Xiangfeng Wang

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2024 J jnl
Genom. Proteom. Bioinform.
Qian Cheng, Xiangfeng Wang
2022 J jnl
Briefings Bioinform.
Qian Cheng, Shuqing Jiang, Feng Xu, Qian Wang, Yingjie Xiao, Ruyang Zhang, Jiuran Zhao, Jianbing Yan, Chuang Ma, Xiangfeng Wang
2022 J jnl
Genom. Proteom. Bioinform.
Chunming Yang, Jun Yan, Shuqin Jiang, Xia Li, Haowei Min, Xiangfeng Wang, Dongyun Hao
2021 J jnl
Nucleic Acids Res.
Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, LiLi Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir Ali Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo
2020 J jnl
Genom. Proteom. Bioinform.
Shi-Jian Zhang, Lei Liu, Ruolin Yang, Xiangfeng Wang
2020 J jnl
Genom. Proteom. Bioinform.
Jun Yan, Dong Zou, Chen Li, Zhang Zhang, Shuhui Song, Xiangfeng Wang
2018 J jnl
Bioinform.
Weilong Guo, Ping Zhu, Matteo Pellegrini, Michael Q. Zhang, Xiangfeng Wang, Zhongfu Ni
2018 J jnl
Genom. Proteom. Bioinform.
Shi-Jian Zhang, Peiqi Meng, Jieni Zhang, Peizeng Jia, Jiuxiang Lin, Xiangfeng Wang, Feng Chen, Xiaoxing Wei
2013 J jnl
Genom. Proteom. Bioinform.
Xiaoxing Wei, Xiangfeng Wang
2012 J jnl
Bioinform.
Chuang Ma, Hao Chen, Mingming Xin, Ruolin Yang, Xiangfeng Wang
2012 J jnl
Genom. Proteom. Bioinform.
Mingming Xin, Xiangfeng Wang, Huiru Peng, Yingyin Yao, Chaojie Xie, Yao Han, Zhongfu Ni, Qixin Sun
2009 J jnl
Bioinform.
Xiangfeng Wang, Zhihui Yu, Xiaozeng Yang, Xing Wang Deng, Lei Li
2006 J jnl
Bioinform.
Xiangfeng Wang, Hang He, Lei Li, Runsheng Chen, Xing Wang Deng, Songgang Li
tests/unit/conftest.py
← Index tests/unit/conftest.py python
"""
Unit test configuration.

Replaces the redb.extractors package with a minimal stub so that
``from redb.extractors.database_exporters import ...`` works without
pulling in the heavy __init__.py import chain (pefile, elftools,
signify, magic, etc.).

Also stubs out redb.settings so that Elasticsearch / ClickHouse
clients are never actually created during unit tests.

Additionally installs binaryninja stubs for decompiler unit tests.

Stubs heavy third-party packages (pefile, magic, psutil, etc.) so that
redb.workers, redb.queries, redb.ingestor, and redb.s3_utils can all
be imported and patched in unit tests without requiring the real packages.
"""
import sys
import types
from pathlib import Path
from unittest.mock import MagicMock

# ---------------------------------------------------------------------------
# 0. Install binaryninja stubs FIRST — must happen before any decompiler
#    module is imported (triggered by __init__.py chain).
# ---------------------------------------------------------------------------
from tests.unit.conftest_binja_stubs import install_binja_stubs as _install_binja_stubs
_install_binja_stubs()

# ---------------------------------------------------------------------------
# 1. Stub external packages required by database_exporters.py itself,
#    the decompiler chain, and the workers/ingestor modules.
# ---------------------------------------------------------------------------
_heavy_deps = [
    # Database / networking
    "elasticsearch", "clickhouse_connect", "dotenv",
    # Binary analysis — top-level packages
    "pefile", "magic", "machofile",
    # Archive handling
    "py7zr", "pyzipper",
    # File type detection
    "magika",
    # System monitoring
    "psutil",
    # S3 / MinIO (submodule paths needed for `from minio.error import S3Error`)
    "minio", "minio.error",
    # YARA
    "yara_x",
    # Binary parsing — elftools tree
    "elftools", "elftools.elf", "elftools.elf.elffile",
    "elftools.common", "elftools.common.exceptions",
    # Code signing — signify tree
    "signify", "signify.fingerprinter", "signify.authenticode",
    # LIEF
    "lief",
    # Fuzzy hashing
    "ppdeep",
    # .NET analysis
    "dotnetfile",
    # Crypto / ASN.1
    "asn1crypto", "asn1crypto.cms", "asn1crypto.pem", "asn1crypto.x509", "asn1crypto.core",
    # Hashing
    "xxhash", "blake3", "mmh3", "numpy",
    # APK analysis
    "androguard", "androguard.core", "androguard.core.apk",
    "androguard.core.dex", "androguard.core.api_specific_resources",
    "androguard.misc",
    "permhash",
]
for _mod in _heavy_deps:
    if _mod not in sys.modules:
        try:
            __import__(_mod)
        except (ImportError, ModuleNotFoundError):
            sys.modules[_mod] = MagicMock()

