Xiao-Fei Zhang

54 papers C 1Journal 48Unranked 5
YearRankTypeTitle / Venue / Authors
2024 J jnl
scDOT: enhancing single-cell RNA-Seq data annotation and uncovering novel cell types through multi-reference integration.
Briefings Bioinform.
Yi-Xuan Xiong, Xiao-Fei Zhang
2023 J jnl
Cell-type annotation with accurate unseen cell-type identification using multiple references.
PLoS Comput. Biol.
Yi-Xuan Xiong, Meng-Guo Wang, Luonan Chen, Xiao-Fei Zhang
2023 J jnl
EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning.
Bioinform.
Jia-Juan Tu, Hui-Sheng Li, Hong Yan, Xiao-Fei Zhang
2023 J jnl
scTSSR2: Imputing Dropout Events for Single-Cell RNA Sequencing Using Fast Two-Side Self-Representation.
IEEE ACM Trans. Comput. Biol. Bioinform.
Bo Li, Ke Jin, Le Ou-Yang, Hong Yan, Xiao-Fei Zhang
2022 J jnl
Identifying Gene Network Rewiring Based on Partial Correlation.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yuting Tan, Le Ou-Yang, Xingpeng Jiang, Hong Yan, Xiao-Fei Zhang
2022 J jnl
Imputing dropouts for single-cell RNA sequencing based on multi-objective optimization.
Bioinform.
Ke Jin, Bo Li, Hong Yan, Xiao-Fei Zhang
2022 J jnl
Inferring Gene Co-Expression Networks by Incorporating Prior Protein-Protein Interaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Meng-Guo Wang, Le Ou-Yang, Hong Yan, Xiao-Fei Zhang
2022 J jnl
scDEA: differential expression analysis in single-cell RNA-sequencing data via ensemble learning.
Briefings Bioinform.
Hui-Sheng Li, Le Ou-Yang, Yuan Zhu, Hong Yan, Xiao-Fei Zhang
2021 J jnl
A Joint Graphical Model for Inferring Gene Networks Across Multiple Subpopulations and Data Types.
IEEE Trans. Cybern.
Xiao-Fei Zhang, Le Ou-Yang, Ting Yan, Xiaohua Tony Hu, Hong Yan
2021 J jnl
Differential network analysis by simultaneously considering changes in gene interactions and gene expression.
Bioinform.
Jia-Juan Tu, Le Ou-Yang, Yuan Zhu, Hong Yan, Hong Qin, Xiao-Fei Zhang
2021 J jnl
EnTSSR: A Weighted Ensemble Learning Method to Impute Single-Cell RNA Sequencing Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Fan Lu, Yilong Lin, Chongbin Yuan, Xiao-Fei Zhang, Le Ou-Yang
2021 — conf
Intermittent Demand of Spare parts based on Modem Technology.
EITCE
Xi Ren, Xiao-Fei Zhang
2021 J jnl
Time-Varying Differential Network Analysis for Revealing Network Rewiring over Cancer Progression.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ting Xu, Le Ou-Yang, Hong Yan, Xiao-Fei Zhang
2021 J jnl
WDNE: an integrative graphical model for inferring differential networks from multi-platform gene expression data with missing values.
Briefings Bioinform.
Le Ou-Yang, Dehan Cai, Xiao-Fei Zhang, Hong Yan
2020 J jnl
A graph regularized generalized matrix factorization model for predicting links in biomedical bipartite networks.
Bioinform.
Zi-Chao Zhang, Xiao-Fei Zhang, Min Wu, Le Ou-Yang, Xing-Ming Zhao, Xiaoli Li
2020 J jnl
Differential Network Analysis via Weighted Fused Conditional Gaussian Graphical Model.
IEEE ACM Trans. Comput. Biol. Bioinform.
Le Ou-Yang, Xiao-Fei Zhang, Xiaohua Hu, Hong Yan
2020 J jnl
Identifying Gene Network Rewiring Using Robust Differential Graphical Model with Multivariate $t$t-Distribution.
IEEE ACM Trans. Comput. Biol. Bioinform.
