Xianjun Shen - RankMe

67 papers C 1Misc 4Journal 19Unranked 43

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A Novel Drug Repositioning Method Using Meta-Path Aggregating via Hierarchical Attention Mechanism. IEEE Trans. Comput. Biol. Bioinform. Yue Huang, Dandan Li, Weizhong Zhao, Xianjun Shen
2026	J	`jnl`	A Novel Dual-Attention Deep Neural Network With Multi-Scale Fusion Feature Processing for Predicting Transcription Factor Binding Sites. IEEE J. Biomed. Health Informatics Yuechuan Dai, Xianjun Shen, Weizhong Zhao, Xiaohua Hu
2025	—	`conf`	Dual-Stream Hierarchical Mixed-Routing Graph Attention Network Integrating ReAct Agent-Driven Embeddings for Phage-Host Interaction Prediction. BIBM Song Jiang, Yue Huang, Xianjun Shen, Weizhong Zhao
2025	—	`conf`	Frequency-Adaptive Analysis and Peak-Guided Attention for Drug-Target Interaction Prediction. BIBM Yu Du, Song Jiang, Xianjun Shen, Weizhong Zhao
2024	—	`conf`	A Multimodal Joint Representation Framework for Microbe-drug Association Prediction. BIBM Ruizhe Zhang, Yiting Shen, Chenlian Zhou, Weizhong Zhao, Xianjun Shen
2024	—	`conf`	A Novel Combined Embedding Model Based on Heterogeneous Network for Inferring Microbe-Metabolite Interactions. ISBRA (1) Xinzi Chen, Pei Li, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen
2024	—	`conf`	Predicting Microbe-Disease Association Based on Enhanced Relational Graph Convolutional Networks. BIBM Song Jiang, Haodong Wang, Yue Huang, Weizhong Zhao, Xianjun Shen
2024	J	`jnl`	Prediction of Drug-Disease Associations Based on Multi-Kernel Deep Learning Method in Heterogeneous Graph Embedding. IEEE ACM Trans. Comput. Biol. Bioinform. Dandan Li, Zhen Xiao, Han Sun, Xingpeng Jiang, Weizhong Zhao, Xianjun Shen
2023	—	`conf`	An Effective Microbial-drug Relation Extraction Model Based on Dual Graph Convolutional Networks. BIBM Ruizhe Zhang, Dandan Li, Ying Xiao, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen
2023	J	`jnl`	An Effective Model for Predicting Phage-Host Interactions Via Graph Embedding Representation Learning With Multi-Head Attention Mechanism. IEEE J. Biomed. Health Informatics Yue Wang, Han Sun, Haodong Wang, Dandan Li, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen
2023	—	`conf`	Counterfactual Inference-based Data Augmentation for Drug-side effect Associations Prediction. BIBM Wenjie Yao, Weizhong Zhao, Xiaowei Xu, Xingpeng Jiang, Xianjun Shen, Tingting He
2023	—	`conf`	Effective Drug Repositioning with a Novel Negative Sample Selection Algorithm. BIBM Shengwei Ye, Weizhong Zhao, Xiaowei Xu, Xianjun Shen, Xingpeng Jiang, Tingting He
2023	J	`jnl`	Improving drug-drug interactions prediction with interpretability via meta-path-based information fusion. Briefings Bioinform. Weizhong Zhao, Xueling Yuan, Xianjun Shen, Xingpeng Jiang, Chuan Shi, Tingting He, Xiaohua Hu
2022	—	`conf`	A Novel Drug Repositioning Model Based on Heterogeneous Graph Convolutional Network via Multi-task Learning. BIBM Shengwei Ye, Weizhong Zhao, Xianjun Shen, Xingpeng Jiang, Tingting He
2022	—	`conf`	Inferring microbe-metabolite interactions by heterogeneous network fusion based on graph convolution network. BIBM Pei Li, Ying Xiao, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen
