Xia Li

104 papers C 3Misc 1Journal 79Unranked 21
YearRankTypeTitle / Venue / Authors
2025 J jnl
Drug discovery for chemotherapeutic resistance based on pathway-responsive gene sets and its application in breast cancer.
Frontiers Bioinform.
Dehua Feng, Jingwen Hao, Lingxu Li, Jian Chen, Xinying Liu, Ruijie Zhang, Huirui Han, Tianyi Li, Xuefeng Wang, Xia Li, Lei Yu, Bing Li, Jin Li, Limei Wang
2024 J jnl
AVM: A Manually Curated Database of Aerosol-transmitted Virus Mutations, Human Diseases, and Drugs.
Genom. Proteom. Bioinform.
Lan Mei, Yaopan Hou, Jiajun Zhou, Yetong Chang, Yuwei Liu, Di Wang, Yunpeng Zhang, Shangwei Ning, Xia Li
2024 J jnl
Comprehensive quantitative radiogenomic evaluation reveals novel radiomic subtypes with distinct immune pattern in glioma.
Comput. Biol. Medicine
Yue Sun, Yakun Zhang, Jing Gan, Hanxiao Zhou, Shuang Guo, Xinyue Wang, Caiyu Zhang, Wen Zheng, Xiaoxi Zhao, Xia Li, Li Wang, Shangwei Ning
2024 J jnl
Identifying cell type-specific transcription factor-mediated activity immune modules reveal implications for immunotherapy and molecular classification of pan-cancer.
Briefings Bioinform.
Feng Li, Jingwen Wang, Mengyue Li, Xiaomeng Zhang, Yongjuan Tang, Xinyu Song, Yifang Zhang, Liying Pei, Jiaqi Liu, Chunlong Zhang, Xia Li, Yanjun Xu, Yunpeng Zhang
2024 J jnl
Mapping enhancer and chromatin accessibility landscapes charts the regulatory network of Alzheimer's disease.
Comput. Biol. Medicine
Dahua Xu, Chunrui Zhang, Xiaoman Bi, Jiankai Xu, Shengnan Guo, Peihu Li, Yutong Shen, Jiale Cai, Nihui Zhang, Guanghui Tian, Haifei Zhang, Hong Wang, Qifu Li, Hongyan Jiang, Bo Wang, Xia Li, Yongsheng Li, Kongning Li
2023 J jnl
CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data.
Nucleic Acids Res.
Congxue Hu, Tengyue Li, Yingqi Xu, Xinxin Zhang, Feng Li, Jing Bai, Jing Chen, Wenqi Jiang, Kaiyue Yang, Qi Ou, Xia Li, Peng Wang, Yunpeng Zhang
2023 J jnl
CellTracer: a comprehensive database to dissect the causative multilevel interplay contributing to cell development trajectories.
Nucleic Acids Res.
Qiuyan Guo, Peng Wang, Qian Liu, Yangyang Hao, Yue Gao, Yue Qi, Rongji Xu, Hongyan Chen, Mengyu Xin, Xiaoting Wu, Rui Sun, Hui Zhi, Yunpeng Zhang, Shangwei Ning, Xia Li
2023 J jnl
IEAtlas: an atlas of HLA-presented immune epitopes derived from non-coding regions.
Nucleic Acids Res.
Yangyang Cai, Dezhong Lv, Donghao Li, Jiaqi Yin, Yingying Ma, Ya Luo, Limei Fu, Na Ding, Yongsheng Li, Zhenwei Pan, Xia Li, Juan Xu
2023 J jnl
Open a new epoch of arsenic trioxide investigation: ATOdb.
Comput. Biol. Medicine
Yanan Jiang, Jianing Li, Yujie Liu, Xiuyun Shen, Junyi Li, Fengnan Zhi, Juan Xu, Xia Li, Tingting Shao, Yingqi Xu
2023 J jnl
Tumor biology, immune infiltration and liver function define seven hepatocellular carcinoma subtypes linked to distinct drivers, survival and drug response.
