Xavier Didelot

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent Model.
PLoS Comput. Biol.
Ian Roberts, Richard G. Everitt, Jere Koskela, Xavier Didelot
2024 J jnl
RecGraph: recombination-aware alignment of sequences to variation graphs.
Bioinform.
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti, Xavier Didelot, Davide Cesare Monti, Yuri Pirola
2023 J jnl
Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease.
Bioinform.
Xavier Didelot, David Helekal, Michelle Kendall, Paolo Ribeca
2022 J jnl
SARS-CoV-2 transmissibility compared between variants of concern and vaccination status.
Briefings Bioinform.
Liang Wang, Xavier Didelot, Yuhai Bi, George F. Gao
2019 J jnl
A dynamic power-law sexual network model of gonorrhoea outbreaks.
PLoS Comput. Biol.
Lilith K. Whittles, Peter J. White, Xavier Didelot
2018 J jnl
A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination.
PLoS Comput. Biol.
Caitlin Collins, Xavier Didelot
2018 J jnl
outbreaker2: a modular platform for outbreak reconstruction.
BMC Bioinform.
Finlay Campbell, Xavier Didelot, Richard G. FitzJohn, Neil M. Ferguson, Anne Cori, Thibaut Jombart
2017 J jnl
Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.
PLoS Comput. Biol.
Don Klinkenberg, Jantien A. Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga
2015 J jnl
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes.
PLoS Comput. Biol.
Xavier Didelot, Daniel J. Wilson
2014 J jnl
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data.
PLoS Comput. Biol.
Thibaut Jombart, Anne Cori, Xavier Didelot, Simon Cauchemez, Christophe Fraser, Neil M. Ferguson
2009 J jnl
SimMLST: simulation of multi-locus sequence typing data under a neutral model.
Bioinform.
Xavier Didelot, Daniel J. Lawson, Daniel Falush