Xiangrong Liu

100 papers A* 2B 3C 3Misc 1Journal 71Unranked 20
YearRankTypeTitle / Venue / Authors
2026 J jnl
Adaptive open-world learning for analyzing wafer map variations.
Expert Syst. Appl.
Yinghang Wu, Lian Shen, Han Yan, Xiangrong Liu, Chang Xu
2026 A* conf
Decoupled Spatiotemporal Forecasting from Extreme Sparse Observations via Quantized Latent Space.
AAAI
Zhongnan Weng, Yue Hong, Hang Yu, Jiayi Que, Juan Liu, Xiangrong Liu
2026 J jnl
Dnot: feature diffusion enhanced neural operator transformer for PDEs on general geometries.
Eng. Comput.
Hang Yu, Juan Cao, Xiangrong Liu, Zhonggui Chen
2026 J jnl
FKSUDDAPre: A drug-disease association prediction framework based on F-TEST feature selection and AMDKSU resampling with interpretability analysis.
PLoS Comput. Biol.
Yun Zuo, Chenyi Zhang, Ge Hua, Qiao Ning, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2026 J jnl
HetMS-AMRGNN: Heterogeneous multi-scale graph neural network for antimicrobial drug recommendation in electronic health records.
Biomed. Signal Process. Control.
Zhengqiu Yu, Yueping Ding, Zhongnan Weng, Xiangrong Liu
2026 J jnl
SurfFold: a unified model for protein inverse folding by integrating surface and structural information.
Bioinform.
Darong Li, Lian Shen, Meijia Song, Deyi Li, Juan Liu, Xiangrong Liu
2025 J jnl
AFPDeepPred: A Deep Learning Framework for Accurate Identification of Antifreeze Proteins.
J. Chem. Inf. Model.
Xingqiao Lin, Jiahui Guan, Feng Wang, Peilin Xie, Yiyang Zhao, Zhihao Zhao, Mingyi Xiang, Leyi Wei, Xiangrong Liu, Tzong-Yi Lee, Ying-Chih Chiang, Junwen Wang, Lantian Yao
2025 J jnl
Adaptive symmetry-based adversarial perturbation augmentation for molecular graph representations with dual-fusion attention information.
Inf. Fusion
Shuting Jin, Xiangrong Liu, Junlin Xu, Sisi Yuan, Hongxing Xiang, Lian Shen, Chunyan Li, Zhangming Niu, Yinhui Jiang
2025 — conf
ChiralRetro: Chirality-Sensitive Encoding and Enhanced Pathway Strategies in Retrosynthesis.
BCB
Zheyi Cai, Yinghui Jiang, Changzhi Jiang, Lian Shen, Hongpeng Qiu, Yuan Lin, Juan Liu, Xiangrong Liu
2025 J jnl
Decoupling and Damping: Structurally-Regularized Gradient Matching for Multimodal Graph Condensation.
CoRR
Lian Shen, Zhendan Chen, Yinhui Jiang, Meijia Song, Ziming Su, Juan Liu, Xiangrong Liu
2025 J jnl
DeepDR: an integrated deep-learning model web server for drug repositioning.
CoRR
Shuting Jin, Yi Jiang, Yimin Liu, Tengfei Ma, Dong-Sheng Cao, Leyi Wei, Xiangrong Liu, Xiangxiang Zeng
2025 J jnl
Evaluating large language models for information extraction from gastroscopy and colonoscopy reports through multi-strategy prompting.
J. Biomed. Informatics
Zhengqiu Yu, Lexin Fang, Yueping Ding, Yan Shen, Lei Xu, Yaozheng Cai, Xiangrong Liu
2025 J jnl
HyperACP: A cutting-edge hybrid framework for anticancer peptide classification via scalable feature extraction and adaptive neighbor-based synthesis.
PLoS Comput. Biol.
Bangyi Zhang, Yun Zuo, Jun Wan, Jiayue Liu, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2025 A* conf
LOHA: Direct Graph Spectral Contrastive Learning Between Low-Pass and High-Pass Views.
AAAI
Ziyun Zou, Yinghui Jiang, Lian Shen, Juan Liu, Xiangrong Liu
2025 J jnl
LOHA: Direct Graph Spectral Contrastive Learning Between Low-pass and High-pass Views.
