Xiang-Sun Zhang

89 papers A* 1B 3C 1Misc 1Journal 71Unranked 11
YearRankTypeTitle / Venue / Authors
2021 — conf
An Optimization Method for Calibrating Wireline Conveyance Tension.
CSDM Asia / CSDM
Can Jin, Xin Peng, Qing Liu, Xinhan Ye, Lang Chen, Qiuyue Yuan, Xiang-Sun Zhang, Ling-Yun Wu, Yong Wang
2019 J jnl
Systems biology intertwines with single cell and AI.
BMC Bioinform.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2018 J jnl
Integrating data- and model-driven strategies in systems biology.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2017 J jnl
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis.
BMC Syst. Biol.
Duanchen Sun, Yinliang Liu, Xiang-Sun Zhang, Ling-Yun Wu
2017 J jnl
Understanding biological systems through the lens of data.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2016 J jnl
Quantitative function and algorithm for community detection in bipartite networks.
Inf. Sci.
Zhen-Ping Li, Rui-Sheng Wang, Shihua Zhang, Xiang-Sun Zhang
2015 J jnl
Analysis of stability of community structure across multiple hierarchical levels.
CoRR
Hui-Jia Li, Xiang-Sun Zhang
2015 J jnl
Identifying overlapping communities in social networks using multi-scale local information expansion.
CoRR
Hui-Jia Li, Junhua Zhang, Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang
2015 J jnl
NCC-AUC: an AUC optimization method to identify multi-biomarker panel for cancer prognosis from genomic and clinical data.
Bioinform.
Meng Zou, Zhaoqi Liu, Xiang-Sun Zhang, Yong Wang
2015 J jnl
Potts model based on a Markov process computation solves the community structure problem effectively.
CoRR
Hui-Jia Li, Yong Wang, Ling-Yun Wu, Junhua Zhang, Xiang-Sun Zhang
2015 J jnl
Quantitative Function and Algorithm for Community Detection in Bipartite Networks.
CoRR
Zhen-Ping Li, Rui-Sheng Wang, Shi-Hua Zhang, Xiang-Sun Zhang
2014 J jnl
Discovery of co-occurring driver pathways in cancer.
BMC Bioinform.
Junhua Zhang, Ling-Yun Wu, Xiang-Sun Zhang, Shihua Zhang
2013 J jnl
Computational systems biology in the big data era.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2013 J jnl
Corbi: a new R package for biological network alignment and querying.
BMC Syst. Biol.
Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang
2013 J jnl
Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data.
BMC Syst. Biol.
Junhua Zhang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang
2013 J jnl
Multiple birth support vector machine for multi-class classification.
Neural Comput. Appl.
Zhi-Xia Yang, Yuan-Hai Shao, Xiang-Sun Zhang
2012 J jnl
A combinatorial model and algorithm for globally searching community structure in complex networks.
J. Comb. Optim.
Xiang-Sun Zhang, Zhen-Ping Li, Rui-Sheng Wang, Yong Wang
2012 J jnl
A unified computational model for revealing and predicting subtle subtypes of cancers.
BMC Bioinform.
Xian-Wen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang
2012 — conf
CNetA: Network alignment by combining biological and topological features.
ISB
Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang
2012 J jnl
Efficient methods for identifying mutated driver pathways in cancer.
Bioinform.
Junfei Zhao, Shi-Hua Zhang, Ling-Yun Wu, Xiang-Sun Zhang
2012 — conf
Identifying mutated core modules in glioblastoma by integrative network analysis.
ISB
Junhua Zhang, Shi-Hua Zhang, Yong Wang, Junfei Zhao, Xiang-Sun Zhang
2012 J jnl
Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs.
BMC Bioinform.
Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K. K. Leung, Xiang-Sun Zhang, Stephen Kwok-Wing Tsui, Luonan Chen
2012 J jnl
Inferring domain-domain interactions from protein-protein interactions in the complex network conformation.
BMC Syst. Biol.
Chen Chen, Junfei Zhao, Qiang Huang, Rui-Sheng Wang, Xiang-Sun Zhang
2012 J jnl
Modelling biological systems from molecules to dynamical networks.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2012 J jnl
Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection.
BMC Syst. Biol.
Yong Wang, Qiao-Feng Wu, Chen Chen, Ling-Yun Wu, Xian-Zhong Yan, Shuguang Yu, Xiang-Sun Zhang, Fan-Rong Liang
2011 J jnl
An efficient network querying method based on conditional random fields.
Bioinform.
Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang
2011 J jnl
Co-community Structure in Multiple Evolving Networks
CoRR
Shi-Hua Zhang, Junfei Zhao, Xiang-Sun Zhang
2011 J jnl
Computational systems biology: integration of sequence, structure, network, and dynamics.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2011 J jnl
Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation.
BMC Bioinform.
Xian-Wen Ren, Yong-Cui Wang, Yong Wang, Xiang-Sun Zhang, Nai-Yang Deng
2011 — conf
Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis.
ICIC (3)
Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K. K. Leung, Xiang-Sun Zhang, Stephen Kwok-Wing Tsui, Luonan Chen
2011 J jnl
Two-stage flux balance analysis of metabolic networks for drug target identification.