Comput. Biol. Medicine
Ruihong Wu, Yue Gao, Xiaoxi Zhao, Shuang Guo, Hanxiao Zhou, Yakun Zhang, Yaopan Hou, Lan Mei, Hui Zhi, Peng Wang, Xia Li, Shangwei Ning, Yunpeng Zhang
2022 J jnl
AgingBank: a manually curated knowledgebase and high-throughput analysis platform that provides experimentally supported multi-omics data relevant to aging in multiple species.
Briefings Bioinform.
Yue Gao, Shipeng Shang, Shuang Guo, Xinyue Wang, Hanxiao Zhou, Yue Sun, Jing Gan, Yakun Zhang, Xia Li, Shangwei Ning, Yunpeng Zhang
2022 J jnl
Comprehensive characterization genetic regulation and chromatin landscape of enhancer-associated long non-coding RNAs and their implication in human cancer.
Briefings Bioinform.
Xin Li, Xu Pan, Hanxiao Zhou, Peng Wang, Yue Gao, Shipeng Shang, Shuang Guo, Jie Sun, Zhiying Xiong, Shangwei Ning, Hui Zhi, Xia Li
2022 J jnl
HCDT: an integrated highly confident drug-target resource.
Database J. Biol. Databases Curation
Jiaqi Chen, Zhengxin Chen, Rufei Chen, Dehua Feng, Tianyi Li, Huirui Han, Xiaoman Bi, Zhenzhen Wang, Kongning Li, Yongsheng Li, Xia Li, Limei Wang, Jin Li
2022 J jnl
Identifying and characterizing drug sensitivity-related lncRNA-TF-gene regulatory triplets.
Briefings Bioinform.
Congxue Hu, Yingqi Xu, Feng Li, Wanqi Mi, He Yu, Xinran Wang, Xin Wen, Shuaijun Chen, Xia Li, Yanjun Xu, Yunpeng Zhang
2022 J jnl
LncACTdb 3.0: an updated database of experimentally supported ceRNA interactions and personalized networks contributing to precision medicine.
Nucleic Acids Res.
Peng Wang, Qiuyan Guo, Yue Qi, Yangyang Hao, Yue Gao, Hui Zhi, Yuanfu Zhang, Yue Sun, Yakun Zhang, Mengyu Xin, Yunpeng Zhang, Shangwei Ning, Xia Li
2022 J jnl
PRES: a webserver for decoding the functional perturbations of RNA editing sites.
Briefings Bioinform.
Dezhong Lv, Kang Xu, Changbo Yang, Yujie Liu, Ya Luo, Weiwei Zhou, Haozhe Zou, Yangyang Cai, Na Ding, Xia Li, Tingting Shao, Yongsheng Li, Juan Xu
2022 J jnl
Resequencing 250 Soybean Accessions: New Insights into Genes Associated with Agronomic Traits and Genetic Networks.
Genom. Proteom. Bioinform.
Chunming Yang, Jun Yan, Shuqin Jiang, Xia Li, Haowei Min, Xiangfeng Wang, Dongyun Hao
2022 J jnl
Revealing the contribution of somatic gene mutations to shaping tumor immune microenvironment.
Briefings Bioinform.
Liwen Xu, Shiwei Zhu, Yujia Lan, Min Yan, Zedong Jiang, Jiali Zhu, Gaoming Liao, Yanyan Ping, Jinyuan Xu, Bo Pang, Yunpeng Zhang, Yun Xiao, Xia Li
2022 J jnl
TransLnc: a comprehensive resource for translatable lncRNAs extends immunopeptidome.
Nucleic Acids Res.
Dezhong Lv, Zhenghong Chang, Yangyang Cai, Junyi Li, Liping Wang, Qiushuang Jiang, Kang Xu, Na Ding, Xia Li, Juan Xu, Yongsheng Li
2021 J jnl
A Novel Multi-Ensemble Method for Identifying Essential Proteins.
J. Comput. Biol.
Wei Dai, Bingxi Chen, Wei Peng, Xia Li, Jiancheng Zhong, Jianxin Wang
2021 J jnl
CeRNASeek: an R package for identification and analysis of ceRNA regulation.
Briefings Bioinform.
Mengying Zhang, Xiyun Jin, Junyi Li, Yi Tian, Qi Wang, Xinhui Li, Juan Xu, Yongsheng Li, Xia Li
2021 J jnl
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.
Nucleic Acids Res.
Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, LiLi Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir Ali Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo
2021 J jnl
LincSNP 3.0: an updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements.
Nucleic Acids Res.
Yue Gao, Xin Li, Shipeng Shang, Shuang Guo, Peng Wang, Dailin Sun, Jing Gan, Jie Sun, Yakun Zhang, Junwei Wang, Xinyue Wang, Xia Li, Yunpeng Zhang, Shangwei Ning
2021 J jnl
LnCeCell: a comprehensive database of predicted lncRNA-associated ceRNA networks at single-cell resolution.
Nucleic Acids Res.
Peng Wang, Qiuyan Guo, Yangyang Hao, Qian Liu, Yue Gao, Hui Zhi, Xin Li, Shipeng Shang, Shuang Guo, Yunpeng Zhang, Shangwei Ning, Xia Li
2021 J jnl
Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data.
Nucleic Acids Res.
Yue Gao, Shipeng Shang, Shuang Guo, Xin Li, Hanxiao Zhou, Hongjia Liu, Yue Sun, Junwei Wang, Peng Wang, Hui Zhi, Xia Li, Shangwei Ning, Yunpeng Zhang
2021 J jnl
Research on Restoration Algorithm of Tomb Murals Based on Sequential Similarity Detection.
Sci. Program.
Wang Liu, Xia Li, Fengjiao Wu
2021 J jnl
SurvivalMeth: a web server to investigate the effect of DNA methylation-related functional elements on prognosis.
Briefings Bioinform.
Chunlong Zhang, Ning Zhao, Xue Zhang, Jun Xiao, Junyi Li, Dezhong Lv, Weiwei Zhou, Yongsheng Li, Juan Xu, Xia Li
2020 J jnl
A comprehensive overview of oncogenic pathways in human cancer.
Briefings Bioinform.
Feng Li, Tan Wu, Yanjun Xu, Qun Dong, Jing Xiao, Yingqi Xu, Qian Li, Chunlong Zhang, Jianxia Gao, Liqiu Liu, Xiaoxu Hu, Jian Huang, Xia Li, Yunpeng Zhang
2020 Misc conf
Construct the Students' Consumption Portrait Based on Large-scale Campus Data.
ICMLC
Heng Li, Xiao Zhang, Xia Li, Yanqiu Wang, Yulong Ling, Di Mu
2020 J jnl
Highly Precise Birefringence Demodulation to Overcome the Sensing Limitation From the Free Spectral Range on the Fiber Lyot Filter.
IEEE Access
Wei Li, Tiantian Ruan, Min Xia, Xia Li
2020 J jnl
Identification and comprehensive characterization of lncRNAs with copy number variations and their driving transcriptional perturbed subpathways reveal functional significance for cancer.
Briefings Bioinform.
Yanjun Xu, Tan Wu, Feng Li, Qun Dong, Jingwen Wang, Desi Shang, Yingqi Xu, Chunlong Zhang, Yiying Dou, Congxue Hu, Haixiu Yang, Xuan Zheng, Yunpeng Zhang, Lihua Wang, Xia Li
2020 J jnl
LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation.
Nucleic Acids Res.
Peng Wang, Xin Li, Yue Gao, Qiuyan Guo, Shangwei Ning, Yunpeng Zhang, Shipeng Shang, Junwei Wang, Yanxia Wang, Hui Zhi, Ying Fang, Weitao Shen, Guangmei Zhang, Steven Xi Chen, Xia Li
2020 J jnl
LncTarD: a manually-curated database of experimentally-supported functional lncRNA?target regulations in human diseases.
Nucleic Acids Res.
Hongying Zhao, Jian Shi, Yunpeng Zhang, Aimin Xie, Lei Yu, Caiyu Zhang, Junjie Lei, Haotian Xu, Zhijun Leng, Tengyue Li, Waidong Huang, Shihua Lin, Li Wang, Yun Xiao, Xia Li
2020 J jnl
RNAactDrug: a comprehensive database of RNAs associated with drug sensitivity from multi-omics data.
Briefings Bioinform.
Qun Dong, Feng Li, Yanjun Xu, Jing Xiao, Yingqi Xu, Desi Shang, Chunlong Zhang, Haixiu Yang, Zihan Tian, Kai Mi, Xia Li, Yunpeng Zhang
2019 — conf
An Effective Method to Improve the Accuracy of Precise Funding in Campus.
