Xi Yang

44 papers Misc 6Journal 28Unranked 10
YearRankTypeTitle / Venue / Authors
2024 J jnl
Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports of Lung Cancer Screening Patients Using Transformer Models.
J. Heal. Informatics Res.
Shuang Yang, Xi Yang, Tianchen Lyu, James L. Huang, Aokun Chen, Xing He, Dejana Braithwaite, Hiren J. Mehta, Yonghui Wu, Yi Guo, Jiang Bian
2024 J jnl
Generative large language models are all-purpose text analytics engines: text-to-text learning is all your need.
J. Am. Medical Informatics Assoc.
Cheng Peng, Xi Yang, Aokun Chen, Zehao Yu, Kaleb E. Smith, Anthony B. Costa, Mona G. Flores, Jiang Bian, Yonghui Wu
2024 J jnl
Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias.
J. Biomed. Informatics
Zehao Yu, Cheng Peng, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2024 J jnl
Model tuning or prompt Tuning? a study of large language models for clinical concept and relation extraction.
J. Biomed. Informatics
Cheng Peng, Xi Yang, Kaleb E. Smith, Zehao Yu, Aokun Chen, Jiang Bian, Yonghui Wu
2023 J jnl
A Study of Generative Large Language Model for Medical Research and Healthcare.
CoRR
Cheng Peng, Xi Yang, Aokun Chen, Kaleb E. Smith, Nima M. Pournejatian, Anthony B. Costa, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Gloria P. Lipori, Duane A. Mitchell, Naykky Singh Ospina, Mustafa M. Ahmed, William R. Hogan, Elizabeth Shenkman, Yi Guo, Jiang Bian, Yonghui Wu
2023 J jnl
A study of generative large language model for medical research and healthcare.
npj Digit. Medicine
Cheng Peng, Xi Yang, Aokun Chen, Kaleb E. Smith, Nima M. Pournejatian, Anthony B. Costa, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Gloria P. Lipori, Duane A. Mitchell, Naykky Singh Ospina, Mustafa M. Ahmed, William R. Hogan, Elizabeth A. Shenkman, Yi Guo, Jiang Bian, Yonghui Wu
2023 J jnl
Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer's disease and related dementias.
Int. J. Medical Informatics
Zhaoyi Chen, Hansi Zhang, Xi Yang, Songzi Wu, Xing He, Jie Xu, Jingchuan Guo, Mattia Prosperi, Fei Wang, Hua Xu, Yong Chen, Hui Hu, Steven DeKosky, Matthew Farrer, Yi Guo, Yonghui Wu, Jiang Bian
2023 J jnl
Clinical Concept and Relation Extraction Using Prompt-based Machine Reading Comprehension.
CoRR
Cheng Peng, Xi Yang, Zehao Yu, Jiang Bian, William R. Hogan, Yonghui Wu
2023 J jnl
Clinical concept and relation extraction using prompt-based machine reading comprehension.
J. Am. Medical Informatics Assoc.
Cheng Peng, Xi Yang, Zehao Yu, Jiang Bian, William R. Hogan, Yonghui Wu
2023 J jnl
Contextualized Medication Information Extraction Using Transformer-based Deep Learning Architectures.
CoRR
Aokun Chen, Zehao Yu, Xi Yang, Yi Guo, Jiang Bian, Yonghui Wu
2023 J jnl
Contextualized medication information extraction using Transformer-based deep learning architectures.
J. Biomed. Informatics
Aokun Chen, Zehao Yu, Xi Yang, Yi Guo, Jiang Bian, Yonghui Wu
2023 J jnl
Generative Large Language Models Are All-purpose Text Analytics Engines: Text-to-text Learning Is All Your Need.
CoRR
Cheng Peng, Xi Yang, Aokun Chen, Zehao Yu, Kaleb E. Smith, Anthony B. Costa, Mona G. Flores, Jiang Bian, Yonghui Wu
2023 J jnl
Model Tuning or Prompt Tuning? A Study of Large Language Models for Clinical Concept and Relation Extraction.