Rui Yuan, Le Ou-Yang, Xiaohua Hu, Xiao-Fei Zhang
2020 J jnl
Joint reconstruction of multiple gene networks by simultaneously capturing inter-tumor and intra-tumor heterogeneity.
Bioinform.
Jia-Juan Tu, Le Ou-Yang, Hong Yan, Xiao-Fei Zhang, Hong Qin
2020 — conf
Methods of High Precision Time-Interval Measurement.
EITCE
Ren Xi, Xiao-Fei Zhang
2020 J jnl
Sparse regularized low-rank tensor regression with applications in genomic data analysis.
Pattern Recognit.
Le Ou-Yang, Xiao-Fei Zhang, Hong Yan
2020 J jnl
scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation.
Bioinform.
Ke Jin, Le Ou-Yang, Xing-Ming Zhao, Hong Yan, Xiao-Fei Zhang
2019 J jnl
DiffNetFDR: differential network analysis with false discovery rate control.
Bioinform.
Xiao-Fei Zhang, Le Ou-Yang, Shuo Yang, Xiaohua Hu, Hong Yan
2019 J jnl
EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning.
Bioinform.
Xiao-Fei Zhang, Le Ou-Yang, Shuo Yang, Xing-Ming Zhao, Xiaohua Hu, Hong Yan
2019 J jnl
Inferring Gene Network Rewiring by Combining Gene Expression and Gene Mutation Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jia-Juan Tu, Le Ou-Yang, Xiaohua Hu, Xiao-Fei Zhang
2019 J jnl
Joint Learning of Multiple Differential Networks With Latent Variables.
IEEE Trans. Cybern.
Le Ou-Yang, Xiao-Fei Zhang, Xing-Ming Zhao, Debby Dan Wang, Fu Lee Wang, Baiying Lei, Hong Yan
2018 J jnl
DiffGraph: an R package for identifying gene network rewiring using differential graphical models.
Bioinform.
Xiao-Fei Zhang, Le Ou-Yang, Shuo Yang, Xiaohua Hu, Hong Yan
2018 J jnl
Identifying Gene Network Rewiring by Integrating Gene Expression and Gene Network Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ting Xu, Le Ou-Yang, Xiaohua Hu, Xiao-Fei Zhang
2017 J jnl
A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
BMC Bioinform.
Le Ou-Yang, Hong Yan, Xiao-Fei Zhang
2017 J jnl
Energy-efficient resource allocation for multiuser OFDMA system based on hybrid genetic simulated annealing.
Soft Comput.
Lei Xu, Xun-zhao Zhou, Qianmu Li, Xiao-Fei Zhang
2017 J jnl
Incorporating prior information into differential network analysis using non-paranormal graphical models.
Bioinform.
Xiao-Fei Zhang, Le Ou-Yang, Hong Yan
2017 J jnl
Localized modes of the (n+1)-dimensional Schrödinger equation with power-law nonlinearities in PT-symmetric potentials.
Commun. Nonlinear Sci. Numer. Simul.
Chao-Qing Dai, Xiao-Fei Zhang, Yan Fan, Liang Chen
2017 J jnl
Node-based differential network analysis in genomics.
Comput. Biol. Chem.
Xiao-Fei Zhang, Le Ou-Yang, Hong Yan
2016 J jnl
A two-layer integration framework for protein complex detection.
BMC Bioinform.
Le Ou-Yang, Min Wu, Xiao-Fei Zhang, Dao-Qing Dai, Xiaoli Li, Hong Yan
2016 J jnl
Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks.
BMC Bioinform.
Xiao-Fei Zhang, Le Ou-Yang, Dao-Qing Dai, Meng-Yun Wu, Yuan Zhu, Hong Yan
2016 — conf
Identifying protein complexes via multi-network clustering.
BIBM
Le Ou-Yang, Hong Yan, Xiao-Fei Zhang
2016 J jnl
Protein complex detection based on partially shared multi-view clustering.
BMC Bioinform.