CoRR
Ziyun Zou, Yinghui Jiang, Lian Shen, Juan Liu, Xiangrong Liu
2025 J jnl
MlyPredCSED: based on extreme point deviation compensated clustering combined with cross-scale convolutional neural networks to predict multiple lysine sites in human.
Briefings Bioinform.
Yun Zuo, Xingze Fang, Jiankang Chen, Jiayi Ji, Yuwen Li, Zeyu Wu, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng, Hongwei Yin, Anjing Zhao
2025 B conf
MoHyperSynergy: A multimodal representation fusion method using hypergraph neural networks for drug synergy prediction.
IJCNN
Zelong Chen, Yue Hong, Yanni Xu, Xinyi Zhang, Menglong Zhang, Ruichao Hu, Juan Liu, Xiangrong Liu
2025 J jnl
NABP-BERT: NANOBODY®-antigen binding prediction based on bidirectional encoder representations from transformers (BERT) architecture.
Briefings Bioinform.
Fatma S. Ahmed, Saleh K. H. Aly, Xiangrong Liu
2025 J jnl
NABP-LSTM-Att: Nanobody-Antigen binding prediction using bidirectional LSTM and soft attention mechanism.
Comput. Biol. Chem.
Fatma S. Ahmed, Saleh K. H. Aly, Mohamed A. M. El-Tabakh, Xiangrong Liu
2025 J jnl
Octopus optimization algorithm: a novel single- and multi-objective optimization algorithm for optimization problems.
Clust. Comput.
Meijia Song, Jun Lin, Xiangrong Liu, Heming Jia, Shuyuan Luo
2025 — conf
PipeQS: Pipeline-Based Adaptive Quantization and Staleness-Aware Distributed GNN Training System.
ECML/PKDD (2)
Donghang Wu, Lian Shen, Changzhi Jiang, Yanhao Li, Xiangrong Liu
2025 J jnl
PreAIS: Prediction of A-to-I editing sites based on DNN-CNN deep learning models.
Comput. Biol. Chem.
Xingze Fang, Yun Zuo, Youxu Tan, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2025 Misc conf
RETAIN: Reliable Topology Augmentation for both Heterophilic and Homophilic Graphs.
ICASSP
Ziyun Zou, Lian Shen, Yanhao Li, Yifan Lu, Juan Liu, Xiangrong Liu
2024 J jnl
A heterogeneous graph neural network with automatic discovery of effective metapaths for drug-target interaction prediction.
Future Gener. Comput. Syst.
Menglong Zhang, Yue Hong, Lian Shen, Shiyu Xu, Yanni Xu, Xinyi Zhang, Juan Liu, Xiangrong Liu
2024 J jnl
EPI-Trans: an effective transformer-based deep learning model for enhancer promoter interaction prediction.
BMC Bioinform.
Fatma S. Ahmed, Saleh K. H. Aly, Xiangrong Liu
2024 J jnl
FishIR: Identifying Pufferfish Individual Based on Deep Learning and Face Recognition.
IEEE Access
Yuan Lin, Shaomin Xie, Debasish Ghose, Xiangrong Liu, Junyong You, Jari Korhonen, Juan Liu, Soumya P. Dash
2024 — conf
FlexMem: Proactive Memory Deduplication for Qcow2-Based VMs with Virtual Persistent Memory.
APNet
Weinan Liu, Zhihao Zhang, Xiangrong Liu, Yiming Zhang
2024 J jnl
Glypred: Lysine Glycation Site Prediction via CCU-LightGBM-BiLSTM Framework with Multi-Head Attention Mechanism.
J. Chem. Inf. Model.
Yun Zuo, Bangyi Zhang, Yinkang Dong, Wenying He, Yue Bi, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2024 J jnl
ILYCROsite: Identification of lysine crotonylation sites based on FCM-GRNN undersampling technique.
Comput. Biol. Chem.
Yun Zuo, Minquan Wan, Yang Shen, Xinheng Wang, Wenying He, Yue Bi, Xiangrong Liu, Zhaohong Deng
2024 B conf
LMGAN: A Progressive End-to-End Chinese Landscape Painting Generation Model.