BMC Syst. Biol.
Zhen-Ping Li, Rui-Sheng Wang, Xiang-Sun Zhang
2010 J jnl
A linear programming model based on network flow for pathway inference.
J. Syst. Sci. Complex.
Xian-Wen Ren, Xiang-Sun Zhang
2010 J jnl
An information-flow-based model with dissipation, saturation and direction for active pathway inference.
BMC Syst. Biol.
Xian-Wen Ren, Xiaobo Zhou, Ling-Yun Wu, Xiang-Sun Zhang
2010 J jnl
Binary matrix factorization for analyzing gene expression data.
Data Min. Knowl. Discov.
Zhongyuan Zhang, Tao Li, Chris H. Q. Ding, Xian-Wen Ren, Xiang-Sun Zhang
2010 J jnl
Detecting community structure: From parsimony to weighted parsimony.
J. Syst. Sci. Complex.
Junhua Zhang, Yu-Qing Qiu, Xiang-Sun Zhang
2010 J jnl
Detecting disease associated modules and prioritizing active genes based on high throughput data.
BMC Bioinform.
Yu-Qing Qiu, Shi-Hua Zhang, Xiang-Sun Zhang, Luonan Chen
2010 J jnl
Determining modular organization of protein interaction networks by maximizing modularity density.
BMC Syst. Biol.
Shi-Hua Zhang, Xue-Mei Ning, Chris H. Q. Ding, Xiang-Sun Zhang
2010 J jnl
Editorial.
J. Syst. Sci. Complex.
Luonan Chen, Xiang-Sun Zhang
2010 J jnl
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains.
BMC Syst. Biol.
Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2010 Misc conf
Inferring gene regulatory networks from expression data with prior knowledge by linear programming.
ICMLC
Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen
2010 J jnl
Optimization meets systems biology.
BMC Syst. Biol.
Yong Wang, Xiang-Sun Zhang, Luonan Chen
2010 J jnl
Prediction of protein-RNA binding sites by a random forest method with combined features.
Bioinform.
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2010 J jnl
Self-organizing map of complex networks for community detection.
J. Syst. Sci. Complex.
Zhen-Ping Li, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen
2009 J jnl
A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.
Int. J. Data Min. Bioinform.
Shi-Hua Zhang, Hongwei Liu, Xue-Mei Ning, Xiang-Sun Zhang
2009 J jnl
Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases.
PLoS Comput. Biol.
Jiguang Wang, Shi-Hua Zhang, Yong Wang, Luonan Chen, Xiang-Sun Zhang
2009 B conf
Dynamically dysfunctional protein interactions in the development of Alzheimer's disease.
SMC
Zhi-Ping Liu, Yong Wang, Tieqiao Wen, Xiang-Sun Zhang, Weiming Xia, Luonan Chen
2009 J jnl
Evaluating Protein Similarity from Coarse Structures.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yong Wang, Ling-Yun Wu, Ji-Hong Zhang, Zhong-Wei Zhan, Xiang-Sun Zhang, Luonan Chen
2009 — ch.
Fuzzy System Methods in Modeling Gene Expression and Analyzing Protein Networks.
Fuzzy Systems in Bioinformatics and Computational Biology
Shi-Hua Zhang, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen
2009 J jnl
Modeling post-transcriptional regulation activity of small non-coding RNAs in
BMC Bioinform.
Rui-Sheng Wang, Guangxu Jin, Xiang-Sun Zhang, Luonan Chen
2009 J jnl
Self-organizing map approaches for the haplotype assembly problem.
Math. Comput. Simul.
Ling-Yun Wu, Zhen-Ping Li, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen
2008 J jnl
A fast haplotype inference method for large population genotype data.
Comput. Stat. Data Anal.
Ji-Hong Zhang, Ling-Yun Wu, Jian Chen, Xiang-Sun Zhang
2008 J jnl
Biomolecular network querying: a promising approach in systems biology.
BMC Syst. Biol.
Shihua Zhang, Xiang-Sun Zhang, Luonan Chen
2008 J jnl
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures.
Neurocomputing
Rui-Sheng Wang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2008 J jnl
Protein cavity clustering based on community structure of pocket similarity network.
Int. J. Bioinform. Res. Appl.
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2008 J jnl
Recognition of Structure Similarities in Proteins.
J. Syst. Sci. Complex.
Lin Wang, Yu-Qing Qiu, Jiguang Wang, Xiang-Sun Zhang
2008 — conf
Reconstruction of Regulator Activity in E. coli Post-Transcription Processes.
BIBM
Rui-Sheng Wang, Guangxu Jin, Xiang-Sun Zhang, Luonan Chen
2008 J jnl
Remarks on Network Community Properties.
J. Syst. Sci. Complex.
Jiguang Wang, Yu-Qing Qiu, Rui-Sheng Wang, Xiang-Sun Zhang
2007 J jnl
Alignment of molecular networks by integer quadratic programming.
Bioinform.
Zhen-Ping Li, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007 J jnl
An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors.
