Wolfgang Huber

49 papers A 1B 1C 1Journal 40Unranked 5
YearRankTypeTitle / Venue / Authors
2024 J jnl
Feature selection by replicate reproducibility and non-redundancy.
Bioinform.
Tümay Capraz, Wolfgang Huber
2023 J jnl
MsQuality: an interoperable open-source package for the calculation of standardized quality metrics of mass spectrometry data.
Bioinform.
Thomas Naake, Johannes Rainer, Wolfgang Huber
2023 J jnl
htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets.
Bioinform.
Sudeep Sahadevan, Thileepan Sekaran, Nadia Ashaf, Marko Fritz, Matthias W. Hentze, Wolfgang Huber, Thomas Schwarzl
2022 J jnl
Inferring tumor-specific cancer dependencies through integrating ex vivo drug response assays and drug-protein profiling.
PLoS Comput. Biol.
Alina Batzilla, Junyan Lu, Jarno Kivioja, Kerstin Putzker, Joe Lewis, Thorsten Zenz, Wolfgang Huber
2022 J jnl
MatrixQCvis: shiny-based interactive data quality exploration for omics data.
Bioinform.
Thomas Naake, Wolfgang Huber
2021 J jnl
glmGamPoi: fitting Gamma-Poisson generalized linear models on single cell count data.
Bioinform.
Constantin Ahlmann-Eltze, Wolfgang Huber
2018 J jnl
Authoring Bioconductor workflows with BiocWorkflowTools.
F1000Research
Mike L. Smith, Andrzej K. Oles, Wolfgang Huber
2018 J jnl
Expression Atlas: gene and protein expression across multiple studies and organisms.
Nucleic Acids Res.
Irene Papatheodorou, Nuno A. Fonseca, Maria Keays, Y. Amy Tang, Elisabet Barrera, Wojciech Bazant, Melissa L. Burke, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Nancy George, Laura Huerta, Satu Koskinen, Suhaib Mohammed, Matthew J. Geniza, Justin Preece, Pankaj Jaiswal, Andrew F. Jarnuczak, Wolfgang Huber, Oliver Stegle, Juan Antonio Vizcaíno, Alvis Brazma, Robert Petryszak
2016 J jnl
Expression Atlas update - an integrated database of gene and protein expression in humans, animals and plants.
Nucleic Acids Res.
Robert Petryszak, Maria Keays, Y. Amy Tang, Nuno A. Fonseca, Elisabet Barrera, Tony Burdett, Anja Füllgrabe, Alfonso Muñoz-Pomer Fuentes, Simon Jupp, Satu Koskinen, Oliver Mannion, Laura Huerta, Karine Megy, Catherine Snow, Eleanor Williams, Mitra Barzine, Emma Hastings, Hendrik Weisser, James C. Wright, Pankaj Jaiswal, Wolfgang Huber, Jyoti Choudhary, Helen E. Parkinson, Alvis Brazma
2015 J jnl
FourCSeq: analysis of 4C sequencing data.
Bioinform.
Felix A. Klein, Tibor Pakozdi, Simon Anders, Yad Ghavi-Helm, Eileen E. M. Furlong, Wolfgang Huber
2015 J jnl
HTSeq - a Python framework to work with high-throughput sequencing data.
Bioinform.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber
2015 J jnl
SomaticSignatures: inferring mutational signatures from single-nucleotide variants.
Bioinform.
Julian Gehring, Bernd Fischer, Michael F. Lawrence, Wolfgang Huber
2014 J jnl
Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
Nucleic Acids Res.
Robert Petryszak, Tony Burdett, Benedetto Fiorelli, Nuno A. Fonseca, Mar Gonzalez-Porta, Emma Hastings, Wolfgang Huber, Simon Jupp, Maria Keays, Nataliya Kryvych, Julie A. McMurry, John C. Marioni, James Malone, Karine Megy, Gabriella Rustici, Y. Amy Tang, Jan Taubert, Eleanor Williams, Oliver Mannion, Helen E. Parkinson, Alvis Brazma
2014 J jnl
h5vc: scalable nucleotide tallies with HDF5.
Bioinform.
Paul Theodor Pyl, Julian Gehring, Bernd Fischer, Wolfgang Huber
2013 J jnl
CellH5: a format for data exchange in high-content screening.
Bioinform.
Christoph Sommer, Michael Held, Bernd Fischer, Wolfgang Huber, Daniel Gerlich
2013 J jnl
Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay.
BMC Bioinform.
Grégoire Pau, Thomas Walter, Beate Neumann, Jean-Karim Hériché, Jan Ellenberg, Wolfgang Huber
2013 J jnl
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size.
Bioinform.
Danni Yu, Wolfgang Huber, Olga Vitek
2013 J jnl
Software for Computing and Annotating Genomic Ranges.
PLoS Comput. Biol.
Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey
2011 J jnl
Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples.
BMC Bioinform.
Matthew N. McCall, Peter N. Murakami, Margus Lukk, Wolfgang Huber, Rafael A. Irizarry
2011 J jnl
Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi.
BMC Bioinform.