IJCNN
Yingqian Zhang, Shaomin Xie, Xiangrong Liu, Nian Zhang
2024 J jnl
MOASL: Predicting drug mechanism of actions through similarity learning with transcriptomic signature.
Comput. Biol. Medicine
Likun Jiang, Susu Qu, Zhengqiu Yu, Jianmin Wang, Xiangrong Liu
2024 J jnl
MSlocPRED: deep transfer learning-based identification of multi-label mRNA subcellular localization.
Briefings Bioinform.
Yun Zuo, Bangyi Zhang, Wenying He, Yue Bi, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2024 J jnl
MoleMCL: a multi-level contrastive learning framework for molecular pre-training.
Bioinform.
Xinyi Zhang, Yanni Xu, Changzhi Jiang, Lian Shen, Xiangrong Liu
2024 J jnl
PreMLS: The undersampling technique based on ClusterCentroids to predict multiple lysine sites.
PLoS Comput. Biol.
Yun Zuo, Xingze Fang, Jiayong Wan, Wenying He, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2024 J jnl
Regularity-constrained point cloud reconstruction of building models via global alignment.
Vis. Comput.
Hang Yu, Juan Cao, Xiangrong Liu, Zhonggui Chen
2024 J jnl
Surface-based multimodal protein-ligand binding affinity prediction.
Bioinform.
Shiyu Xu, Lian Shen, Menglong Zhang, Changzhi Jiang, Xinyi Zhang, Yanni Xu, Juan Liu, Xiangrong Liu
2023 J jnl
A general hypergraph learning algorithm for drug multi-task predictions in micro-to-macro biomedical networks.
PLoS Comput. Biol.
Shuting Jin, Yue Hong, Li Zeng, Yinghui Jiang, Yuan Lin, Leyi Wei, Zhuohang Yu, Xiangxiang Zeng, Xiangrong Liu
2023 — conf
Attention-Aware Contrastive Learning for Predicting Peptide-HLA Binding Specificity.
ICIC (3)
Pengyu Luo, Yuehan Huang, Xinyi Zhang, Lian Shen, Yuan Lin, Xiangrong Liu, Xiaoyang Huang
2023 J jnl
Bioactive Peptide Recognition Based on NLP Pre-Train Algorithm.
IEEE ACM Trans. Comput. Biol. Bioinform.
Likun Jiang, Nan Sun, Yue Zhang, Xinyu Yu, Xiangrong Liu
2023 J jnl
Chemical structure-aware molecular image representation learning.
Briefings Bioinform.
Hongxin Xiang, Shuting Jin, Xiangrong Liu, Xiangxiang Zeng, Li Zeng
2023 — conf
Fast Accurate Fish Recognition with Deep Learning Based on a Domain-Specific Large-Scale Fish Dataset.
MMM (1)
Yuan Lin, Zhaoqi Chu, Jari Korhonen, Jiayi Xu, Xiangrong Liu, Juan Liu, Min Liu, Lvping Fang, Weidi Yang, Debasish Ghose, Junyong You
2023 J jnl
KGNMDA: A Knowledge Graph Neural Network Method for Predicting Microbe-Disease Associations.
IEEE ACM Trans. Comput. Biol. Bioinform.
Changzhi Jiang, Minli Tang, Shuting Jin, Wei Huang, Xiangrong Liu
2023 — conf
MGCPI: A Multi-granularity Neural Network for Predicting Compound-Protein Interactions.
ICIC (3)
Peixuan Lin, Likun Jiang, Fatma S. Ahmed, Xinru Ruan, Xiangrong Liu, Juan Liu
2023 J jnl
MSGCL: inferring miRNA-disease associations based on multi-view self-supervised graph structure contrastive learning.
Briefings Bioinform.
Xinru Ruan, Changzhi Jiang, Peixuan Lin, Yuan Lin, Juan Liu, Shaohui Huang, Xiangrong Liu
2023 — conf
RareDR: A Drug Repositioning Approach for Rare Diseases Based on Knowledge Graph.