CoRR
Cheng Peng, Xi Yang, Kaleb E. Smith, Zehao Yu, Aokun Chen, Jiang Bian, Yonghui Wu
2023 J jnl
On the Impact of Cross-Domain Data on German Language Models.
CoRR
Amin Dada, Aokun Chen, Cheng Peng, Kaleb E. Smith, Ahmad Idrissi-Yaghir, Constantin Marc Seibold, Jianning Li, Lars Heiliger, Xi Yang, Christoph M. Friedrich, Daniel Truhn, Jan Egger, Jiang Bian, Jens Kleesiek, Yonghui Wu
2022 — conf
A Preliminary Study of Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports Using Natural Language Processing.
ICHI
Shuang Yang, Xi Yang, Tianchen Lyu, Xing He, Dejana Braithwaite, Hiren J. Mehta, Yi Guo, Yonghui Wu, Jiang Bian
2022 J jnl
A large language model for electronic health records.
npj Digit. Medicine
Xi Yang, Aokun Chen, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Anthony B. Costa, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu
2022 J jnl
GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records.
CoRR
Xi Yang, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu
2022 — conf
Identify Cancer Patients at Risk for Heart Failure using Electronic Health Record and Genetic Data.
ICHI
Zehao Yu, Xi Yang, Yiqing Chen, Ruogu Fang, William R. Hogan, Yan Gong, Yonghui Wu
2022 J jnl
Identify diabetic retinopathy-related clinical concepts and their attributes using transformer-based natural language processing methods.
BMC Medical Informatics Decis. Mak.
Zehao Yu, Xi Yang, Gianna L. Sweeting, Yinghan Ma, Skylar E. Stolte, Ruogu Fang, Yonghui Wu
2022 J jnl
SODA: A Natural Language Processing Package to Extract Social Determinants of Health for Cancer Studies.
CoRR
Zehao Yu, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021 Misc conf
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models.
AMIA
Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021 J jnl
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models.
CoRR
Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021 J jnl
Clinical Relation Extraction Using Transformer-based Models.
CoRR
Xi Yang, Zehao Yu, Yi Guo, Jiang Bian, Yonghui Wu
2021 Misc conf
Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets.
AMIA
Yunpeng Zhao, Pengfei Yin, Yongqiu Li, Xing He, Jingcheng Du, Cui Tao, Yi Guo, Mattia Prosperi, Pierangelo Veltri, Xi Yang, Yonghui Wu, Jiang Bian
2021 Misc conf
Developing an Ontology for Social and Behavioral Determinants of Health.
AMIA
Hansi Zhang, Xi Yang, Thomas J. George, William R. Hogan, Jiang Bian, Yonghui Wu
2021 J jnl
Extracting social determinants of health from electronic health records using natural language processing: a systematic review.
J. Am. Medical Informatics Assoc.
Braja Gopal Patra, Mohit Manoj Sharma, Veer Vekaria, Prakash Adekkanattu, Olga V. Patterson, Benjamin S. Glicksberg, Lauren A. Lepow, Euijung Ryu, Joanna M. Biernacka, Al'ona Furmanchuk, Thomas J. George, William R. Hogan, Yonghui Wu, Xi Yang, Jiang Bian, Myrna Weissman, Priya Wickramaratne, J. John Mann, Mark Olfson, Thomas R. Campion Jr., Mark G. Weiner, Jyotishman Pathak
2021 — conf
Identify Diabetic Retinopathy-related Clinical Concepts Using Transformer-based Natural Language Processing Methods.
ICHI
Zehao Yu, Xi Yang, Gianna L. Sweeting, Yinghan Ma, Skylar E. Stolte, Ruogu Fang, Yonghui Wu
2021 — conf
Transformer-based named entity recognition for parsing clinical trial eligibility criteria.