2022	—	`conf`	MPGNN-DSA: A Meta-path-based Graph Neural Network for drug-side effect association prediction. BIBM Wenjie Yao, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen, Tingting He
2022	—	`conf`	Predicting human microbe-disease associations based on multi-source heterogeneous graph representation learning model. BIBM Haodong Wang, Han Sun, Yue Wang, Weizhong Zhao, Xingpeng Jiang, Xianjun Shen
2022	—	`conf`	Prediction of Drug-Drug Interactions Based on Meta-path-based Fusion Mechanism in Heterogeneous Information Network. BIBM Xueling Yuan, Weizhong Zhao, Xianjun Shen, Xingpeng Jiang, Tingting He
2021	—	`conf`	A Simplex Hypergraph Clustering Method for Detecting Higher-order Modules in Microbial Network. BIBM Ruilong Xiang, Lingling Fu, Yue Wang, Han Sun, Xianjun Shen
2020	—	`conf`	Categorizing Offensive Language in Social Networks: A Chinese Corpus, Systems and an Explanation Tool. CNCL Xiangru Tang, Xianjun Shen, Yujie Wang, Yujuan Yang
2019	—	`conf`	BERT-BiLSTM-CRF for Chinese Sensitive Vocabulary Recognition. ISICA Yujuan Yang, Xianjun Shen, Yujie Wang
2019	—	`conf`	Hypergraph Clustering Based on Intra-class Scatter Matrix for Mining Higher-order Microbial Module. BIBM Limin Yu, Xianjun Shen, Xingpeng Jiang, Jincai Yang, Yujuan Yang, Duo Zhong
2019	—	`conf`	The Classification of Chinese Sensitive Information Based on BERT-CNN. ISICA Yujie Wang, Xianjun Shen, Yujuan Yang
2019	J	`jnl`	基于神经网络的关系词非充盈态复句层次的自动识别 (Hierarchy Division of Compound Sentence with Non-saturated Relation Word via Neural Network). 计算机科学 Jincai Yang, Lulu Yang, Yanyan Wang, Xianjun Shen
2018	—	`conf`	A Novel Approach Based on Bi-Random Walk to Predict Microbe-Disease Associations. ICIC (3) Xianjun Shen, Huan Zhu, Xingpeng Jiang, Xiaohua Hu, Jincai Yang
2018	—	`conf`	High-order Organization of Weighted Microbial Interaction Network. BIBM Xianjun Shen, Xue Gong, Xingpeng Jiang, Jincai Yang, Tingting He, Xiaohua Hu
2018	J	`jnl`	Nonlinear expression and visualization of nonmetric relationships in genetic diseases and microbiome data. BMC Bioinform. Xianchao Zhu, Xianjun Shen, Xingpeng Jiang, Kaiping Wei, Tingting He, Yuanyuan Ma, Jiaqi Liu, Xiaohua Hu
2017	—	`conf`	Classify and identify the risky loci of type 2 diabetes with computational method. BIBM Jincai Yang, Fuli Zhang, Xingpeng Jiang, Xianjun Shen, Xiaohua Hu
2017	J	`jnl`	Identifying the Risky SNP of Osteoporosis with ID3-PEP Decision Tree Algorithm. Complex. Jincai Yang, Huichao Gu, Xingpeng Jiang, Qingyang Huang, Xiaohua Hu, Xianjun Shen
2017	—	`conf`	Systematic characterization and prediction of tumor-associated genes in mouse using microrna. BIBM Jincai Yang, Chunjie Guo, Xingpeng Jiang, Xiaohua Hu, Xianjun Shen
2017	—	`conf`	Visualization of disease relationships by multiple maps t-SNE regularization based on Nesterov accelerated gradient. BIBM Xianjun Shen, Xianchao Zhu, Xingpeng Jiang, Tingting He, Xiaohua Hu
2017	—	`conf`	Visualization of non-metric relationships by adaptive learning multiple maps t-SNE regularization. IEEE BigData Xianjun Shen, Xianchao Zhu, Xingpeng Jiang, Li Gao, Tingting He, Xiaohua Hu
