Woong-Hee Shin

16 papers Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
CoBRA: compound binding site prediction using RNA language model.
Briefings Bioinform.
Wonkyeong Jang, Woong-Hee Shin
2024 J jnl
Accurate prediction of protein-ligand interactions by combining physical energy functions and graph-neural networks.
J. Cheminformatics
Yiyu Hong, Junsu Ha, Jaemin Sim, Chae Jo Lim, Kwang-Seok Oh, Ramakrishnan Chandrasekaran, Bomin Kim, Jieun Choi, Junsu Ko, Woong-Hee Shin, Juyong Lee
2021 J jnl
SHREC 2021: Retrieval and classification of protein surfaces equipped with physical and chemical properties.
Comput. Graph.
Andrea Raffo, Ulderico Fugacci, Silvia Biasotti, Walter Rocchia, Yonghuai Liu, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Evangelia I. Zacharaki, Eleftheria Psatha, Dimitrios Laskos, Gerasimos Arvanitis, Konstantinos Moustakas, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin, Daisuke Kihara, Andrea Giachetti, Huu-Nghia Nguyen, Tuan-Duy Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le-Thanh, Hai-Dang Nguyen, Minh-Triet Tran
2021 — conf
SHREC 2021: Surface-based Protein Domains Retrieval.
3DOR
Florent Langenfeld, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin, Genki Terashi, Xiao Wang, Daisuke Kihara, Halim Benhabiles, Karim Hammoudi, Adnane Cabani, Féryal Windal, Mahmoud Melkemi, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Yonghuai Liu, Léa Sirugue, Huu-Nghia H. Nguyen, Tuan-Duy H. Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le, Hai-Dang Nguyen, Minh-Triet Tran, Matthieu Montès
2019 J jnl
Predicting binding poses and affinity ranking in D3R Grand Challenge using PL-PatchSurfer2.0.
J. Comput. Aided Mol. Des.
Woong-Hee Shin, Daisuke Kihara
2019 — ch.
Study of the Variability of the Native Protein Structure.
Encyclopedia of Bioinformatics and Computational Biology (3)
Xusi Han, Woong-Hee Shin, Charles Christoffer, Genki Terashi, Lyman Monroe, Daisuke Kihara
2019 J jnl
Three-dimensional Krawtchouk descriptors for protein local surface shape comparison.
Pattern Recognit.
Atilla Sit, Woong-Hee Shin, Daisuke Kihara
2018 J jnl
Modeling the assembly order of multimeric heteroprotein complexes.
PLoS Comput. Biol.
Lenna X. Peterson, Yoichiro Togawa, Juan Esquivel-Rodríguez, Genki Terashi, Charles Christoffer, Amitava Roy, Woong-Hee Shin, Daisuke Kihara
2017 J jnl
GalaxyDock BP2 score: a hybrid scoring function for accurate protein-ligand docking.
J. Comput. Aided Mol. Des.
Minkyung Baek, Woong-Hee Shin, Hwan Won Chung, Chaok Seok
2016 J jnl
Combined Approach of Patch-Surfer and PL-PatchSurfer for Protein-Ligand Binding Prediction in CSAR 2013 and 2014.
J. Chem. Inf. Model.
Xiaolei Zhu, Woong-Hee Shin, Hyungrae Kim, Daisuke Kihara
2016 J jnl
Evaluation of GalaxyDock Based on the Community Structure-Activity Resource 2013 and 2014 Benchmark Studies.
J. Chem. Inf. Model.
Woong-Hee Shin, Gyu Rie Lee, Chaok Seok
2016 J jnl
PL-PatchSurfer2: Improved Local Surface Matching-Based Virtual Screening Method That Is Tolerant to Target and Ligand Structure Variation.
J. Chem. Inf. Model.
Woong-Hee Shin, Charles Christoffer, Ji-Bo Wang, Daisuke Kihara
2014 J jnl
GalaxySite: ligand-binding-site prediction by using molecular docking.
Nucleic Acids Res.
Lim Heo, Woong-Hee Shin, Myeong Sup Lee, Chaok Seok
2013 J jnl
GalaxyDock2: Protein-ligand docking using beta-complex and global optimization.
J. Comput. Chem.
Woong-Hee Shin, Jae-Kwan Kim, Deok-Soo Kim, Chaok Seok
2012 J jnl
GalaxyDock: Protein-Ligand Docking with Flexible Protein Side-chains.
J. Chem. Inf. Model.
Woong-Hee Shin, Chaok Seok
2011 J jnl
LigDockCSA: Protein-ligand docking using conformational space annealing.
J. Comput. Chem.
Woong-Hee Shin, Lim Heo, Juyong Lee, Junsu Ko, Chaok Seok, Jooyoung Lee