Elin Axelsson, Thomas Sandmann, Thomas Horn, Michael Boutros, Wolfgang Huber, Bernd Fischer
2011 — ch.
R Language.
International Encyclopedia of Statistical Science
Robert Gentleman, Wolfgang Huber, Vincent J. Carey
2010 J jnl
EBImage - an R package for image processing with applications to cellular phenotypes.
Bioinform.
Grégoire Pau, Florian Fuchs, Oleg Sklyar, Michael Boutros, Wolfgang Huber
2009 J jnl
Array-based genotyping in
Bioinform.
Richard Bourgon, Eugenio Mancera, Alessandro Brozzi, Lars M. Steinmetz, Wolfgang Huber
2009 J jnl
Importing ArrayExpress datasets into R/Bioconductor.
Bioinform.
Audrey Kauffmann, Tim F. Rayner, Helen E. Parkinson, Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber
2009 J jnl
The hwriter package: Composing HTML documents with R objects.
R J.
Grégoire Pau, Wolfgang Huber
2009 J jnl
arrayQualityMetrics - a bioconductor package for quality assessment of microarray data.
Bioinform.
Audrey Kauffmann, Robert Gentleman, Wolfgang Huber
2008 J jnl
Analyzing ChIP-chip Data Using Bioconductor.
PLoS Comput. Biol.
Joern Toedling, Wolfgang Huber
2008 J jnl
Estimating node degree in bait-prey graphs.
Bioinform.
Denise Scholtens, Tony Chiang, Wolfgang Huber, Robert Gentleman
2008 J jnl
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository.
Bioinform.
Tony Chiang, Nianhua Li, Sandra E. Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber
2007 J jnl
CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data.
Bioinform.
Charles Girardot, Oleg Sklyar, Sophie Grosz, Wolfgang Huber, Eileen E. M. Furlong
2007 J jnl
Graphs in molecular biology.
BMC Bioinform.
Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman
2007 J jnl
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation.
BMC Bioinform.
Tineke Casneuf, Yves Van de Peer, Wolfgang Huber
2007 J jnl
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts.
BMC Bioinform.
Joern Toedling, Oleg Sklyar, Wolfgang Huber
2007 J jnl
Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts.
BMC Bioinform.
Joern Toedling, Oleg Sklyar, Tammo Krueger, Jenny J. Fischer, Silke Sperling, Wolfgang Huber
2006 J jnl
The LIFEdb database in 2006.
Nucleic Acids Res.
Alexander Mehrle, Heiko Rosenfelder, Ingo Schupp, Coral del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, Jeremy C. Simpson, Oliver Hofmann, Winston Hide, Karl-Heinz Glatting, Wolfgang Huber, Rainer Pepperkok, Annemarie Poustka, Stefan Wiemann
2006 J jnl
Transcript mapping with high-density oligonucleotide tiling arrays.
Bioinform.
Wolfgang Huber, Joern Toedling, Lars M. Steinmetz
2005 J jnl
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.
Bioinform.
Steffen Durinck, Yves Moreau, Arek Kasprzyk, Sean R. Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber
2005 J jnl
arrayMagic: two-colour cDNA microarray quality control, preprocessing.
Bioinform.
Andreas Buness, Wolfgang Huber, Klaus Steiner, Holger Sültmann, Annemarie Poustka
2004 — conf
Interference minimizing bandwidth guaranteed on-line routing algorithm for traffic engineering.
ICON
Karl Hendling, Thomas Losert, Wolfgang Huber, Martin Jandl
2004 — conf
Reproducible Statistical Analysis in Microarray Profiling Studies.
PARA
Ulrich Mansmann, Markus Ruschhaupt, Wolfgang Huber
2004 — conf
Towards a Rapid Prototyping Framework for Architecture Exploration in Embedded Systems.
WISES
Martin Jankela, Wolfgang Puffitsch, Wolfgang Huber
2004 J jnl
matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements.
Bioinform.
Wolfgang Huber, Robert Gentleman
2003 B conf
Processor Support for Temporal Predictability - The SPEAR Design Example.
ECRTS
Martin Delvai, Wolfgang Huber, Peter P. Puschner, Andreas Steininger
2002 — conf
Variance Stabilization and Robust Normalization for Microarray Gene Expression Data.
COMPSTAT
Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron
2002 A conf
Variance stabilization applied to microarray data calibration and to the quantification of differential expression.
ISMB
Wolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron
2001 J jnl
FLASHFLOOD: A 3D Field-based similarity search and alignment method for flexible molecules.
J. Comput. Aided Mol. Des.
Michael Pitman, Wolfgang Huber, Hans W. Horn, Andreas Krämer, Julia E. Rice, William C. Swope
2001 — conf
Identifying splits with clear separation: a new class discovery method for gene expression data.
ISMB (Supplement of Bioinformatics)
Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron
1995 J jnl
The three-loop model: a neural network for the generation of saccadic reaction times.
Biol. Cybern.
Burkhart Fischer, Stefan Gezeck, Wolfgang Huber
1991 C conf
Die EG-Politik im Bereich des Informationsmarktes.
ISI
Wolfgang Huber