CSAE
Heng Li, Xiao Zhang, Xia Li, Yanqiu Wang
2019 J jnl
Breast cancer prognosis signature: linking risk stratification to disease subtypes.
Briefings Bioinform.
Fulong Yu, Fei Quan, Jinyuan Xu, Yan Zhang, Yi Xie, Jingyu Zhang, Yujia Lan, Huating Yuan, Hongyi Zhang, Shujun Cheng, Yun Xiao, Xia Li
2019 J jnl
CancerSEA: a cancer single-cell state atlas.
Nucleic Acids Res.
Huating Yuan, Min Yan, Guanxiong Zhang, Wei Liu, Chunyu Deng, Gaoming Liao, Liwen Xu, Tao Luo, Haoteng Yan, Zhilin Long, Aiai Shi, Tingting Zhao, Yun Xiao, Xia Li
2019 J jnl
CellMarker: a manually curated resource of cell markers in human and mouse.
Nucleic Acids Res.
Xinxin Zhang, Yujia Lan, Jinyuan Xu, Fei Quan, Erjie Zhao, Chunyu Deng, Tao Luo, Liwen Xu, Gaoming Liao, Min Yan, Yanyan Ping, Feng Li, Aiai Shi, Jing Bai, Tingting Zhao, Xia Li, Yun Xiao
2019 J jnl
Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability.
Briefings Bioinform.
Yulan Deng, Shangyi Luo, Chunyu Deng, Tao Luo, Wenkang Yin, Hongyi Zhang, Yong Zhang, Xinxin Zhang, Yujia Lan, Yanyan Ping, Yun Xiao, Xia Li
2019 — conf
Improving Identification of Essential Proteins by a Novel Ensemble Method.
ISBRA
Wei Dai, Xia Li, Wei Peng, Jurong Song, Jiancheng Zhong, Jianxin Wang
2019 J jnl
Landscape of the long non-coding RNA transcriptome in human heart.
Briefings Bioinform.
Chunjie Jiang, Na Ding, Junyi Li, Xiyun Jin, Lili Li, Tao Pan, Caiqin Huo, Yongsheng Li, Juan Xu, Xia Li
2019 J jnl
Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers.
Nucleic Acids Res.
Yue Gao, Peng Wang, Yanxia Wang, Xueyan Ma, Hui Zhi, Dianshuang Zhou, Xin Li, Ying Fang, Weitao Shen, Yingqi Xu, Shipeng Shang, Lihua Wang, Li Wang, Shangwei Ning, Xia Li
2019 J jnl
LncACTdb 2.0: an updated database of experimentally supported ceRNA interactions curated from low- and high-throughput experiments.
Nucleic Acids Res.
Peng Wang, Xin Li, Yue Gao, Qiuyan Guo, Yanxia Wang, Ying Fang, Xueyan Ma, Hui Zhi, Dianshuang Zhou, Weitao Shen, Weisha Liu, Lihua Wang, Yunpeng Zhang, Shangwei Ning, Xia Li
2019 J jnl
Survey of miRNA-miRNA cooperative regulation principles across cancer types.
Briefings Bioinform.
Tingting Shao, Guangjuan Wang, Hong Chen, Yunjin Xie, Xiyun Jin, Jing Bai, Juan Xu, Xia Li, Jian Huang, Yan Jin, Yongsheng Li
2019 J jnl
Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases.
Briefings Bioinform.
Yongsheng Li, Caiqin Huo, Tao Pan, Lili Li, Xiyun Jin, Xiaoyu Lin, Juan Chen, Jinwen Zhang, Zheng Guo, Juan Xu, Xia Li
2018 J jnl
Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes.
Briefings Bioinform.
Juan Xu, Zishan Wang, Shengli Li, Juan Chen, Jinwen Zhang, Chunjie Jiang, Zheng Zhao, Jing Li, Yongsheng Li, Xia Li
2018 J jnl
DiseaseEnhancer: a resource of human disease-associated enhancer catalog.
Nucleic Acids Res.
