangfei Cheng, Yue Hou, Yumin Nie, Yiru Zhang, Huan Huang, Hongde Liu, Xiao Sun
2018 J jnl
Prediction of microRNA-binding residues in protein using a Laplacian support vector machine based on sequence information.
J. Bioinform. Comput. Biol.
Xin Ma, Jing Guo, Xiao Sun
2017 J jnl
Histone modifications influence skipped exons inclusion.
J. Bioinform. Comput. Biol.
Yue Hou, Huan Huang, Wenqiao Hu, Hongde Liu, Xiao Sun
2016 J jnl
Combinatorial pooled sequencing: experiment design and decoding.
Quant. Biol.
Chang-Chang Cao, Xiao Sun
2016 J jnl
Comparison of the experimental methods in haplotype sequencing via next generation sequencing.
Quant. Biol.
Jing Tu, Na Lu, Mengqin Duan, An Ju, Xiao Sun, Zuhong Lu
2016 J jnl
Ehapp2: Estimate haplotype frequencies from pooled sequencing data with prior database information.
J. Bioinform. Comput. Biol.
Chang-Chang Cao, Xiao Sun
2015 J jnl
Accurate estimation of haplotype frequency from pooled sequencing data and cost-effective identification of rare haplotype carriers by overlapping pool sequencing.
Bioinform.
Chang-Chang Cao, Xiao Sun
2015 J jnl
DectICO: an alignment-free supervised metagenomic classification method based on feature extraction and dynamic selection.
BMC Bioinform.
Xiao Ding, Fudong Cheng, Chang-Chang Cao, Xiao Sun
2015 J jnl
PRBP: Prediction of RNA-Binding Proteins Using a Random Forest Algorithm Combined with an RNA-Binding Residue Predictor.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xin Ma, Jing Guo, Ke Xiao, Xiao Sun
2014 J jnl
Quantitative group testing-based overlapping pool sequencing to identify rare variant carriers.
BMC Bioinform.
Chang-Chang Cao, Cheng Li, Xiao Sun
2013 J jnl
Prioritization of Disease Susceptibility Genes Using LSM/SVD.
IEEE Trans. Biomed. Eng.
Lejun Gong, Ronggen Yang, Qin Yan, Xiao Sun
2013 J jnl
Target Identification and Target-centered Network Construction from Biomedical Literature.
J. Softw.
Lejun Gong, Yunyang Yan, Xiao Sun
2012 — conf
Next-generation sequencing data processing: Analysis of unmapped reads and extremely high mapped peaks.
BMEI
Jiao Chen, Zuolei Dai, Chang-Chang Cao, Qianqian Zhang, Hongde Liu, Xiao Sun
2012 J jnl
Nucleosome organization in sequences of alternative events in human genome.
Biosyst.
Huan Huang, Shuangxin Yu, Hongde Liu, Xiao Sun
2012 J jnl
Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xin Ma, Jing Guo, Hongde Liu, Jianming Xie, Xiao Sun
2011 J jnl
Role of 10-11 bp periodicities of eukaryotic DNA sequence in nucleosome positioning.
Biosyst.
Hongde Liu, Shuhai Lin, Zongwei Cai, Xiao Sun
2010 Misc conf
ATRMiner : A system for automatic biomedical named entities recognition.
ICNC
Lejun Gong, Xiao Sun
2010 — conf
Nucleosomes Are Well Positioned at Both Ends of Exons.
LSMS/ICSEE
Hongde Liu, Xiao Sun
2009 — conf
A Hybrid Approach for Biomedical Entity Name Recognition.
BMEI
Lejun Gong, Yi Yuan, You-Bing Wei, Xiao Sun
2009 J jnl
Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia.
BMC Bioinform.
Xinan Yang, Yong Huang, James L. Chen, Jianming Xie, Xiao Sun, Yves A. Lussier
2009 J jnl
Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature.
Bioinform.
Jiansheng Wu, Hongde Liu, Xueye Duan, Yan Ding, Hongtao Wu, Yunfei Bai, Xiao Sun
2009 — conf
SVM-Based Approach for Predicting DNA-Binding Residues in Proteins from Amino Acid Sequences.
IJCBS
Xin Ma, Jiansheng Wu, Hongde Liu, Xinan Yang, Jianming Xie, Xiao Sun
2008 J jnl
Comparability of gene expression in human blood, immune and carcinoma cells.
Appl. Math. Comput.
Xinan Yang, Xiao Sun, Jianming Xie, Zuhong Lu
2008 J jnl
Coronavirus phylogeny based on Base-Base Correlation.
Int. J. Bioinform. Res. Appl.
Zhihua Liu, Xiao Sun
2007 — conf
Informational Structure of Agrobacterium Tumefaciens C58 Genome.
LSMS (2)
Zhihua Liu, Xiao Sun
2007 J jnl
Meta-analysis of several gene lists for distinct types of cancer: A simple way to reveal common prognostic markers.
BMC Bioinform.
Xinan Yang, Xiao Sun
2007 J jnl
MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features.
Nucleic Acids Res.
Peng Jiang, Haonan Wu, Wenkai Wang, Wei Ma, Xiao Sun, Zuhong Lu
2007 J jnl
RF-DYMHC: detecting the yeast meiotic recombination hotspots and coldspots by random forest model using gapped dinucleotide composition features.
Nucleic Acids Res.
Peng Jiang, Haonan Wu, Jiawei Wei, Fei Sang, Xiao Sun, Zuhong Lu
2007 J jnl
RFRCDB-siRNA: Improved design of siRNAs by random forest regression model coupled with database searching.
Comput. Methods Programs Biomed.
Peng Jiang, Haonan Wu, Yao Da, Fei Sang, Jiawei Wei, Xiao Sun, Zuhong Lu
2007 — conf
Support Vector Machine for Prediction of DNA-Binding Domains in Protein-DNA Complexes.
LSMS (2)
Jiansheng Wu, Hongtao Wu, Hongde Liu, Haoyan Zhou, Xiao Sun
2006 J jnl
Support vector machine for classification of meiotic recombination hotspots and coldspots in Saccharomyces cerevisiaebased on codon composition.
BMC Bioinform.
Tong Zhou, Jianhong Weng, Xiao Sun, Zuhong Lu