Le Ou-Yang, Xiao-Fei Zhang, Dao-Qing Dai, Meng-Yun Wu, Yuan Zhu, Zhiyong Liu, Hong Yan
2016 J jnl
Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer.
BMC Bioinform.
Meng-Yun Wu, Xiao-Fei Zhang, Dao-Qing Dai, Le Ou-Yang, Yuan Zhu, Hong Yan
2015 J jnl
Detecting Protein Complexes from Signed Protein-Protein Interaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Le Ou-Yang, Dao-Qing Dai, Xiao-Fei Zhang
2015 J jnl
Determining minimum set of driver nodes in protein-protein interaction networks.
BMC Bioinform.
Xiao-Fei Zhang, Le Ou-Yang, Yuan Zhu, Meng-Yun Wu, Dao-Qing Dai
2014 J jnl
Detecting overlapping protein complexes based on a generative model with functional and topological properties.
BMC Bioinform.
Xiao-Fei Zhang, Dao-Qing Dai, Le Ou-Yang, Hong Yan
2014 J jnl
Detecting temporal protein complexes from dynamic protein-protein interaction networks.
BMC Bioinform.
Le Ou-Yang, Dao-Qing Dai, Xiaoli Li, Min Wu, Xiao-Fei Zhang, Peng Yang
2014 J jnl
Multi-model adaptive control based on fuzzy neural networks.
J. Intell. Fuzzy Syst.
Xiaoli Li, Xiao-Fei Zhang, Chao Jia, De-Xin Liu
2013 J jnl
Identifying Spurious Interactions and Predicting Missing Interactions in the Protein-Protein Interaction Networks via a Generative Network Model.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yuan Zhu, Xiao-Fei Zhang, Dao-Qing Dai, Meng-Yun Wu
2013 J jnl
Structured Sparse Error Coding for Face Recognition With Occlusion.
IEEE Trans. Image Process.
Xiao-Xin Li, Dao-Qing Dai, Xiao-Fei Zhang, Chuan-Xian Ren
2012 J jnl
A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiao-Fei Zhang, Dao-Qing Dai
2012 J jnl
Biomarker Identification and Cancer Classification Based on Microarray Data Using Laplace Naive Bayes Model with Mean Shrinkage.
IEEE ACM Trans. Comput. Biol. Bioinform.
Meng-Yun Wu, Dao-Qing Dai, Yu Shi, Hong Yan, Xiao-Fei Zhang
2012 J jnl
Protein Complexes Discovery Based on Protein-Protein Interaction Data via a Regularized Sparse Generative Network Model.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiao-Fei Zhang, Dao-Qing Dai, Xiao-Xin Li
2011 J jnl
Effect of superficial insulation on roller-compacted concrete dams in cold regions.
Adv. Eng. Softw.
Xiao-Fei Zhang, Shouyi Li, Yan-long Li, Yao Ge, Hui Li
2011 — conf
Face recognition with continuous occlusion using partially iteratively reweighted sparse coding.
ACPR
Xiao-Xin Li, Dao-Qing Dai, Xiao-Fei Zhang, Chuan-Xian Ren
2010 J jnl
A seepage computational model of face slab cracks based on equi-width joint constant flow.
Adv. Eng. Softw.
Shouyi Li, Yan-long Li, Zheng Si, Xiao-Fei Zhang
2009 J jnl
Optimization of geometric shape of Xiamen arch dam.
Adv. Eng. Softw.
Xiao-Fei Zhang, Shouyi Li, Yaolong Chen
2009 J jnl
The development and verification of relocating mesh method for the computation of temperature field of RCC dam.
Adv. Eng. Softw.
Xiao-Fei Zhang, Shouyi Li, Yaolong Chen, Junrui Chai
2007 — conf
A Multilayered Bilingual Word-Alignment Algorithm.
ALPIT
Ke-liang Zhang, Xiao-Fei Zhang, He-yan Huang
2006 C conf
Translation & Transform Algorithm of Query Sentence in Cross-Language Information Retrieval.
PACLIC
Xiao-Fei Zhang, Ke-liang Zhang, He-yan Huang