Guanxiong Zhang, Jian Shi, Shiwei Zhu, Yujia Lan, Liwen Xu, Huating Yuan, Gaoming Liao, Xiaoqin Liu, Yunpeng Zhang, Yun Xiao, Xia Li
2018 J jnl
LnChrom: a resource of experimentally validated lncRNA-chromatin interactions in human and mouse.
Database J. Biol. Databases Curation
Fulong Yu, Guanxiong Zhang, Aiai Shi, Jing Hu, Feng Li, Xinxin Zhang, Yan Zhang, Jian Huang, Yun Xiao, Xia Li, Shujun Cheng
2018 J jnl
Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease.
Nucleic Acids Res.
Hui Zhi, Xin Li, Peng Wang, Yue Gao, Baoqing Gao, Dianshuang Zhou, Yan Zhang, Maoni Guo, Ming Yue, Weitao Shen, Shangwei Ning, Lianhong Jin, Xia Li
2018 J jnl
MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases.
Nucleic Acids Res.
Ming Yue, Dianshuang Zhou, Hui Zhi, Peng Wang, Yan Zhang, Yue Gao, Maoni Guo, Xin Li, Yanxia Wang, Yunpeng Zhang, Shangwei Ning, Xia Li
2018 J jnl
SEECancer: a resource for somatic events in evolution of cancer genome.
Nucleic Acids Res.
Hongyi Zhang, Shangyi Luo, Xinxin Zhang, Jianlong Liao, Fei Quan, Erjie Zhao, Chenfen Zhou, Fulong Yu, Wenkang Yin, Yunpeng Zhang, Yun Xiao, Xia Li
2017 J jnl
A comprehensive overview of lncRNA annotation resources.
Briefings Bioinform.
Jinyuan Xu, Jing Bai, Xinxin Zhang, Yanling Lv, Yonghui Gong, Ling Liu, Hongying Zhao, Fulong Yu, Yanyan Ping, Guanxiong Zhang, Yujia Lan, Yun Xiao, Xia Li
2017 J jnl
BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases.
Database J. Biol. Databases Curation
Yanjun Xu, Haixiu Yang, Tan Wu, Qun Dong, Zeguo Sun, Desi Shang, Feng Li, Yingqi Xu, Fei Su, Siyao Liu, Yunpeng Zhang, Xia Li
2017 J jnl
LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs.
Nucleic Acids Res.
Shangwei Ning, Ming Yue, Peng Wang, Yue Liu, Hui Zhi, Yan Zhang, Jizhou Zhang, Yue Gao, Maoni Guo, Dianshuang Zhou, Xin Li, Xia Li
2017 J jnl
miRNA-miRNA crosstalk: from genomics to phenomics.
Briefings Bioinform.
Juan Xu, Tingting Shao, Na Ding, Yongsheng Li, Xia Li
2016 J jnl
Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers.
Nucleic Acids Res.
Shangwei Ning, Jizhou Zhang, Peng Wang, Hui Zhi, Jianjian Wang, Yue Liu, Yue Gao, Maoni Guo, Ming Yue, Lihua Wang, Xia Li
2015 J jnl
Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data.
Database J. Biol. Databases Curation
Zheng Zhao, Jing Bai, Aiwei Wu, Yuan Wang, Jinwen Zhang, Zishan Wang, Yongsheng Li, Juan Xu, Xia Li
2015 J jnl
Identifying novel associations between small molecules and miRNAs based on integrated molecular networks.
Bioinform.
Yingli Lv, Shuyuan Wang, Fanlin Meng, Lei Yang, Zhifeng Wang, Jing Wang, Xiaowen Chen, Wei Jiang, Yixue Li, Xia Li
2015 J jnl
Prediction of potential disease-associated microRNAs based on random walk.
Bioinform.
Ping Xuan, Ke Han, Yahong Guo, Jin Li, Xia Li, Yingli Zhong, Zhaogong Zhang, Jian Ding
2015 J jnl
ViRBase: a resource for virus-host ncRNA-associated interactions.
Nucleic Acids Res.
Yanhui Li, Changliang Wang, Zhengqiang Miao, Xiaoman Bi, Deng Wu, Nana Jin, Liqiang Wang, Hao Wu, Kun Qian, Chunhua Li, Ting Zhang, Chunrui Zhang, Ying Yi, Hongyan Lai, Yongfei Hu, Lixin Cheng, Kwong-Sak Leung, Xiaobo Li, Fengmin Zhang, Kongning Li, Xia Li, Dong Wang
2015 J jnl
miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs.