Eur. J. Oper. Res.
Ji-Hong Zhang, Ling-Yun Wu, Yu-Ying Zhao, Xiang-Sun Zhang
2007 J jnl
Analysis on multi-domain cooperation for predicting protein-protein interactions.
BMC Bioinform.
Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
2007 A* conf
Binary Matrix Factorization with Applications.
ICDM
Zhongyuan Zhang, Tao Li, Chris H. Q. Ding, Xiang-Sun Zhang
2007 J jnl
Convergence analysis of adaptive trust region methods.
RAIRO Oper. Res.
Zhen-Jun Shi, Xiang-Sun Zhang, Jie Shen
2007 — conf
Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering.
PAKDD Workshops
Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007 — conf
Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks.
ICIC (2)
Rui-Sheng Wang, Shi-Hua Zhang, Xiang-Sun Zhang, Luonan Chen
2007 J jnl
Inferring transcriptional regulatory networks from high-throughput data.
Bioinform.
Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007 J jnl
Predicting gene ontology functions from protein's regional surface structures.
BMC Bioinform.
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang
2007 J jnl
Supervised classification of protein structures based on convex hull representation.
Int. J. Bioinform. Res. Appl.
Yong Wang, Ling-Yun Wu, Luonan Chen, Xiang-Sun Zhang
2006 — conf
A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks.
ICDM Workshops
Shi-Hua Zhang, Hongwei Liu, Xue-Mei Ning, Xiang-Sun Zhang
2006 J jnl
A smoothing Levenberg-Marquardt method for NCP.
Appl. Math. Comput.
Ju-Liang Zhang, Xiang-Sun Zhang
2006 — conf
Alignment of Protein Interaction Networks by Integer Quadratic Programming.
EMBC
Zhen-Ping Li, Yong Wang, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen
2006 C conf
Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network.
TAMC
Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
2006 J jnl
Capacitated facility location problem with general setup cost.
Comput. Oper. Res.
Ling-Yun Wu, Xiang-Sun Zhang, Ju-Liang Zhang
2006 J jnl
Identification of functional modules in a PPI network by clique percolation clustering.
Comput. Biol. Chem.
Shi-Hua Zhang, Xue-Mei Ning, Xiang-Sun Zhang
2006 J jnl
Inferring gene regulatory networks from multiple microarray datasets.
Bioinform.
Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen
2006 — conf
Prediction of Protein Complexes Based on Protein Interaction Data and Functional Annotation Data Using Kernel Methods.
ICIC (3)
Shi-Hua Zhang, Xue-Mei Ning, Hongwei Liu, Xiang-Sun Zhang
2006 — conf
Supervised Inference of Gene Regulatory Networks by Linear Programming.
ICIC (3)
Yong Wang, Trupti Joshi, Dong Xu, Xiang-Sun Zhang, Luonan Chen
2005 J jnl
A parsimonious tree-grow method for haplotype inference.
Bioinform.
Zhen-Ping Li, Wenfeng Zhou, Xiang-Sun Zhang, Luonan Chen
2005 J jnl
Aligning Multiple Protein Structures by Deterministic Annealing.
J. Bioinform. Comput. Biol.
Tianshou Zhou, Luonan Chen, Yun Tang, Xiang-Sun Zhang
2005 J jnl
Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping.
J. Bioinform. Comput. Biol.
Xiang-Sun Zhang, Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu, Luonan Chen
2005 J jnl
Haplotype assembly from aligned weighted SNP fragments.
Comput. Biol. Chem.
Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang, Xiang-Sun Zhang
2005 J jnl
Haplotype reconstruction from SNP fragments by minimum error correction.
Bioinform.
Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, Xiang-Sun Zhang
2003 J jnl
Reconstruction of DNA sequencing by hybridization.
Bioinform.
Ji-Hong Zhang, Ling-Yun Wu, Xiang-Sun Zhang
2001 J jnl
A Modified SQP Method with Nonmonotone Linesearch Technique.
J. Glob. Optim.
Ju-Liang Zhang, Xiang-Sun Zhang
2000 J jnl
Test Problem Generator by Neural Network for Algorithms that Try Solving Nonlinear Programming Problems Globally.
J. Glob. Optim.
De-Gang Liu, Xiang-Sun Zhang
1994 B conf
A Neural Network Model for Quadratic Programming with Simple Upper and Lower Bounds and its Application to Linear Programming.
ISAAC
Xiang-Sun Zhang, Hui-Can Zhu
1994 B ed.
Algorithms and Computation, 5th International Symposium, ISAAC '94, Beijing, P. R. China, August 25-27, 1994, Proceedings
ISAAC
Ding-Zhu Du, Xiang-Sun Zhang
1990 J jnl
A Note on the Continuity of Solutions of Parametric Linear Programs.
Math. Program.
Xiang-Sun Zhang, De-Gang Liu
1989 J jnl
Global convergence of Rosen's gradient projection method.
Math. Program.
Ding-Zhu Du, Xiang-Sun Zhang
1986 J jnl
A convergence theorem of Rosen's gradient projection method.
Math. Program.
Ding-Zhu Du, Xiang-Sun Zhang