# Stub urllib3 with a real Warning subclass (warnings.filterwarnings needs a class)
if "urllib3" not in sys.modules or isinstance(sys.modules.get("urllib3"), MagicMock):
    try:
        import urllib3  # noqa: F401
    except (ImportError, ModuleNotFoundError):
        _urllib3_mod = types.ModuleType("urllib3")
        _urllib3_exc = types.ModuleType("urllib3.exceptions")

        class _InsecureRequestWarning(UserWarning):
            pass

        _urllib3_exc.InsecureRequestWarning = _InsecureRequestWarning
        _urllib3_mod.exceptions = _urllib3_exc
        sys.modules["urllib3"] = _urllib3_mod
        sys.modules["urllib3.exceptions"] = _urllib3_exc

# Provide a functional ppdeep stub (tests call ppdeep.hash() and expect a string).
# Must overwrite the MagicMock that the loop above may have installed.
_ppdeep_existing = sys.modules.get("ppdeep")
if _ppdeep_existing is None or isinstance(_ppdeep_existing, MagicMock):
    _ppdeep_mod = types.ModuleType("ppdeep")
    _ppdeep_mod.__name__ = "ppdeep"

    def _ppdeep_hash(data):
        """Fake ssdeep hash — returns a deterministic placeholder."""
        if isinstance(data, str):
            data = data.encode("utf-8")
        if len(data) < 50:
            return None
        import hashlib
        h = hashlib.md5(data).hexdigest()
        return f"3:{h[:16]}:{h[16:]}"

    _ppdeep_mod.hash = _ppdeep_hash
    sys.modules["ppdeep"] = _ppdeep_mod

# Stub mmh3 if the C extension is not available
_mmh3_existing = sys.modules.get("mmh3")
if _mmh3_existing is None or isinstance(_mmh3_existing, MagicMock):
    _mmh3_mod = types.ModuleType("mmh3")
    _mmh3_mod.__name__ = "mmh3"

    def _mmh3_hash(data, seed=0):
        """Fake MurmurHash3 — deterministic hash using built-in hashlib."""
        import hashlib
        if isinstance(data, str):
            data = data.encode("utf-8")
        seed_bytes = (seed & 0xFFFFFFFF).to_bytes(8, "little")
        h = hashlib.md5(data + seed_bytes).digest()
        return int.from_bytes(h[:4], "little", signed=True)

    _mmh3_mod.hash = _mmh3_hash
    sys.modules["mmh3"] = _mmh3_mod

# Stub tlsh if the C extension is not available
if "tlsh" not in sys.modules:
    try:
        import tlsh as _real_tlsh  # noqa: F401
    except (ImportError, ModuleNotFoundError):
        _tlsh_mock = types.ModuleType("tlsh")
        _tlsh_mock.__name__ = "tlsh"

        def _tlsh_hash(data):
            """Fake TLSH hash — returns a deterministic placeholder.

            Returns empty string for data < 50 bytes or data with very
            low entropy (e.g. repeating patterns), mimicking the real
            TLSH library's "TNULL" behaviour.
            """
            if isinstance(data, str):
                data = data.encode("utf-8")
            if len(data) < 50:
                return ""
            # Real TLSH returns "" for low-entropy input
            if len(set(data)) < 8:
                return ""
            import hashlib
            return "T1" + hashlib.sha256(data).hexdigest()[:70].upper()

        _tlsh_mock.hash = _tlsh_hash
        sys.modules["tlsh"] = _tlsh_mock

# ---------------------------------------------------------------------------
# 2. Stub redb.settings (package) so module-level code never runs
# ---------------------------------------------------------------------------
_settings_mock = MagicMock()
_settings_mock.__name__ = "redb.settings"
sys.modules["redb.settings"] = _settings_mock
sys.modules["redb.settings.elasticsearch"] = MagicMock()
sys.modules["redb.settings.clickhouse"] = MagicMock()

# ---------------------------------------------------------------------------
# 3. Replace redb.extractors with a minimal package that does NOT eagerly
#    import every extractor (and their heavy deps).  Sub-module imports
#    like ``from redb.extractors.database_exporters import ...`` still work
#    because __path__ points to the real package directory.
# ---------------------------------------------------------------------------
_repo_root = Path(__file__).resolve().parents[2]
_extractors_pkg = types.ModuleType("redb.extractors")
_extractors_pkg.__path__ = [str(_repo_root / "redb" / "extractors")]
_extractors_pkg.__package__ = "redb.extractors"
sys.modules["redb.extractors"] = _extractors_pkg

# ---------------------------------------------------------------------------
# 4. Force-import redb submodules so that @patch('redb.workers.xxx'),
#    @patch('redb.queries.xxx'), etc. can resolve at decoration time.
#    This works because all heavy deps are already stubbed above.
# ---------------------------------------------------------------------------
import redb.logging_utils   # noqa: F401, E402
import redb.s3_utils         # noqa: F401, E402
import redb.queries          # noqa: F401, E402
import redb.workers          # noqa: F401, E402
import redb.ingestor         # noqa: F401, E402