Database J. Biol. Databases Curation
Peng Wang, Hui Zhi, Yunpeng Zhang, Yue Liu, Jizhou Zhang, Yue Gao, Maoni Guo, Shangwei Ning, Xia Li
2014 J jnl
EpimiR: a database of curated mutual regulation between miRNAs and epigenetic modifications.
Database J. Biol. Databases Curation
Enyu Dai, Xuexin Yu, Yan Zhang, Fanlin Meng, Shuyuan Wang, Xinyi Liu, Dianming Liu, Jing Wang, Xia Li, Wei Jiang
2014 J jnl
LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs.
BMC Bioinform.
Shangwei Ning, Zuxianglan Zhao, Jingrun Ye, Peng Wang, Hui Zhi, Ronghong Li, Tingting Wang, Xia Li
2014 J jnl
The detection of risk pathways, regulated by miRNAs, via the integration of sample-matched miRNA-mRNA profiles and pathway structure.
J. Biomed. Informatics
Jing Li, Chunquan Li, Junwei Han, Chunlong Zhang, Desi Shang, Qianlan Yao, Yunpeng Zhang, Yanjun Xu, Wei Liu, Meng Zhou, Haixiu Yang, Fei Su, Xia Li
2013 J jnl
Identification of active transcription factor and miRNA regulatory pathways in Alzheimer's disease.
Bioinform.
Wei Jiang, Yan Zhang, Fanlin Meng, Baofeng Lian, Xiaowen Chen, Xuexin Yu, Enyu Dai, Shuyuan Wang, Xinyi Liu, Xiang Li, Lihong Wang, Xia Li
2013 J jnl
SM2miR: a database of the experimentally validated small molecules' effects on microRNA expression.
Bioinform.
Xinyi Liu, Shuyuan Wang, Fanlin Meng, Jizhe Wang, Yan Zhang, Enyu Dai, Xuexin Yu, Xia Li, Wei Jiang
2013 J jnl
Topologically inferring risk-active pathways toward precise cancer classification by directed random walk.
Bioinform.
Wei Liu, Chunquan Li, Yanjun Xu, Haixiu Yang, Qianlan Yao, Junwei Han, Desi Shang, Chunlong Zhang, Fei Su, Xiaoxi Li, Yun Xiao, Fan Zhang, Meng Dai, Xia Li
2013 J jnl
Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes.
BMC Syst. Biol.
Hongbo Shi, Juan Xu, Guangde Zhang, Liangde Xu, Chunquan Li, Li Wang, Zheng Zhao, Wei Jiang, Zheng Guo, Xia Li
2012 J jnl
Dissection of human MiRNA regulatory influence to subpathway.
Briefings Bioinform.
Xia Li, Wei Jiang, Wei Li, Baofeng Lian, Shuyuan Wang, Mingzhi Liao, Xiaowen Chen, Yanqiu Wang, Yingli Lv, Shiyuan Wang, Lei Yang
2012 J jnl
Screening for cancer associated MiRNAs through co-gene, co-function and co-pathway analysis.
Comput. Biol. Medicine
Xue Xiao, Dongguo Li, Lei Gao, Xia Li, Qianghu Wang, Shaojun Zhang, Zhicheng Liu
2011 J jnl
A novel network-based method for measuring the functional relationship between gene sets.
Bioinform.
Qianghu Wang, Jie Sun, Meng Zhou, Haixiu Yang, Yan Li, Xiang Li, Sali Lv, Xia Li, Yixue Li
2011 J jnl
A robust approach based on Weibull distribution for clustering gene expression data.
Algorithms Mol. Biol.
Huakun Wang, Zhenzhen Wang, Xia Li, Binsheng Gong, Lixin Feng, Ying Zhou
2011 J jnl
A sub-pathway-based approach for identifying drug response principal network.
Bioinform.
Xiujie Chen, Jiankai Xu, Bangqing Huang, Jin Li, Xin Wu, Ling Ma, Xiaodong Jia, Xiusen Bian, Fujian Tan, Lei Liu, Sheng Chen, Xia Li
2011 J jnl
DOSim: An R package for similarity between diseases based on Disease Ontology.