ICIC (3)
Yuehan Huang, Shuting Jin, Xinyu Yu, Changzhi Jiang, Zhengqiu Yu, Xiangrong Liu, Shaohui Huang
2023 — conf
Uncertainty-Confidence Fused Pseudo-labeling for Graph Neural Networks.
PRCV (9)
Pingjiang Long, Zihao Jian, Xiangrong Liu
2022 J jnl
A Deep Ensemble Predictor for Identifying Anti-Hypertensive Peptides Using Pretrained Protein Embedding.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yuanying Zhuang, Xiangrong Liu, Yue Zhong, Longxin Wu
2022 J jnl
DeepTTA: a transformer-based model for predicting cancer drug response.
Briefings Bioinform.
Likun Jiang, Changzhi Jiang, Xinyu Yu, Rao Fu, Shuting Jin, Xiangrong Liu
2022 J jnl
Drug-target interactions prediction via deep collaborative filtering with multiembeddings.
Briefings Bioinform.
Ruolan Chen, Feng Xia, Bing Hu, Shuting Jin, Xiangrong Liu
2022 J jnl
Effect of price reduction on renewable energy technology supply chain performance and contract design.
J. Oper. Res. Soc.
Chuanhui Xiong, Anna G. Devlin, Jatinder N. D. Gupta, Xiangrong Liu
2022 J jnl
LaGAT: link-aware graph attention network for drug-drug interaction prediction.
Bioinform.
Yue Hong, Pengyu Luo, Shuting Jin, Xiangrong Liu
2022 J jnl
MLysPRED: graph-based multi-view clustering and multi-dimensional normal distribution resampling techniques to predict multiple lysine sites.
Briefings Bioinform.
Yun Zuo, Yue Hong, Xiangxiang Zeng, Qiang Zhang, Xiangrong Liu
2022 J jnl
The challenges of explainable AI in biomedical data science.
BMC Bioinform.
Henry Han, Xiangrong Liu
2022 J jnl
preMLI: a pre-trained method to uncover microRNA-lncRNA potential interactions.
Briefings Bioinform.
Xinyu Yu, Likun Jiang, Shuting Jin, Xiangxiang Zeng, Xiangrong Liu
2021 — conf
A Meta-Path based Drug-Target Prediction Model with Collaborative Attention Mechanisms.
BIBM
Bing Hu, Feng Xia, Ruolan Chen, Shuting Jin, Xiangrong Liu
2021 J jnl
A novel antibacterial peptide recognition algorithm based on BERT.
Briefings Bioinform.
Yue Zhang, Jianyuan Lin, Lianmin Zhao, Xiangxiang Zeng, Xiangrong Liu
2021 J jnl
Application of deep learning methods in biological networks.
Briefings Bioinform.
Shuting Jin, Xiangxiang Zeng, Feng Xia, Wei Huang, Xiangrong Liu
2021 J jnl
CarSite-II: an integrated classification algorithm for identifying carbonylated sites based on K-means similarity-based undersampling and synthetic minority oversampling techniques.
BMC Bioinform.
Yun Zuo, Jianyuan Lin, Xiangxiang Zeng, Quan Zou, Xiangrong Liu
2021 J jnl
Editorial: Membrane Computing. A Special Issue Dedicated to Gheorghe Păun on his 70th Birthday.
Int. J. Unconv. Comput.
Gexiang Zhang, Linqiang Pan, Xiangrong Liu
2021 J jnl
HeTDR: Drug repositioning based on heterogeneous networks and text mining.
Patterns
Shuting Jin, Zhangming Niu, Changzhi Jiang, Wei Huang, Feng Xia, Xurui Jin, Xiangrong Liu, Xiangxiang Zeng
2021 J jnl
Heterogeneous network-based drug repurposing for COVID-19.
CoRR
Shuting Jin, Xiangxiang Zeng, Wei Huang, Feng Xia, Changzhi Jiang, Xiangrong Liu, Shaoliang Peng
2021 J jnl
Neural-like P systems with plasmids.
Inf. Comput.
Francis George C. Cabarle, Xiangxiang Zeng, Niall Murphy, Tao Song, Alfonso Rodríguez-Patón, Xiangrong Liu
2021 — conf
Pm
BIBM
Yun Zuo, Xiangrong Liu, Xiangxiang Zeng
2021 J jnl
Predicting enhancer-promoter interactions by deep learning and matching heuristic.