2017	J	`jnl`	基于汉语复句的语义相关度计算及类别的标识 (Word Semantic Relevancy Computation and Categories Identification Based on Chinese Compound Sentences). 计算机科学 Jincai Yang, Zhongzhong Chen, Xianjun Shen, Jinzhu Hu
2016	—	`conf`	A novel identified temporal protein complexes strategy inspired by density-distance and brainstorming process. BIBM Xianjun Shen, Jin Zhou, Xingpeng Jiang, Xiaohua Hu, Tingting He, Jincai Yang, Dan Xie
2016	J	`jnl`	A novel proteins complex identification based on connected affinity and multi-level seed extension. Int. J. Data Min. Bioinform. Tingting He, Peng Li, Xiaohua Hu, Xianjun Shen, Yan Wang, Junmin Zhao
2016	J	`jnl`	Mobile nodes localisation based on hill climbing optimisation. Int. J. Wirel. Mob. Comput. Wenjie Hu, Yao Chen, Jincai Yang, Xianjun Shen
2016	—	`conf`	Predicting disease-microbe association by random walking on the heterogeneous network. BIBM Xianjun Shen, Yao Chen, Xingpeng Jiang, Xiaohua Hu, Tingting He, Jincai Yang
2016	—	`conf`	Walking in the PPI network to identify the risky SNP of osteoporosis with decision tree algorithm. BIBM Jincai Yang, Huichao Gu, Xingpeng Jiang, Qingyang Huang, Xiaohua Hu, Xianjun Shen
2015	J	`jnl`	An integrated approach to identify protein complex based on best neighbour and modularity increment. Int. J. Data Min. Bioinform. Xianjun Shen, Yanli Zhao, Yanan Li, Yang Yi, Tingting He, Jincai Yang
2015	—	`conf`	Detecting temporal protein complexes based on Neighbor Closeness and time course protein interaction networks. BIBM Xianjun Shen, Yi Li, Xingpeng Jiang, Yanli Zhao, Tingting He, Jincai Yang
2015	J	`jnl`	Dynamic identifying protein functional modules based on adaptive density modularity in protein-protein interaction networks. BMC Bioinform. Xianjun Shen, Li Yi, Yang Yi, Jincai Yang, Tingting He, Xiaohua Hu
2015	—	`conf`	Essential protein discovery based on network node correlation and invalidating protein node. BIBM Wenjie Hu, Xianjun Shen, Rui Xu
2015	J	`jnl`	Face detection based on particle swarm optimisation-free entropy minimisation. Int. J. Comput. Sci. Math. Xianjun Shen, Yang Yi, Wenyong Dong, Shuaiyu Guo, Junyan Li, Fan Chen
2015	J	`jnl`	Weighted fusion regularisation and predicting microbial interactions with vector autoregressive model. Int. J. Data Min. Bioinform. Yan Wang, Tingting He, Xingpeng Jiang, Jie Yuan, Xianjun Shen
2015	J	`jnl`	基于贝叶斯模型的复句关系词自动识别与规则挖掘 (Automatic Identification and Rule Mining for Relation Words of Chinese Compound Sentences Based on Bayesian Model). 计算机科学 Jincai Yang, Kaikai Guo, Xianjun Shen, Jinzhu Hu
2014	—	`conf`	A novel approach to breast cancer-related disease genes discovered through variation of density modularity. BIBM Xianjun Shen, Yang Yi, Yan Wang, Xiaohui Chen, Jincai Yang, Tingting He
2014	—	`conf`	A novel disease gene prediction method based on PPI network. BIBM Junmin Zhao, Tingting He, Xiaohua Hu, Yan Wang, Xianjun Shen, Minghong Fang, Jie Yuan
2014	—	`conf`	A novel proteins complex identification based on connected affinity and multi-level seed extension. BIBM Tingting He, Peng Li, Xiaohua Hu, Xianjun Shen, Yan Wang, Junmin Zhao
2014	J	`jnl`	An efficient protein complex mining algorithm based on Multistage Kernel Extension. BMC Bioinform. Xianjun Shen, Yanli Zhao, Yanan Li, Tingting He, Jincai Yang, Xiaohua Hu