BMC Bioinform.
Jiang Li, Bingsheng Gong, Xi Chen, Tao Liu, Chao Wu, Fan Zhang, Chunquan Li, Xiang Li, Shaoqi Rao, Xia Li
2010 J jnl
Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test.
BMC Syst. Biol.
Chao Wu, Fan Zhang, Xia Li, Shihua Zhang, Jiang Li, Fei Su, Kongning Li, Yuqing Yan
2009 — conf
A Novel Method to Select High-risk Disease-Related Regions after a Genome Wide Haplotype-Based Association Study: An Application to Alcoholism.
FSKD (5)
Guiyou Liu, Yongshuai Jiang, Ruijie Zhang, Zhen Wang, Mingming Zhang, Ruimin Zhang, Xia Li
2009 — conf
Clinical Information Driven Ensemble Clustering for Inferring Robust Tumor Subtypes.
BMEI
Haiyun Wang, Min Ding, Xia Li, Bairong Shen
2009 — conf
Global Similarity and Local Variance in Human Gene Coexpression Networks.
AICI
Ivan Krivosheev, Lei Du, Hongzhi Wang, Shaojun Zhang, Yadong Wang, Xia Li
2009 J jnl
Prioritizing risk pathways: a novel association approach to searching for disease pathways fusing SNPs and pathways.
Bioinform.
Lina Chen, Liangcai Zhang, Yan Zhao, Liangde Xu, Yukui Shang, Qian Wang, Wan Li, Hong Wang, Xia Li
2008 — conf
A SNP and KEGG Based Approach to Mine Risk Pathways Associated with Bipolar Disorder.
ICNC (5)
Liangcai Zhang, Lina Chen, Yan Zhao, Liangde Xu, Yukui Shang, Qian Wang, Xia Li
2008 — conf
A Systematic Method Based on Haplotype Analysis: Application to Risk Alleles and Genes Mining for RA.
ICNC (5)
Rui-jie Zhang, Yong-shuai Jian, Guiyou Liu, Zhen Wang, Xia Li, Zhiqiang Chen, Jin Li, Chen Huang
2008 J jnl
Apparently low reproducibility of true differential expression discoveries in microarray studies.
Bioinform.
Min Zhang, Chen Yao, Zheng Guo, Jinfeng Zou, Lin Zhang, Hui Xiao, Dong Wang, Da Yang, Xue Gong, Jing Zhu, Yanhui Li, Xia Li
2008 J jnl
Constructing disease-specific gene networks using pair-wise relevance metric: Application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements.
BMC Syst. Biol.
Wei Jiang, Xia Li, Shaoqi Rao, Lihong Wang, Lei Du, Chuanxing Li, Chao Wu, Hongzhi Wang, Yadong Wang, Baofeng Yang
2008 J jnl
Towards patterns tree of gene coexpression in eukaryotic species.
Bioinform.
Haiyun Wang, Qi Wang, Xia Li, Bairong Shen, Min Ding, Ziyin Shen
2007 — conf
A Heuristic Approach for Target SNP Mining Based on Genome-Wide IBD Profile.
ICNC (5)
Fan Zhang, Xia Li, Ivan Viktorovich Krivosheev, Binsheng Gong, Lei Du, Chunquan Li
2007 — conf
The Research on the Relationship Between Adrenergic Receptor Subtypes.
ICNC (5)
Hailong Yu, Yan Xu, Yun Xiao, Xia Li
2006 — conf
A Novel Method for Expanding Current Annotations in Gene Ontology.
ICIC (3)
Dapeng Hao, Xia Li, Lei Du, Liangde Xu, Jiankai Xu, Shaoqi Rao
2006 — conf
An Analysis of Gene Expression Relationships Between Periodically Expressed Genes in the Hela Cells.
ICIC (3)
Yun Xiao, Xia Li, Shaoqi Rao, Juan Wang, Yun Zhang, Lei Du
2006 — conf
Analysis of Sib-Pair IBD Profiles Using Ensemble Decision Tree Approach: Application to Alcoholism.
