Xianghong Jasmine Zhou

31 papers A* 2B 1Misc 1Journal 22Unranked 5
YearRankTypeTitle / Venue / Authors
2022 J jnl
Computational Analysis of High-Dimensional DNA Methylation Data for Cancer Prognosis.
J. Comput. Biol.
Ran Hu, Xianghong Jasmine Zhou, Wenyuan Li
2019 J jnl
CMEP: a database for circulating microRNA expression profiling.
Bioinform.
Jianrong Li, Chun-Yip Tong, Tsai-Jung Sung, Ting-Yu Kang, Xianghong Jasmine Zhou, Chun-Chi Liu
2016 J jnl
Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells.
Nucleic Acids Res.
Jianrong Li, Chuan-Hu Sun, Wenyuan Li, Rou-Fang Chao, Chieh-Chen Huang, Xianghong Jasmine Zhou, Chun-Chi Liu
2015 J jnl
Finding Genetic Overlaps Among Diseases Based on Ranked Gene Lists.
J. Comput. Biol.
Quan Chen, Xianghong Jasmine Zhou, Fengzhu Sun
2015 J jnl
Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data.
Bioinform.
Wenyuan Li, Ke Gong, Qingjiao Li, Frank Alber, Xianghong Jasmine Zhou
2015 J jnl
IIIDB: a database for isoform-isoform interactions and isoform network modules.
BMC Genom.
Yu-Ting Tseng, Wenyuan Li, Ching-Hsien Chen, Shi-Hua Zhang, Jeremy J. W. Chen, Xianghong Jasmine Zhou, Chun-Chi Liu
2015 J jnl
Network tuned multiple rank aggregation and applications to gene ranking.
BMC Bioinform.
Wenhui Wang, Xianghong Jasmine Zhou, Zhenqiu Liu, Fengzhu Sun
2014 J jnl
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections.
Nucleic Acids Res.
Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou
2012 J jnl
Algorithm to Identify Frequent Coupled Modules from Two-Layered Network Series: Application to Study Transcription and Splicing Coupling.
J. Comput. Biol.
Wenyuan Li, Chao Dai, Chun-Chi Liu, Xianghong Jasmine Zhou
2012 J jnl
Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.
Bioinform.
Wenyuan Li, Shi-Hua Zhang, Chun-Chi Liu, Xianghong Jasmine Zhou
2012 J jnl
Integrating many co-splicing networks to reconstruct splicing regulatory modules.
BMC Syst. Biol.
Chao Dai, Wenyuan Li, Juan Liu, Xianghong Jasmine Zhou
2012 J jnl
Preface: Special Issue.
J. Comput. Biol.
Ting Chen, Paul Marjoram, Fengzhu Sun, Xianghong Jasmine Zhou
2011 J jnl
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules.
Bioinform.
Shi-Hua Zhang, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou
2011 J jnl
Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation.
PLoS Comput. Biol.
Wenyuan Li, Chun-Chi Liu, Tong Zhang, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou
2010 J jnl
An integrative modular approach to systematically predict gene-phenotype associations.
BMC Bioinform.
Michael R. Mehan, Juan Nunez-Iglesias, Chao Dai, Michael S. Waterman, Xianghong Jasmine Zhou
2010 J jnl
Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets.
J. Biomed. Informatics
Wenyuan Li, Min Xu, Xianghong Jasmine Zhou
2009 J jnl
An Integrative Network Approach to Map the Transcriptome to the Phenome.
J. Comput. Biol.
Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou
2009 — conf
Discovering Causal and Temporal Relations in Biomedical Texts.
AAAI Spring Symposium: Learning by Reading and Learning to Read
Rutu Mulkar-Mehta, Jerry R. Hobbs, Chun-Chi Liu, Xianghong Jasmine Zhou
2009 Misc conf
Identifying Dynamic Network Modules with Temporal and Spatial Constraints.
Pacific Symposium on Biocomputing
Ruoming Jin, Scott McCallen, Chun-Chi Liu, Yang Xiang, Eivind Almaas, Xianghong Jasmine Zhou
2009 J jnl
Integrative disease classification based on cross-platform microarray data.
BMC Bioinform.
Chun-Chi Liu, Jianjun Hu, Mrinal Kalakrishnan, Haiyan Huang, Xianghong Jasmine Zhou
2008 B conf
An Integrative Network Approach to Map the Transcriptome to the Phenome.
RECOMB
Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou
2007 — conf
A graph-based approach to systematically reconstruct human transcriptional regulatory modules.
ISMB/ECCB (Supplement of Bioinformatics)
Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou
2007 — conf
Characterizing Disease-specific Pathways and Their Coordination by Integrative Microarray Analysis with Application to Cancer.
BIOCOMP
Min Xu, Ming-Chih J. Kao, Juan Nunez-Iglesias, Joseph Nevins, Mike West, Xianghong Jasmine Zhou
2007 J jnl
Gene Aging Nexus: a web database and data mining platform for microarray data on aging.
Nucleic Acids Res.
Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias, Kangyu Zhang, Kiran Kamath, Michael S. Waterman, Caleb E. Finch, Xianghong Jasmine Zhou
2007 — conf
Systematic discovery of functional modules and context-specific functional annotation of human genome.
ISMB/ECCB (Supplement of Bioinformatics)
Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou
2006 J jnl
Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data.
Bioinform.
Fei Pan, Kiran Kamath, Kangyu Zhang, Sudip Pulapura, Avinash Achar, Juan Nunez-Iglesias, Yu Huang, Xifeng Yan, Jiawei Han, Haiyan Hu, Min Xu, Jianjun Hu, Xianghong Jasmine Zhou
2006 J jnl
Integrative missing value estimation for microarray data.
BMC Bioinform.
Jianjun Hu, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou
2005 A* conf
Mining Closed Relational Graphs with Connectivity Constraints.
ICDE
Xifeng Yan, Xianghong Jasmine Zhou, Jiawei Han
2005 A* conf
Mining closed relational graphs with connectivity constraints.
KDD
Xifeng Yan, Xianghong Jasmine Zhou, Jiawei Han
2005 — conf
Mining coherent dense subgraphs across massive biological networks for functional discovery.
ISMB (Supplement of Bioinformatics)
Haiyan Hu, Xifeng Yan, Yu Huang, Jiawei Han, Xianghong Jasmine Zhou
2004 J jnl
Determination of Local Statistical Significance of Patterns in Markov Sequences with Application to Promoter Element Identification.
J. Comput. Biol.
Haiyan Huang, Ming-Chih J. Kao, Xianghong Jasmine Zhou, Jun S. Liu, Wing Hung Wong