Briefings Bioinform.
Xiaoping Min, Congmin Ye, Xiangrong Liu, Xiangxiang Zeng
2020 — conf
A multi-task learning method for analyzing microbiota as cancer immunotherapy signal.
BIBM
Changzhi Jiang, Yousi Fu, Shuting Jin, Xiangrong Liu, Baishan Fang, Xiangxiang Zeng
2020 J jnl
Computational methods for identifying the critical nodes in biological networks.
Briefings Bioinform.
Xiangrong Liu, Zengyan Hong, Juan Liu, Yuan Lin, Alfonso Rodríguez-Patón, Quan Zou, Xiangxiang Zeng
2020 J jnl
Identifying enhancer-promoter interactions with neural network based on pre-trained DNA vectors and attention mechanism.
Bioinform.
Zengyan Hong, Xiangxiang Zeng, Leyi Wei, Xiangrong Liu
2020 J jnl
Multiobjective Particle Swarm Optimization Based on Network Embedding for Complex Network Community Detection.
IEEE Trans. Comput. Soc. Syst.
Xiangrong Liu, Yanzi Du, Min Jiang, Xiangxiang Zeng
2020 J jnl
Sequence clustering in bioinformatics: an empirical study.
Briefings Bioinform.
Quan Zou, Gang Lin, Xingpeng Jiang, Xiangrong Liu, Xiangxiang Zeng
2019 — conf
A Deep Neural Network for Antimicrobial Peptide Recognition.
BIBM
Jianyuan Lin, Xiangxiang Zeng, Yun Zuo, Ying Ju, Xiangrong Liu
2019 C conf
A Novel Deceptive Jamming Method Via Frequency Diverse Array.
IGARSS
Wei Mao, Hui Wang, Shunsheng Zhang, Xiangrong Liu
2019 J jnl
An advanced approach to identify antimicrobial peptides and their function types for penaeus through machine learning strategies.
BMC Bioinform.
Yuan Lin, Yinyin Cai, Juan Liu, Chen Lin, Xiangrong Liu
2019 J jnl
Computational Prediction of Sigma-54 Promoters in Bacterial Genomes by Integrating Motif Finding and Machine Learning Strategies.
IEEE ACM Trans. Comput. Biol. Bioinform.
Bingqiang Liu, Ling Han, Xiangrong Liu, Jichang Wu, Qin Ma
2019 J jnl
On solutions and representations of spiking neural P systems with rules on synapses.
Inf. Sci.
Francis George C. Cabarle, Ren Tristan A. de la Cruz, Dionne Peter P. Cailipan, Defu Zhang, Xiangrong Liu, Xiangxiang Zeng
2019 C conf
PolSAR Image Edge Detection via Structure Tensor Analysis.
IGARSS
Xiangrong Liu, Wei Mao, Shunsheng Zhang, Lei Wu, Wen-Qin Wang
2019 J jnl
Predicting of Associations Between MicroRNA and Human Diseases Based on Multiple Similarities and Arbitrarily-Order Proximity Network Embedding.
IEEE Access
Xiujin Wu, Wenhua Zeng, Yuxiu Xu, Beizhan Wang, Xiangrong Liu, Fan Lin, Gil Alterovitz
2019 C conf
Two-Dimensional Imaging With Stationary Nonuniform Frequency Diverse Array Transmitter.
IGARSS
Xiangrong Liu, Wei Mao, Lei Wu
2019 J jnl
deepDR: a network-based deep learning approach to in silico drug repositioning.
Bioinform.
Xiangxiang Zeng, Siyi Zhu, Xiangrong Liu, Yadi Zhou, Ruth Nussinov, Feixiong Cheng
2018 — conf
A Real-Time Distributed Deep Learning Approach for Intelligent Event Recognition in Long Distance Pipeline Monitoring with DOFS.
CyberC
Jiping Chen, Hui-Juan Wu, Xiangrong Liu, Yao Xiao, Mengjiao Wang, Mingru Yang, Yunjiang Rao
2018 — conf
A Weighted Bagging LightGBM Model for Potential lncRNA-Disease Association Identification.