ICIC (3)
Yang Jiang, Qingpu Zhang, Xia Li, Lei Du, Wei Jiang, Ruijie Zhang, Jing Li, Shaoqi Rao
2006 — conf
Association Research on Potassium Channel Subtypes and Functional Sites.
ICIC (3)
Peng Wu, Xia Li, Shaoqi Rao, Wei Jiang, Chuanxing Li, Jie Zhang
2006 J jnl
Discovery of time-delayed gene regulatory networks based on temporal gene expression profiling.
BMC Bioinform.
Xia Li, Shaoqi Rao, Wei Jiang, Chuanxing Li, Yun Xiao, Zheng Guo, Qingpu Zhang, Lihong Wang, Lei Du, Jing Li, Li Li, Tianwen Zhang, Qing K. Wang
2006 J jnl
Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules.
Bioinform.
Dong Wang, Yingli Lv, Zheng Guo, Xia Li, Yanhui Li, Jing Zhu, Da Yang, Jianzhen Xu, Chenguang Wang, Shaoqi Rao, Baofeng Yang
2005 — conf
A New Method for Gene Functional Prediction Based on Homologous Expression Profile.
FSKD (2)
Sali Lv, Qianghu Wang, Guangmei Zhang, Fengxia Wen, Zhenzhen Wang, Xia Li
2005 — conf
A Novel Ensemble Decision Tree Approach for Mining Genes Coding Ion Channels for Cardiopathy Subtype.
FSKD (2)
Jie Zhang, Xia Li, Wei Jiang, Yanqiu Wang, Chuanxing Li, Qiuju Wang, Shaoqi Rao
2005 — conf
A Novel Feature Ensemble Technology to Improve Prediction Performance of Multiple Heterogeneous Phenotypes Based on Microarray Data.
FSKD (2)
Haiyun Wang, Qingpu Zhang, Yadong Wang, Xia Li, Shaoqi Rao, Zuquan Ding
2005 — conf
A Novel Visualization Classifier and Its Applications.
FSKD (2)
Jie Li, Xianglong Tang, Xia Li
2005 — conf
Analysis of Sib-Pair IBD Profiles and Genomic Context for Identification of the Relevant Molecular Signatures for Alcoholism.
FSKD (2)
Chuanxing Li, Lei Du, Xia Li, Binsheng Gong, Jie Zhang, Shaoqi Rao
2005 — conf
Application of a Genetic Algorithm - Support Vector Machine Hybrid for Prediction of Clinical Phenotypes Based on Genome-Wide SNP Profiles of Sib Pairs.
FSKD (2)
Binsheng Gong, Zheng Guo, Jing Li, Guohua Zhu, Sali Lv, Shaoqi Rao, Xia Li
2005 — conf
G Protein Binding Sites Analysis.
FSKD (2)
Fan Zhang, Zhicheng Liu, Xia Li, Shaoqi Rao
2005 — conf
Large-Scale Ensemble Decision Analysis of Sib-Pair IBD Profiles for Identification of the Relevant Molecular Signatures for Alcoholism.
FSKD (2)
Xia Li, Shaoqi Rao, Wei Zhang, Zheng Guo, Wei Jiang, Lei Du
2005 J jnl
Towards precise classification of cancers based on robust gene functional expression profiles.
BMC Bioinform.
Zheng Guo, Tianwen Zhang, Xia Li, Qi Wang, Jianzhen Xu, Hui Yu, Jing Zhu, Haiyun Wang, Chenguang Wang, Eric J. Topol, Qing Wang, Shaoqi Rao
2004 C conf
Classification of Cancer Types Based on Decision Tree Analysis of Gene Function Expression Profiles.
SNPD
Zheng Guo, Tianwen Zhang, Shaoqi Rao, Qi Wang, Hui Yu, Xia Li
2004 C conf
Feature Gene Selection Based on a Hybrid between Genetic Algorithm and Support Vector Machine.
SNPD
Li Li, Wei Jiang, Wu Linna, Shaoqi Rao, Zheng Guo, Xia Li
2004 C conf
Reverse Engineering of Multiple Time-delayed Gene Regulatory Networks.
SNPD
Xia Li, Tianwen Zhang, Wei Jiang, Shaoqi Rao, Li Li, Zheng Guo