BCB
Shubo Tian, Arslan Erdengasileng, Xi Yang, Yi Guo, Yonghui Wu, Jinfeng Zhang, Jiang Bian, Zhe He
2020 — conf
A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives.
ICHI
Xi Yang, Hanyuan Yang, Tianchen Lyu, Shuang Yang, Yi Guo, Jiang Bian, Hua Xu, Yonghui Wu
2020 J jnl
Assessing mental health signals among sexual and gender minorities using Twitter data.
Health Informatics J.
Yunpeng Zhao, Yi Guo, Xing He, Yonghui Wu, Xi Yang, Mattia Prosperi, Yanghua Jin, Jiang Bian
2020 J jnl
Clinical concept extraction using transformers.
J. Am. Medical Informatics Assoc.
Xi Yang, Jiang Bian, William R. Hogan, Yonghui Wu
2020 Misc conf
Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups.
AMIA
Yi Guo, Xing He, Tianchen Lyu, Hansi Zhang, Yonghui Wu, Xi Yang, Zhaoyi Chen, Merry J. Markham, François Modave, Mengjun Xie, William R. Hogan, Christopher A. Harle, Elizabeth Shenkman, Jiang Bian
2020 J jnl
Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting.
J. Am. Medical Informatics Assoc.
Xi Yang, Jiang Bian, Ruogu Fang, Ragnhildur I. Bjarnadottir, William R. Hogan, Yonghui Wu
2019 — conf
A Study of Deep Learning Methods for De-identification of Clinical Notes at Cross Institute Settings.
ICHI
Xi Yang, Tianchen Lyu, Chih-Yin Lee, Jiang Bian, William R. Hogan, Yonghui Wu
2019 J jnl
A study of deep learning methods for de-identification of clinical notes in cross-institute settings.
BMC Medical Informatics Decis. Mak.
Xi Yang, Tianchen Lyu, Qian Li, Chih-Yin Lee, Jiang Bian, William R. Hogan, Yonghui Wu
2019 J jnl
ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design.
BMC Medical Informatics Decis. Mak.
Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia Prosperi, Jinhai Huo, Jordan Alpert, Jiang Bian
2019 Misc conf
Identifying Cancer Patients at Risk for Heart Failure Using Machine Learning Methods.
AMIA
Xi Yang, Yan Gong, Nida Waheed, Keith March, Jiang Bian, William R. Hogan, Yonghui Wu
2019 J jnl
Identifying Cancer Patients at Risk for Heart Failure Using Machine Learning Methods.
CoRR
Xi Yang, Yan Gong, Nida Waheed, Keith March, Jiang Bian, William R. Hogan, Yonghui Wu
2019 — conf
STAT: A Web-based Semantic Text Annotation Tool to Assist Building Mental Health Knowledge Base.
ICHI
Xing He, Hansi Zhang, Xi Yang, Yi Guo, Jiang Bian
2018 — conf
Assessing Mental Health Signals Among Sexual and Gender Minorities using Twitter Data.
ICHI Workshops
Yunpeng Zhao, Yi Guo, Xing He, Jinhai Huo, Yonghui Wu, Xi Yang, Jiang Bian
2018 Misc conf
Combine Factual Medical Knowledge and Distributed Word Representation to Improve Clinical Named Entity Recognition.
AMIA
Yonghui Wu, Xi Yang, Jiang Bian, Yi Guo, Hua Xu, William R. Hogan
2018 — conf
Detecting Medications and Adverse Drug Events in Clinical Notes Using Recurrent Neural Networks.
Medication and Adverse Drug Event Detection
Xi Yang, Jiang Bian, Yonghui Wu
2018 J jnl
OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system.
BMC Medical Informatics Decis. Mak.
Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Xi Yang, Hansi Zhang, Jiang Bian
2018 — conf
Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph.
BIBM
Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia Prosperi, Jiang Bian