2014	—	`conf`	Microbiome dynamics analysis using a novel multivariate vector autoregression model with weighted fusion regularization. BIBM Yan Wang, Xingpeng Jiang, Xiaohua Hu, Tingting He, Xianjun Shen, Jie Yuan
2014	—	`conf`	Prioritizing disease-causing genes based on network diffusion and rank concordance. BIBM Minghong Fang, Xiaohua Hu, Tingting He, Yan Wang, Junmin Zhao, Xianjun Shen, Jie Yuan
2013	—	`conf`	A novel protein complex identification algorithm based on gene co-expression (PCIA-GeCo). BIBM Junmin Zhao, Xiaohua Hu, Tingting He, Peng Li, Ming Zhang, Xianjun Shen
2013	—	`conf`	An efficient protein complex mining algorithm based on multistage kernel extension. BIBM Xianjun Shen, Yanli Zhao, Yanan Li, Tingting He, Jincai Yang
2013	—	`conf`	An integrated approach to identify protein complex based on best neighbor and modularity increment. BIBM Xianjun Shen, Yanli Zhao, Yanan Li, Jincai Yang, Tingting He, Xiaohua Hu
2013	—	`conf`	Identification of essential proteins based on network capital assessment and invalidating protein node. BIBM Xianjun Shen, Rui Xu, Xiaohui Chen, Jincai Yang, Tingting He
2013	—	`conf`	Mining protein complexes based on connected affinity clique extension. BIBM Peng Li, Xiaohua Hu, Tingting He, Junmin Zhao, Ming Zhang, Xianjun Shen
2013	—	`conf`	Protein functional module detection based on closely associated degree. BIBM Xianjun Shen, Xiaohui Chen, Rui Xu, Tingting He, Jincai Yang, Xiaohua Hu
2012	J	`jnl`	Greedy continuous particle swarm optimisation algorithm for the knapsack problems. Int. J. Comput. Appl. Technol. Xianjun Shen, Yanan Li, Caixia Chen, Jincai Yang, Dabin Zhang
2011	J	`jnl`	Hidden Tree Structure is a Key to the Emergence of Scaling in the World Wide Web CoRR Bojin Zheng, Jianmin Wang, Guisheng Chen, Jian Jiang, Xianjun Shen
2009	—	`conf`	A New Dynamical Particle Swarm Optimization Based on Principle Free Entropy Minimization. ICNC (5) Xianjun Shen, Fan Chen, Tingting He, Zhifeng Chi, Caixia Chen
2007	Misc	`conf`	A Distributed Coordination Framework for Adaptive Sensor Uncertainty Handling. International Conference on Computational Science (4) Zhifeng Dai, Yuanxiang Li, Bojin Zheng, Xianjun Shen
2007	Misc	`conf`	A Heuristic Particle Swarm Optimization for Cutting Stock Problem Based on Cutting Pattern. International Conference on Computational Science (4) Xianjun Shen, Yuanxiang Li, Jincai Yang, Li Yu
2007	—	`conf`	An Improved Threshold Selection Algorithm Based on Particle Swarm Optimization for Image Segmentation. ICNC (5) Kaiping Wei, Tao Zhang, Xianjun Shen, Jingnan Liu
2007	Misc	`conf`	Theory of Evolutionary Algorithm: A View from Thermodynamics. International Conference on Computational Science (4) Yuanxiang Li, Weiwu Wang, Xianjun Shen, Weiqin Ying, Bojin Zheng
2006	—	`conf`	A New Dynamic Particle Swarm Optimizer. SEAL Binbin Zheng, Yuanxiang Li, Xianjun Shen, Bojin Zheng
2006	C	`conf`	General Particle Swarm Optimization Based on Simulated Annealing for Multi-specification One-Dimensional Cutting Stock Problem. CIS Xianjun Shen, Yuanxiang Li, Bojin Zheng, Zhifeng Dai
2002	Misc	`conf`	A Coordination Architecture for Distributed Autonomous Control Systems. PDPTA Xianjun Shen, Ronaldo Menezes, Hector Gutierrez