BIC-TA (1)
Xin Chen, Xiangrong Liu
2018 — conf
An Implementation of Elementary Arithmetic with Virus Machine.
Enjoying Natural Computing
Xiaoshan Yan, Xiangrong Liu, Xiangxiang Zeng, Alfonso Rodríguez-Patón
2018 — conf
DNA Strand Displacement Based on Nicking Enzyme for DNA Logic Circuits.
BIC-TA (1)
Gaiying Wang, Zhiyu Wang, Xiaoshan Yan, Xiangrong Liu
2018 J jnl
Structural Hole Spanner in HumanNet Identifies Disease Gene and Drug targets.
IEEE Access
Xiangxiang Zeng, Jiawei Lin, Chen Lin, Xiangrong Liu, Alfonso Rodríguez-Patón
2017 B conf
Deep-based fisher vector for mobile visual search.
ICIP
Chen Huang, Shengchuan Zhang, Xianming Lin, Xiangrong Liu, Rongrong Ji
2016 J jnl
Investment behavior prediction in heterogeneous information network.
Neurocomputing
Xiangxiang Zeng, You Li, Stephen C. H. Leung, Ziyu Lin, Xiangrong Liu
2016 J jnl
Question microblog identification and answer recommendation.
Multim. Syst.
Xiangrong Liu, Runquan Xie, Chen Lin, Liujuan Cao
2015 J jnl
A uniform solution to integer factorization using time-free spiking neural P system.
Neural Comput. Appl.
Xiangrong Liu, Ziming Li, Juan Suo, Juan Liu, Xiaoping Min
2015 J jnl
Asynchronous Spiking Neural P Systems with Anti-Spikes.
Neural Process. Lett.
Tao Song, Xiangrong Liu, Xiangxiang Zeng
2015 J jnl
Asynchronous spiking neural P systems with rules on synapses.
Neurocomputing
Tao Song, Quan Zou, Xiangrong Liu, Xiangxiang Zeng
2015 J jnl
The power of time-free tissue P systems: Attacking NP-complete problems.
Neurocomputing
Xiangrong Liu, Juan Suo, Stephen C. H. Leung, Juan Liu, Xiangxiang Zeng
2014 J jnl
Identifying Reliable Posts and Users in Online Social Networks.
Int. J. Pattern Recognit. Artif. Intell.
Sifa Xie, Wei Weng, Ke Chen, Xiangrong Liu
2014 J jnl
On languages generated by spiking neural P systems with weights.
Inf. Sci.
Xiangxiang Zeng, Lei Xu, Xiangrong Liu, Linqiang Pan
2014 J jnl
Solving Multidimensional 0-1 Knapsack Problem with Time-Free Tissue P Systems.
J. Appl. Math.
Xiangrong Liu, Ziming Li, Juan Suo, Ying Ju, Juan Liu, Xiangxiang Zeng
2014 — conf
Time-Free Tissue P Systems for Solving the Hamilton Path Problem.
BIC-TA
Xiangxiang Zeng, Ningxiang Ding, Fei Xing, Xiangrong Liu
2010 J jnl
A novel computing model of the maximum clique problem based on circular DNA.
Sci. China Inf. Sci.
Jing Yang, Cheng Zhang, Jin Xu, Xiangrong Liu, Xiaoli Qiang
2010 — conf
A programmable biomolecular computing devices with RNAi.
BIC-TA
Xiangrong Liu, Xiaoying Shi, Ying Ju
2010 J jnl
Development of an in vivo computer for the SAT problem.
Math. Comput. Model.
Xiangrong Liu, Shudong Wang
2010 — conf
Quantitative modeling and simulation of Anterior Chamber in OCT images.
BIC-TA
Le Su, Ying Ju, Xiangrong Liu
2006 — conf
Predicting Melting Temperature (Tm) of DNA Duplex Based on Neural Network.
ICIC (3)
Xiangrong Liu, Wenbin Liu, Juan Liu, Linqiang Pan, Jin Xu
2003 J jnl
Solving the 3-SAT Problem Based on DNA Computing.
J. Chem. Inf. Comput. Sci.
Wenbin Liu, Lin Gao, Xiangrong Liu, Shudong Wang, Jin Xu